Phocoena sinus (vaquita): 116740779
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Entry
116740779 CDS
T07759
Symbol
TAF4
Name
(RefSeq) LOW QUALITY PROTEIN: transcription initiation factor TFIID subunit 4
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu03022
Basal transcription factors
psiu05016
Huntington disease
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
116740779 (TAF4)
09160 Human Diseases
09164 Neurodegenerative disease
05016 Huntington disease
116740779 (TAF4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psiu03021
]
116740779 (TAF4)
03036 Chromosome and associated proteins [BR:
psiu03036
]
116740779 (TAF4)
Transcription machinery [BR:
psiu03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
116740779 (TAF4)
Coactivators
SAGA/TFTC/STAGA complex
116740779 (TAF4)
Chromosome and associated proteins [BR:
psiu03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
116740779 (TAF4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
tRNA-synt_1c
Motif
Other DBs
NCBI-GeneID:
116740779
NCBI-ProteinID:
XP_032462588
Ensembl:
ENSPSNG00000013933
LinkDB
All DBs
Position
15:1661226..1733347
Genome browser
AA seq
1047 aa
AA seq
DB search
MAAGSDLLDEVFFNSEVDEKVVSDLVGSLESQLAASAAHHHHLAPRAPEARAAAAGALGN
HVGAGAVPAEGAPAAAPEPPPAGRARRGLSAGGRRPGPRPHCAASLVPAGPAAKLSALEA
GASAAAGAGAGAGAAAGACAPGAAAAPEPAAKPAARNGPPGGPGAAQTLNGSASLGNSLR
AAAAPAVSLLHNGPAPAPPPPKPAAATVIQTPPFLGAPPAPAPASPSPPAPAAPPAPPAP
AAAAPPPAPPAAASLARPPGPPAGPPVAAQNGGSAAPAPAPAPAPAPAPAPVSAPAPAAN
SQPGPAAAPAQVAKADSPKTALQPAPPPPQTLAASCPAGAGAGMILGPTMQGALPAAAGL
PPPAPGTPTGLPKGSTSAVTQSLPRTPSATTGGIRATLTPTVLAPRLPQPPQNPTNIQNF
QLPPGMVLVRSENGQLLMIPQQALAQMQAQAHAQAQPQTAMAPRPATPTSAPPVQISTVQ
APGTPIIARQVTPTTIIKQVSQAQTTVQPSTALQRSPGVQPQLVLGGAAQTPSLGTATAV
QTGTPQRTVPGATTTSTAATETMENVKKCKNFLSTLIKLASSGKQSTETAANVKELVQNL
LDGKIEAEDFTSRLYRELNSSPQPYLVPFLKRSLPALRQLTPDSAAFIQQSQQQPPPASQ
ATTALTAVVLSGSVQRTAGKTAATVTSALQPPVISLAQPTPVGVGKQGQPTPLVIRPPQV
TLTQTPMVALRQPHSRIVLTTPQQVQLSQLQPVPVVKPAVLPGAKALSAVSAQAAAAQKN
KLKEPGGGSFRDDDDINDVASMAGVNLSEESARILATNSELVGTLTRSCKDETFLLPAPL
QRRILEIGKKHGITELHPDVVSYVSHATQQRLQNLVEKISETAQQKNFSYKDDDRYEQAS
DVRAQLKFFEQLDQIEKQRKDEQEREILMRAAKSRSRQEDPEQLRLKQKAKEMQQQELAQ
MRQRDANLTALAAIGPRKKRKVDSPAPGSGVEGSGPGSAVPGSSGVGTPRQFTRQRITRV
NLRDLIFCLENERETSHSLLLYKAFLK
NT seq
3144 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgggctcggatctgctggacgaggtcttcttcaacagcgaggtggacgagaaa
gtggtgagcgacctggtgggctcgctcgagtcgcagctggcggccagcgcggcccaccac
caccacctcgcgccccgcgcgcccgaggcgcgggccgcggccgccggcgcgctcgggaac
catgtcggagccggagccgtgccggccgagggcgcgcccgcagcggcgccggagccgccc
cccgcaggtagagcgcggcgcggcctgagcgcgggcggccgccggccgggcccgcgtcct
cactgcgctgcttcgcttgtccccgcagggcccgccgcgaagctgagcgcgctcgaggcc
ggcgcgagcgccgcggccggcgccggggccggggccggcgccgcggccggggcctgtgcg
ccgggggcagcggccgcgcccgagcccgccgccaagcccgccgcccgcaacggcccgccc
