Phocoena sinus (vaquita): 116740810
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Entry
116740810 CDS
T07759
Symbol
SAMHD1
Name
(RefSeq) deoxynucleoside triphosphate triphosphohydrolase SAMHD1 isoform X1
KO
K22544
deoxynucleoside triphosphate triphosphohydrolase SAMHD1 [EC:3.1.5.-]
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu03250
Viral life cycle - HIV-1
psiu04623
Cytosolic DNA-sensing pathway
psiu05170
Human immunodeficiency virus 1 infection
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
116740810 (SAMHD1)
09150 Organismal Systems
09151 Immune system
04623 Cytosolic DNA-sensing pathway
116740810 (SAMHD1)
09160 Human Diseases
09172 Infectious disease: viral
05170 Human immunodeficiency virus 1 infection
116740810 (SAMHD1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psiu03400
]
116740810 (SAMHD1)
DNA repair and recombination proteins [BR:
psiu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
116740810 (SAMHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SAM_2
HD
SAM_1
PDEase_I
HD_assoc_2
Motif
Other DBs
NCBI-GeneID:
116740810
NCBI-ProteinID:
XP_032462654
Ensembl:
ENSPSNG00000006927
UniProt:
A0A8C9BWS8
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Position
15:22546338..22623127
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AA seq
628 aa
AA seq
DB search
MQSADSQKPPKRSRRDGSPRTPPNTPPADTERSPSPDLHPDHRTWGPEQVCSFLRDCGFS
DSGLLERCREKKITGSILPFLDESLLEDLGISSYGKRIKLLNNIQQLDQTHVYTMKVIND
PIHGHIEFHPLLIRIIDTPQFQRLRYIKQLGGGYYVFPGASHNRFEHSLGVGYLAGCLVR
ELSEKQPELQISERDMLCVQIAGLCHDLGHGPFSHMFDGRFIPLARPDVKWTHEQGSVMM
FEHLVNSNGLRDVMEQYGLIPEEDIWFIKEQITGPPESPIKDSSKWLYKGRPKEKSFLYE
IVANKRNGIDVDKWDYFARDCHHLGIQNNFDYKRFIKFARVCEVDDRKHICTREKEVGNL
YDMFHTRNSLHRRAYQHKVGNIIDTMITDAFLEADPYIEITGTEGKKYHISTAIDDMEAF
TKLTDNIFLEILYSADPKLDAARAILKKIECRNLYKFVGETQPIGQIRIKKENYESLPKG
VASAKPSDMVLEPELKAEDFVVDVINMDYGMEDKNPIDHVRFYCKSEPSQAIMITKNQVS
QFLPEVFAEQLIRVYCKKTDKRSLYAAQQHFVHWCLINNFTKPQDGDIVAPLITPRKLEW
NYTHSAQSPAHTREASKFKAQLFPDDSV
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
atgcagagtgccgactcgcagaagccccccaagcggtcccggcgcgatggtagcccgaga
accccgccaaacacccctcccgcagacacagagaggtcaccgagccccgaccttcacccc
gaccaccggacctggggcccggagcaggtgtgctccttcctaagagactgtggcttcagc
gattctggactgctggaacgctgccgagagaagaaaatcacaggttcaatactgcccttt
cttgatgagtctcttcttgaagaccttggaataagttcctatgggaagagaataaagctg
cttaataatatccaacaactggatcaaactcatgtttatacaatgaaggtgattaatgat
cctatccatggtcacattgaatttcaccctcttctcatccgaatcatcgacacacctcaa
tttcagcgcctgcgatatattaagcagttgggaggcggttactatgtttttccaggagct
tcacacaatcgatttgagcatagtctaggcgtagggtatctagcaggatgtctagttcgt
gaactgagtgaaaaacaaccagagctgcagataagtgaacgagatatgctctgtgttcag
atcgctggtctttgtcatgatctcggtcatgggccattttctcatatgttcgatggaaga
tttattccacttgctcgcccagatgtgaaatggacgcatgaacagggctcggttatgatg
tttgagcacctagttaattctaacggactcagagatgtcatggaacagtatggtctcatc
cctgaagaagatatttggtttatcaaggaacaaattacaggaccacctgaatcacccatc
aaagattcttcaaagtggttatataaagggcgtcctaaagaaaaaagcttcctttatgag
atagtggccaataaaagaaatggcattgatgtggacaaatgggattattttgccagggac
tgccatcatcttggaatccaaaataattttgattacaagcgctttattaagtttgcccgt
gtctgtgaggtagatgataggaagcacatttgtactagagaaaaggaggttggaaacctg
tatgacatgttccacacacgcaactctttgcatcgcagagcttatcaacacaaagttggc
aacatcattgacacaatgattacagatgccttcctcgaagcagacccttacatagagata
acaggtactgaaggaaaaaagtatcacatttctacagcaattgatgacatggaagccttc
actaagctgacagataacatttttctggagattttatactctgctgatcccaaattggat
gctgcacgagcgattttaaagaaaattgaatgccgtaatctatacaagtttgtgggtgag
actcagcctataggacaaataaggattaaaaaggaaaactacgaaagccttccgaaaggg
gtcgccagtgctaaacccagtgacatggtgctagaaccggaactgaaggctgaagatttc
gtagtggatgttatcaacatggattacgggatggaagacaagaatcctattgatcatgtt
cgcttctattgtaagagtgagcccagccaggcaatcatgattactaaaaatcaggtttca
cagtttttgccagaggtatttgctgagcagctgattcgagtttattgtaagaagacggat
aaaaggagtctctatgctgcacaacagcatttcgttcactggtgtttaatcaataacttc
accaagccacaggatggtgatattgtagctccacttataacacctcgaaaattggagtgg
aattacacacattcagcccagagtccagctcacacccgagaagcatccaaattcaaagcc
cagctttttccagatgactcagtgtga
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