Phocoena sinus (vaquita): 116740772
Help
Entry
116740772 CDS
T07759
Symbol
CACNA1H
Name
(RefSeq) voltage-dependent T-type calcium channel subunit alpha-1H isoform X1
KO
K04855
voltage-dependent calcium channel T type alpha-1H
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu04010
MAPK signaling pathway
psiu04020
Calcium signaling pathway
psiu04713
Circadian entrainment
psiu04925
Aldosterone synthesis and secretion
psiu04927
Cortisol synthesis and secretion
psiu04929
GnRH secretion
psiu04934
Cushing syndrome
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
116740772 (CACNA1H)
04020 Calcium signaling pathway
116740772 (CACNA1H)
09150 Organismal Systems
09152 Endocrine system
04929 GnRH secretion
116740772 (CACNA1H)
04925 Aldosterone synthesis and secretion
116740772 (CACNA1H)
04927 Cortisol synthesis and secretion
116740772 (CACNA1H)
09159 Environmental adaptation
04713 Circadian entrainment
116740772 (CACNA1H)
09160 Human Diseases
09167 Endocrine and metabolic disease
04934 Cushing syndrome
116740772 (CACNA1H)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
psiu04040
]
116740772 (CACNA1H)
Ion channels [BR:
psiu04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
116740772 (CACNA1H)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
PKD_channel
DUF4834
TMEM208_SND2
Motif
Other DBs
NCBI-GeneID:
116740772
NCBI-ProteinID:
XP_032462571
Ensembl:
ENSPSNG00000005454
LinkDB
All DBs
Position
15:50535223..50561558
Genome browser
AA seq
2225 aa
AA seq
DB search
MLVIMLNCVTLGMFRPCEDVECRSERCSILEAFDDFIFAFFAVEMVIKMIALGLFGQKCY
LGDTWNRLDFFIVMAGMMEYSLDGHNVSLSAIRTVRVLRPLRAINRVPSMRILVTLLLDT
LPMLGNVLLLCFFVFFIFGIVGVQLWAGLLRNRCFLDSTFARNSNLSFLRPYYQPEEGEE
NPFICSSRRDNGMQKCSHIPSRRELRVECTLGWEAYGQPQAEGVGGTDHHTCINWNQYYN
VCRSGDSNPHNGAISFDNIGYAWIAIFQVITLEGWVDIMYYVMDAHSFYNFIYFILLIIV
GSFFMINLCLVVIATQFSETKQRESQLMREQRARYLSNDSTLASFSEPGSCYEELLRYVG
HVCRKLKRRGLRLYARWQSRWRKKVDPSGVPHGQGAGWRPRRAGGRATSIHHLVYHHHHH
HHHHYHFSHGSPRRPGPEPGGGDTRLVRAGAPPSPGHGPPDAESVHSVYHADCHVEGPQE
RARAAHAVATAAASLKLATGLGTMNYPTILPSAAGSGKGGPGPKGKRPGGPLGAGGHSPL
SLSSPDPCEKIQHLVGEHGLGQAPSRLSGLSVPCPLPSPQAGTLTCELSSCPYCTSALED
PELEFSDSDSGDSDSNGVYEFTRDVRHGDRRDPMQPPPAADTPGSGGTRRRAQRRAVAGE
QGGLGRIWASFSGKLCRIVDSKYFNRGIMVAILTNTLSMGIEYHEQPDELTNALEISNIV
FTSMFALEMLLKLLAFGPLGYIRNPYNIFDGIIVVISVWEIVGQADGGLSVLRTFRLLRV
LKLVRFLPALRRQLVVLMKTMDNVATFCMLLMLFIFIFSILGMHLFGCKFSLKTDTGDTV
PDRKNFDSLLWAIVTVFQILTQEDWNVVLYNGMASTSSWAALYFVALMTFGNYVLFNLLV
AILVEGFQAEGDATRSDTDEDKTSTHLEEDLDKFRDLRATEMKMYSLAVTPNGHLEGQAS
LPPPLIMRTAATPMPTPKSSPHLDAAPGLLDSRRGSSSSVDPQLGDQKSLSSLRSSPCTH
WGPNSAWSSRRSSWNSLGRAPSLKRRSQCGERESLLSGEGKGSGSTDEEAEDSRPGVGAS
PDTRATLLRRTESLDHRSTLDLRPLRPAALLPTKLHDCNGLALPSELFLCIDSHKEDTAE
