Phocoena sinus (vaquita): 116741276
Help
Entry
116741276 CDS
T07759
Symbol
ZSWIM8
Name
(RefSeq) zinc finger SWIM domain-containing protein 8 isoform X1
KO
K25207
zinc finger SWIM domain-containing protein 8
Organism
psiu
Phocoena sinus (vaquita)
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
psiu04121
]
116741276 (ZSWIM8)
Ubiquitin system [BR:
psiu04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul2 complex
Target recognizing subunit
116741276 (ZSWIM8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ZSWIM4-8_C
Motif
Other DBs
NCBI-GeneID:
116741276
NCBI-ProteinID:
XP_032463433
Ensembl:
ENSPSNG00000017427
LinkDB
All DBs
Position
16:25703474..25717824
Genome browser
AA seq
1903 aa
AA seq
DB search
MELMFAEWEDGERFSFEDSDRFEEDSLCSFISEAESLCQNWRGWRKQSAGPNSPTGGGGG
GGSGGTRMRDGLVIPLVELSAKQVAFHIPFEVVEKVYPPVPEQLQLRIAFWSFPENEEDI
RLYSCLANGSADEFQRGDQLFRMRAVKDPLQIGFHLSATVVPPQMVPPKGAYNVAVMFDR
CRVTSCSCTCGAGAKWCTHVVALCLFRIHNASAVCLRAPVSESLSRLQRDQLQKFAQYLI
SELPQQILPTAQRLLDELLSSQSTAINTVCGAPDPTAGPSASDQSTWYLDESTLTDNIKK
TLHKFCGPSPVVFSDVNSMYLSSTEPPAAAEWACLLRPLRGREPEGVWNLLSIVREMFKR
RDSNAAPLLEILTDQCLTYEQITGWWYSVRTSASHSSASGHTGRSNGQSEVAAHACASMC
DEMVTLWRLAVLDPALSPQRRRELCVQLRQWQLKVIENVKRGQHKKTLERLFPGFRPAVE
ACYFNWEEAYPLPGVTYSATDRKLALCWARALPPRPGASRSGGLEESRERPRPLPAEPAV
RPKEPGAKRKGLGEGVLSSQRGPRRLSAEGGDKALHKMGPGGGKAKALGGAGSGGKGSAG
SGSKRRLSSEDSSLEPDLAEMSLDDSSLALGAEASTFGGFPESPPPCPHPGGSRGPSTFL
PEPPDTYEEDGGVYFSEGPEPSTASAGPPGLLPRELCTRDDLASTDESGNGLPKTKEAAP
AVGEEEDDYQAYYLNAQDGAGGEEEKAEGGAGEEHDLFAGLKPLEQESRMEILFACAEAL
HAHGYSSEASRLTVELAQDLLANPPDLKVEPPPAKGKKNKVSTSRQTWVATNTLTKAAFL
LTVLSERPEHHNLAFRVGMFALELQRPPASTKALEVKLAYQESEVAALLKKIPLGPSEMS
TVRCRAEELREGTLCDYRPVLPLMLASFIFDVLCTPVVSPTGSRPPSRNWNNEMPGDEEL
GFEAAVAALGMKTTVSEAEHPLLCEGTRREKGDLALALMITYKDDQAKLKKILDKLLDRE
SQTHKPQTLSSFYSSSRPATASQRSPSKHGGPSAPGALQPLTSGSAGPAQPGSVAGAGPG
PTEGFTEKNVPESSPHSPCEGLPSEAALTPRPEGKVPSRLALGSRGGYNGRGWGSPGRPK
KKHTGMASIDSSAPETTSDSSPTLSRRPLRGGWAPTSWGRGQDSDSISSSSSDSLGSSSS
SGSRRASASGGARAKTVEVGRYKGRRPESHAPHVPNQPSEAAAHFYFELAKTVLIKAGGN
SSTSIFTHPSSSGGHQGPHRNLHLCAFEIGLYALGLHNFVSPNWLSRTYSSHVSWITGQA
MEIGSAALTILVECWDGHLTPPEVASLADRASRARDSNMVRAAAELALSCLPHAHALNPN
EIQRALVQCKEQDNLMLEKACMAVEEAAKGGGVYPEVLFEVAHQWFWLYEQTAGGSSTAR
EGATSCSASGIRAAGEAGRGLPEGRGVPGTEPVTVAAAAAAAVTAATVVPVISVGSSLYP
GPGLGHGHSPGLHPYTALQPHLPCSPQYLTHPAHPAHPMPHMPRPAVFPVPSSAYPQGVH
PAFLGAQYPYSVTPPSLAATAVSFPVPSMAPITVHPYHTEPGLPLPTSVACELWGQGTVS
SVHPASTFPAIQGASLPALPTQPSPLVSGGFPPPEEETHSQPVNPHSLHHLHAAYRVGML
ALEMLGRRAHNDHPNNFSRSPPYTDDVKWLLGLAAKLGDRHGDAAAAEPRSCPQPPTCPG
LPPTGAALPAGIHAVHPPPLDSPDPCRLRRLCERDPQCSQRLLPDTHGHDAVQRHPAESQ
AQQTDQGAVAAGLTRDDHLLPLSLAPLGPYTGTQACGYGDPSQRGNESWLDRSSPLSSLV
AQTGSCSWGQDVSDPRSLGLGETALSGRGRWVASGIYLAFINI
NT seq
5712 nt
NT seq
+upstream
nt +downstream
nt
atggagctgatgttcgcggagtgggaggacggagagcgcttctctttcgaggattcggac
cgctttgaggaggattcgctctgttctttcatctccgaggccgagagcctctgccagaac