ggcggccccggcgccgcgcaaactttgaatgggagcgcctcgttggggaactcgctccgc
gccgccgccgcacctgctgtcagcctgctccacaacgggcccgcgcccgcgccgccgccg
cccaagcccgccgccgccactgtcatccagacgccgcccttcctcggcgccccccccgcg
cccgcgcccgcgtccccctcgccccccgcgcccgccgcgccccccgcgccccccgcgccc
gccgccgccgccccgccgccggcgccgcccgccgccgccagcctggcccggccgcccggc
cccccggccggacccccggtggccgcgcagaacgggggcagcgccgcgcccgcccccgcg
cccgcccccgcgcccgccccggccccagcgcccgtttctgccccggcgcccgccgccaac
agtcagccagggcccgccgccgcgcccgcgcaggtggccaaggccgactcgcccaagact
gcgctgcagccggcgcccccgccgccgcagaccctggcggccagctgcccggccggcgcg
ggggccggcatgatcctcgggccaactatgcaaggggctctgcccgccgccgccggcctc
ccaccgccggcccccggtacccccaccgggctgcccaagggctcgaccagcgcggtgacc
cagagcctgcccaggacgccctcggccaccaccggcgggatccgggccacgctgacgccc
acggtcctcgccccacgcctgccgcagccgccgcagaacccgaccaacatccagaacttc
cagctgcccccaggtatggtcctcgtgcggagcgagaacgggcagctgttaatgattcct
cagcaggccctggcccagatgcaggcccaggcccacgcccaggcccagcctcagaccgcc
atggcgccccgcccggccacgcccacaagtgcccctcccgtgcagatctccaccgtgcag
gcacctgggacccccattattgcacggcaggtgaccccaacgaccataatcaagcaagtg
tctcaggcccagacgacggtacagcccagcactgcgctgcagcgctctcccggggttcag
cctcagcttgttctgggtggcgctgcccagacaccctcacttgggacggcgacagctgtt
cagacggggacacctcagcgaacggtcccgggggccaccaccacctccacagccgccacg
gaaactatggagaacgtgaagaaatgtaaaaattttttatctacgctaataaaactggct
tcatctggtaaacagtctacagagacagccgctaacgtgaaagaactggtacagaatctg
ctggacggaaaaatcgaagcagaagatttcactagtaggttataccgagaacttaattct
tcacctcaaccttaccttgtgcctttcctgaagaggagcttgcccgccttgagacagctg
acccccgactccgcggccttcatccagcagagtcagcagcagccgccaccggcctcgcag
gccaccaccgcgctcacggctgtggtgctcagcggctcggtgcagcgcacagccgggaag
acggcggccaccgtgaccagtgccctccagccccctgtcatcagcctcgcgcagcccacg
ccggtgggcgtcggcaagcaggggcagcccacgccgctggtgatccggccgccgcaggtg
acgctgacacagacgcccatggtggcgctccggcagccccacagccgcatcgtgctcacc
acgccccagcaggtccagctgagccagctgcagccagtccctgtggtgaaacctgccgtg
ttacctggagccaaagctctttctgccgtctcggcacaggcagccgctgcacagaagaac
aagctcaaggagcccggggggggctcgtttagggacgacgatgacatcaatgacgtagcg
tcgatggccggcgtgaacctgtcggaagaaagtgcgagaatattggctacgaactctgag
ttagtgggcaccctgacgcggtcctgcaaagacgagaccttcctcctcccggcgcctctg
caaagaagaatattggaaataggtaagaaacacggcataacagagctacacccagacgtg
gtgagttacgtgtcacacgccacgcaacagaggctgcagaaccttgtagaaaagatatca
gaaacggctcagcaaaagaacttctcttataaggatgatgacagatacgagcaggcaagt
gatgtccgggctcagctgaaattttttgaacagcttgatcaaattgagaaacagagaaag
gacgagcaggagagagagatcttgatgcgggcggcaaagtctcggtccagacaagaagat
ccagagcagttaaggttgaaacagaaggcaaaggagatgcagcaacaagaactggcacag
atgaggcagcgagatgccaacctcacagcactagctgccatcgggcccaggaaaaagagg
aaagtggactctccggcaccgggatcgggagtagagggctcgggcccaggctcagcggtc
ccaggcagttccggcgtcggaacccccagacagttcacgcgacaaaggatcacgcgggtc
aacctcagggacctcatattttgtttagaaaatgaacgtgagacaagccattcactgttg
ctctacaaagcattccttaagtag
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integrated database retrieval system