FDDDVEDSCYSRLQKVLEPYKPECCRSREPWALYLFSPQNRFRISCQKIIAHKMFDHVVL
VFIFLNCITIALERPDIDPGSTERVFLSISNYVFTAIFVAEMMVKVVALGLVSGEHAYLQ
SSWNILDGLLVLVSLVDIIVAMASAGGAKILGILRVLRLLRTLRPLRVISRAPGLKLVVE
TLISSLRPIGNIVLICCAFFIIFGILGVQLFKGKFYYCEGADTRNISTKAECWAAHYRWV
RRKYNFDNLGQALMSLFVLSSKDGWVNIMYDGLDAVGIDQQPVPNHNPWMLLYFISFLLI
VSFFVLNMFVGVVVENFHKCRQHQEAEEARRREEKRQRRLERKRRKAQRRPYYADYSPTR
RSIHSLCTSHYLDLFITFIIGVNVITMSMEHYNQPKSLDEALKYCNYVFTIVFVFEALLK
LVAFGFRRFFKDRWNQLDLAIVLLSIMGITLEEIEMNAALPINPTIIRIMRVLRIARVLK
LLKMATGMRALLDTVVQALPQVGNLGLLFMLLFFIYAALGVELFGRLECGEDNPCEGLSR
HATFSNFGMAFLTLFRVSTGDNWNGIMKDTLRECAREDRHCLSYLPAISPIYFVTFVLVA
QFVLVNVVVAVLMKHLEESNKEAREDAELDAEVELEMAQGPSARPRPVAPPSPGASPDAP
NLLVVRKVSVSRMLSLPNDSYMFRPVAPAAAAHPHPLQEVEMETYAGASGTSGPVTAHLP
PVESCPSLQVPSAMSSPARGGDTHRALTPLGAARSPSLSRLLCTQEVVCTESLEGQVDSP
RDSSPGWGEPGGKTPVRQAPPRPPSIRIRKHTLGQNYVSSRPPALGAEEAEAPDPDDEEV
SHITSSAHSPSASPAARGVVGGEPDLHRLYSVNAQGFLDQPGWADEQRRPSVEQGCGDSR
PEAEEVKTRALEAELALGARRKKKMSPPCISIEPPTEDEGAARAPAAEGGSTTLRRRTPS
CEAVPHRDPLEPTDSAGLDTAAKGERRVQVPCRTEHLTIPNFAFEPLDVGGPRGDLFLDG
SHGVAPEPRPSSSGITAPPEPQQTEPPVASGDTPEEGWGLHLTVPESPPKKGSTPVLGDS
VDKPV
NT seq
6678 nt
NT seq
+upstream
nt +downstream
nt
atgctggtcatcatgctcaactgcgtgaccctgggcatgttccgcccctgcgaggacgtc
gagtgccgctcggagcgctgcagcatcctggaggcgtttgacgacttcatctttgccttc
ttcgcggtggagatggtcatcaagatgatcgcccttgggctgttcgggcagaagtgctac
ctgggcgacacgtggaacaggctggacttcttcatcgtcatggcgggcatgatggagtac
tctctggatggacacaacgtgagcctctcggccatccggacagtgcgtgtgctgcggccc
ctccgtgccatcaaccgtgtgcccagcatgaggatcctggtcacgctgctgctggacacg
ctgcccatgctcgggaacgtcctcctgctctgcttctttgtcttcttcatcttcggcatc
gtgggtgtccagctttgggctggcctgctgcgcaaccgctgcttcctggacagcaccttc
gccaggaacagcaacctcagcttcctgcggccatactaccagccggaggagggtgaggaa
aaccccttcatctgctcctctcgccgggacaacggcatgcagaagtgctcacacatcccc
agccgccgcgagctgcgcgtggagtgcacgctgggctgggaggcctatgggcagccacag
gccgagggtgtaggtggcacggaccaccacacctgcatcaactggaaccagtactacaat
gtgtgccgctcgggcgactccaacccacacaacggggccatcagcttcgacaacatcggc
tatgcctggatcgccatcttccaggtgatcacgctggagggctgggtggacatcatgtac
tacgtcatggatgcccattccttctacaacttcatctacttcatcctgctcatcattgtg
ggttccttcttcatgatcaacctgtgcctagtggtgatcgccacgcagttctcggagacg
aagcaacgggagagccagctgatgcgggagcagcgggcccgctacctgtccaacgacagc
acgctggccagcttctcagagcctggcagctgctatgaggagctcctccggtacgtgggc
catgtgtgccgcaagctgaagcgccgtggcctccgcctctatgcccgctggcagagccgc
tggcgcaagaaggtggaccccagcggcgtgccgcacggccagggcgctgggtggcggcca
cggcgggcgggagggcgcgccacctccatccaccatcttgtgtaccaccaccaccaccac
caccaccaccactaccacttcagccatggcagcccacgccggccaggccccgagccaggc
ggcggtgacaccaggctggtgcgggccggagcacctccctcgcccggacatgggccccct
gacgctgagtcagtgcacagcgtgtaccatgcagactgccacgtggaggggccacaggag
agggcccgggcggcacatgctgtggccactgccgccgccagcctcaagctggccactggg