tggcggggatggcgcaaacagtcagcggggcccaattcccccactggcggcggtggcgga
ggtggcagtggcggtaccagaatgcgagatggactggtgatcccgctggtggagctgtca
gcaaaacaggtggcgtttcatatcccatttgaagtggtggagaaagtttaccccccggtg
cctgagcagctccaactccgaattgctttttggagcttccctgagaatgaagaggatatt
cgactgtattcctgcctggccaacggcagtgcagatgagttccagcgaggggatcagcta
ttccgcatgagggctgtgaaggaccccctgcagattgggttccacctgagtgctacagtg
gtgccacctcagatggtcccccccaaaggggcctacaacgtggctgtgatgtttgaccgc
tgccgggtcacttcctgcagctgcacctgtggggctggggccaaatggtgcacccacgtc
gtggcactctgtctcttccgcatccacaacgcttctgcagtctgcctgcgggccccagtg
tcagagtccctgtctcgactgcagagggaccagctgcagaagtttgctcagtacctcatc
agtgagctccctcagcagatcctgcccacagcccagcgtctcctggatgaactcctctcc
tcccagtcaacagccatcaatacagtatgtggagccccagaccccacagcagggccgtct
gcctccgatcagagtacttggtatttggatgaatcaacactcactgacaacatcaagaag
acactgcacaagttctgtggcccctcccctgtggtgttcagtgatgtgaactccatgtat
ctgtcttccacggagcctccggctgctgctgaatgggcatgtctgctgcgcccactgagg
ggccgcgagccagagggagtctggaacttgcttagcatcgtgcgggagatgttcaagcgg
agggacagcaatgctgcccccttgttggaaatcctcaccgaccagtgcctcacctacgaa
cagataacaggctggtggtacagcgtgcgcacctcagcctcacacagcagcgccagtggg
cacacaggccgcagcaacgggcagtcagaggtggcggcccacgcatgcgccagcatgtgt
gacgagatggtcacactgtggaggctggctgtgctggaccctgcgctcagcccccagcgg
cgccgggagctgtgtgtgcagctgcgccagtggcagctgaaggtgattgagaacgtgaag
cggggacagcacaagaagaccctggagcggctcttccctggcttccggccggcggtggag
gcctgctacttcaactgggaagaggcctacccccttcccggtgtcacctacagtgccact
gacaggaagctggccctgtgctgggcccgagccctgccccctcggccaggtgcctcccga
tccgggggcctggaagaatcccgggagcggccccgccctcttcctgccgagccagctgtg
cggcccaaggagcctggggccaagcgcaagggattgggtgagggggtcctctcatcgcag
cggggtccccgccgcctctcggccgaggggggagataaggctctgcataagatgggtcca
ggtgggggcaaagccaaagcattggggggggctggcagtgggggcaagggctcagcaggc
agcgggagcaagcgacggctgagcagtgaagacagctccctggagccggatctggctgag
atgagcctggatgatagcagcctggccctgggtgcagaggccagcacctttggtggattc
ccggagagcccaccaccctgccctcaccctggtggctcccgaggcccttctaccttcctt
cctgaacctccagatacttatgaagaagatggtggcgtgtacttctcagaagggcctgag
ccttccacagcctctgctggcccccctggcctactgcccagggagctttgtacccgggac
gacctcgcttccacagatgagagtggcaatgggctccctaaaaccaaagaggcagcccct
gcggttggagaggaggaggatgactaccaggcgtattatctgaatgcccaggatggtgct
gggggcgaggaagagaaggctgagggcggggctggggaggaacacgacctgtttgccgga
ctgaagccactggaacaggagagccgcatggagatattatttgcctgtgctgaggccttg
catgctcacggctatagcagtgaggcctcccgcctcaccgtggagcttgcccaggacttg
ctagccaacccacctgacctcaaggtagagccgccccctgccaagggcaagaagaacaag
gtttctacgagccgtcagacctgggtggctaccaacaccctgaccaaggcggccttcctg
ttaacagtgctaagtgagcgcccagagcaccacaacctggccttccgagtgggcatgttt
gccttggagctacagcggcccccagcttccaccaaggccttggaggtgaagctggcatat
caggagtctgaggtggccgccctgctcaagaagattcctctgggtccgagtgagatgagt
actgtgcgctgccgggcagaggagcttcgggaggggacactctgtgattatcggcctgtt
ttgcctctcatgttggccagtttcatctttgatgttctctgtactccagtggtttctccc
acgggttcccggcccccaagtcgcaactggaacaacgagatgcctggggatgaggagctg
ggatttgaagcagcagttgctgccttgggcatgaagacaacagtgagtgaggcggagcat