ctgggcaccatgaactaccccaccatcctgccctcggccgcaggcagtggcaaaggtggc
cccgggcccaaggggaagcgtcctggtggacccctgggagccggggggcacagcccactg
agcctgagcagccccgacccctgcgagaagatccagcatctggttggggagcacggactg
ggccaggcccccagccgtctgtcaggcctgagcgtgccctgccccctgcccagcccccag
gcgggcacgctgacctgtgagctgagtagctgcccgtactgcaccagcgccctggaggac
cccgagctggagttcagcgactcagacagcggagactcggacagcaacggggtctacgaa
ttcacacgggatgtgcggcatggagaccgccgtgaccccatgcagccacccccagcggcg
gacacgccaggctcaggaggaacgcggcggagggcacagcggcgggcggtggcaggcgag
cagggagggctgggccgcatctgggcctcctttagcggcaagctgtgccgcatcgtggac
agcaaatacttcaaccgcggcatcatggtagccatcctcaccaacacgctgagcatgggc
atcgagtaccatgagcagcctgacgagctgaccaacgccctggagatcagcaacatcgtg
ttcacgagtatgtttgccctggagatgctgctgaagctgctggcctttggtccgctgggc
tacatccggaatccctacaacatcttcgatggcatcatcgtggtcatcagcgtgtgggag
atcgtcgggcaggcggacggcgggctgtcggtgctgcgcaccttccggttgctgcgcgtg
ctcaagctggtgcgcttcctgcccgcgctgcggcgccagctggtggtgctcatgaagacc
atggataacgtggccactttctgcatgctgctcatgctgttcatcttcatcttcagcatc
ctcggaatgcacctgtttggctgcaaattcagcctgaaaacagacactggagacacggtc
cctgacaggaagaactttgactccctgctgtgggccatcgtcaccgtgttccagatcctc
acccaggaggactggaacgttgtcctctacaacggcatggcctccacctcttcctgggct
gccctctacttcgtggccctcatgacctttggcaactacgtgctcttcaacctgctggtg
gccatccttgtggagggcttccaggcggagggtgatgccaccaggtccgacacagatgaa
gacaagacctccacccacttggaggaggacttggacaagttcagagacctcagggccaca
gagatgaagatgtactcgctggcggtgacccccaacgggcacttggagggccaggccagc
ctaccccctcccctcatcatgcgcacagcagccacacccatgcccacccccaagagctcc
ccacacctggatgcggcccctggcctcctggactcacggcgtgggagcagcagctccgtg
gacccccaactgggggaccagaagtctctgtccagcctccgcagctcgccctgcacccac
tggggccccaacagcgcctggagcagccggcgctccagctggaacagcctgggccgcgca
cctagcctcaagcgcaggagccagtgcggggagcgtgagtcgctgctatccggtgagggc
aagggcagcggcagcacagacgaggaggccgaggacagcaggcctggtgtgggagcctct
ccagacacacgtgccacactgctgcggcgcaccgagtccctggaccaccgcagcacgctt
gacctgcggcccctgcggccggctgccctgctgcccaccaagctccacgactgcaacggg
ctggccctgcccagcgagttattcctgtgcatcgacagccacaaggaggacacggccgag
tttgacgatgatgtggaggatagctgctactcccggctgcagaaagtgctggagccctac
aagcccgagtgctgtcggagccgcgagccctgggccctgtacctcttctccccacagaac
aggttccgcatctcctgccagaagatcattgctcacaagatgtttgatcacgtcgtcctg
gtcttcatcttcctcaactgcatcacgatcgccctggagaggcccgacattgaccccggc
agcaccgagcgcgtcttcctcagcatctccaactacgtcttcacggcgatcttcgtggcc
gagatgatggtgaaggtggtggccctgggcctggtctctggtgagcatgcctacctgcag
agcagctggaacatactggatgggctgctggtcctggtgtccctggttgacatcatcgtg
gccatggcgtcggccggtggtgccaagatcctgggcatcctgcgtgtgctgcgcctgctg
cggacactgcggcccctgcgggttatcagccgtgccccaggcctcaaactggtggtggag
actctgatatcgtcactcaggcccatcggaaacattgtcctcatctgctgtgccttcttc
atcatcttcggcatcctaggggtgcagctcttcaaggggaagttttactactgcgagggc
gctgacaccaggaacatctccactaaagccgagtgctgggctgcacactaccgctgggtg
cgacgcaagtacaacttcgacaacctgggccaggcgctgatgtccctgttcgtgctctca
tccaaggacggctgggtgaacatcatgtacgacgggctggacgccgtgggcatagaccag
cagccggtgcccaaccacaacccctggatgctgctctacttcatctccttcctgctcatc
gtcagcttctttgtgctcaacatgttcgtgggcgtcgtggtggagaacttccacaagtgc
cggcagcaccaggaggccgaggaggcgcggcggcgggaagagaagcggcagcggcgcctg
gagaggaaacgcaggaaggcccagcgccggccctactatgcggactactcacccacgcgt
cgctccatccactctctgtgcaccagccactatctggacctcttcatcaccttcatcatc
ggcgtcaacgtcatcaccatgtccatggagcactataaccagcccaagtctctggacgag
gccctcaagtactgcaattatgtgttcaccatcgtcttcgtctttgaggccctgctgaag
ctggtggcgtttgggttccggaggtttttcaaggacaggtggaaccagctggacctggcc
atcgtcctgctgtccatcatgggcatcacactggaggagatagagatgaacgcggcgctg
cccatcaaccccaccatcatccgcatcatgcgtgtgctccgcatcgcccgcgtgctgaag
ctgctcaagatggccacgggtatgcgggccctgctggacaccgtggttcaggcgctgccc
caggtagggaacctcggcctgcttttcatgctcctgttttttatctatgctgccctggga
gtggagctgtttgggaggctcgagtgcggtgaggacaacccctgcgagggcctgagcaga
cacgccaccttctccaactttggcatggctttcctcacactgttccgcgtgtccacgggg
gacaactggaacgggatcatgaaggacacgctgcgggagtgtgcccgtgaggacaggcac
tgcctcagctacctgccggccatctcgcccatctacttcgtcaccttcgtgctggtggcc
cagttcgtgctggtcaacgtggtggtggccgtgctcatgaagcacctggaggagagcaac
aaggaggcccgcgaggatgccgagctggacgcggaggtcgagctggagatggcgcagggg
ccctccgcccgccccaggcccgtggccccgccgagcccgggtgcctcgccggacgccccc
aacctgctggtcgtgcgcaaggtgtctgtgtccaggatgctctcactgcccaacgacagc
tacatgttccggcccgtggcacccgctgcagccgctcatccccacccgctgcaggaggtg
gagatggagacctacgcgggcgcctcgggcacctcgggcccagtcaccgcccacttgccg
cctgtggagtcctgcccatccctccaggtcccgtcggctatgtcctccccggccaggggc
ggcgacacccaccgtgccctgacccctctgggtgcagcccgctcccctagtctcagccgg
ctgctctgcacacaggaggtagtctgcacagagtccctagaagggcaggtcgatagtccc
agggacagcagcccgggctggggagagcctggtgggaagacccctgtgaggcaggcgccc
ccgcggccccccagcatccgcatccgcaagcacactttgggacagaactacgtctccagc
cggccaccggccctgggtgcagaggaggccgaggccccagacccagatgatgaggaggtc
agccacatcaccagctctgcccacagcccctcggcctcacctgctgcccgtggggtggtg
ggcggtgagccagacctgcacaggctctacagtgtcaatgcccagggcttcctggaccag
ccaggctgggcggacgagcaaaggcggccctccgtggagcagggctgtggggacagccgc
ccagaggccgaggaggtgaagacccgggccctggaggccgagctggccctgggggcacgc
aggaagaagaagatgagccccccctgcatctccatagagccccccacggaggacgagggt
gcggcccgggcccctgcagcggagggcggtagcaccaccctgcggcggagaaccccatcc
tgcgaggctgtgccccacagggaccccctggagcccacagacagtgcagggttggacact
gctgccaagggggaacggcgggtccaggtcccctgccgcacggaacacctgaccatcccg
aactttgcctttgagccgctggatgtggggggccccaggggggacctgttcttggatggt
agccatggtgtcgccccagagcccagaccttcctcctcaggcatcacggcacctcccgaa
ccccagcagacggagcctccagtggcctcgggagacaccccagaggaggggtgggggctg
cacctcacagtccctgagagcccaccgaagaaagggtccaccccagtcctgggtgacagt
gtggacaagcccgtgtag
DBGET
integrated database retrieval system