cccctgctatgtgaaggcacacgtcgggagaagggtgacctggccctggcactaatgatc
acttacaaagacgaccaggccaaactcaaaaagatcttagacaaactcttggatcgagag
agccagacgcataaaccacagacactgagttcgttctactcatctagccgcccggccaca
gccagccagaggtctccttcaaagcatgggggcccatctgctccaggggccctgcaacct
ctgacctcaggctctgcagggcctgctcagccagggagtgtggcaggggctgggccaggc
cccactgagggcttcacagagaagaatgtgcctgagagttccccacattccccctgtgag
ggtctcccatctgaggcagctttgaccccaagaccagagggaaaggtccccagccgcttg
gctcttggcagccgtggaggctacaatggacggggctggggctcaccagggcggcctaag
aagaagcacacaggcatggccagcattgacagcagtgcccctgaaacgacgtcggatagc
tccccaaccttaagccggaggccacttcgagggggctgggcccctacctcctggggccga
ggacaggacagcgatagcattagcagctcttcctcagactcccttggctcctcgtcctcc
agtggaagtcgccgggccagtgccagtggaggggcccgggcgaagacagttgaagttggc
aggtacaagggccgccgtcctgagagtcatgccccccatgtacccaatcagccgtcagag
gcagctgcacacttctacttcgagctggcgaagacggtgctgatcaaggcagggggcaac
agcagcacttccattttcacacatccatcttcctcagggggccaccagggtcctcaccgt
aacctgcacctttgcgccttcgagattgggctttatgcccttggcctgcacaactttgtt
tctcccaactggctctcacgtacttactcttcccacgtttcctggattacaggccaggca
atggagattggcagcgcagccctgactatactggtagaatgctgggatgggcacctgaca
ccccctgaggttgcatccctggctgacagggcatcacgggcacgagactccaatatggtg
agggcagcggcggaactagccctaagctgcctgcctcatgcccatgcgttgaaccccaat
gagatccagcgggccctggtgcagtgcaaggagcaggataacctgatgttggagaaggcc
tgcatggcagtggaagaggcggctaagggtgggggcgtataccccgaagtgttgtttgag
gttgctcaccagtggttctggctatatgagcaaacagcaggtggctcatccacagcccgt
gaaggggctacaagctgtagtgccagtgggatcagggcagctggggaggctgggcggggg
ctgcctgagggcaggggggtcccagggactgagccggttacagtggcggcggcggcggca
gcagcagtgacagcagccacagtggtgccagtcatctcggtggggtccagtttatatccg
ggtccaggactggggcatggtcattcccctggcctgcacccctacactgctctacagccc
cacctgccctgcagccctcaatacctcacccacccagctcaccccgcccaccccatgcct
catatgccccggcctgccgtcttccctgtgcccagctctgcatacccacagggtgtgcat
cctgcattcctgggggctcagtacccttactcggtgactcccccctcacttgccgccact
gctgtgtctttccccgtcccttccatggcacccatcacagtacatccctaccacacagag
ccagggctcccactgcccaccagtgtggcctgtgagttgtggggacagggaacagtgagc
agtgtccatccagcttccacgtttccggccatccagggtgcctcactgcctgccctgccc
acacagcccagccctctggtgagcgggggttttccaccacccgaggaggagactcacagt
cagcctgtcaacccgcacagcctacaccacctgcacgccgcctaccgtgtcgggatgctg
gcactggagatgctgggtcgccgggcacacaatgatcaccccaacaacttctcccgctcc
cccccctacactgatgatgtcaaatggttgctggggctggcagcaaagctgggagatcgt
catggagacgctgcagcggctgagccccgctcatgcccacaaccacctacgtgccccggc
cttccaccaactggtgcagcgctgccagcaggcatacatgcagtacatccaccaccgctt
gattcacctgacccctgccgactacgacgactttgtgaacgcgatccgcagtgctcgcag
cgccttctgcctgacacccatgggcatgatgcagttcaacgacatcctgcagaatctcaa
gcgcagcaaacagaccaaggagctgtggcagcgggtctcactcgagatgaccaccttctc
cccctgagtctggcccccctagggccctatacagggacacaggcctgtggctatggggac
ccctcacaaagggggaatgaatcttggctggacagatcatccccactcagttccctggta
gcccagactggcagctgttcttggggccaagatgtctcagatcctagaagcctagggttg
ggggagacagccctgtctgggagggggcgttgggtggcctctggtatttatttggcattt
ataaatatataa
DBGET
integrated database retrieval system
