Phocoena sinus (vaquita): 116741363
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Entry
116741363 CDS
T07759
Symbol
JMJD1C
Name
(RefSeq) probable JmjC domain-containing histone demethylation protein 2C isoform X1
KO
K11449
jumonji domain-containing protein 1C [EC:1.14.11.-]
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu05202
Transcriptional misregulation in cancer
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09160 Human Diseases
09161 Cancer: overview
05202 Transcriptional misregulation in cancer
116741363 (JMJD1C)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
psiu03036
]
116741363 (JMJD1C)
Chromosome and associated proteins [BR:
psiu03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
116741363 (JMJD1C)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tudor_KDM3B
PWWP_KDM3B
DUF7030
JmjC
C1_2
zf-C5HC2
FYVE
Motif
Other DBs
NCBI-GeneID:
116741363
NCBI-ProteinID:
XP_032463521
Ensembl:
ENSPSNG00000015259
LinkDB
All DBs
Position
16:complement(16181058..16486585)
Genome browser
AA seq
2541 aa
AA seq
DB search
MAVETRPELVGKRFLCLAVGEEAQPERGESGRCCRGWRAGVIRAVSHRDSRNPDLAVYVE
FDHLEWDKREWVKVYEDFSTFLVEYHLIWARRNNPSQTQGSKSKQIQWPALTFKPLVEKS
IPSSITAVEFLVDKQLDFLTEDSAFQPYEDDIDSLNPVLRDNPQLQEEVKVWVKEQKVQE
IFMQGPYSLNGYRVRVYRQDSATQWFTGIITHHDLFTRTMIVMNDQVLEPQNVDPSMVQM
TFLDDVVHSLLKGENIGITSRRRSRASQNSNTVHGHYTRAQANSPRPAMNSQAAVPKQNS
HQQQRNIRPNKRKGSDSSIPDEEKMKEEKYDYIARGENAKGKNKQVMNKRRKPEEDEKKL
NMKRLRTDNVSDFSESSDSENSNKRIINNSSEQKPEHELKNKNTSKINGEEGKSQNNEKA
GEEALIDSQPPWDPIQEDKKHEETEKQKSVDSQIQEKMIIRSSEQATLSDHNSNDLLLQE
HNMEKTHTVELLPKEKFVSRPPTPKCVIDITNDTNTEKVVQENSSTFGLQTLQKMDPNIS
DSKHSVTNTKYLETANQDSDQSWVSDVVKVDLTQSNVRNASSGNENLNMEKERNQYVSYV
SSLSAVSVTEDKLHKRSPPPETIKSKLNTSVDAHKTKSNSSPEVVKPKINHSPESVKSKP
TFANSQTAGERRLANKIDHELSRCSFHPVPTRGSTLETTKSPLIIDKNEHFTVYRDPALV
GSDTGANHISPFLSQHPFPLHSSSHRTCLNPGTHHPALSPAPHLLAGSSSQTPLPAINTH
PLTSGPHHSVHHPHLLSAVLPGVPTASLLGGPPRLETAHASSLSHLALAHQQQQQLLQHQ
SPHLLGQAHPSASYNQLGLYPIIWQYPNGTHAYSGLGLPSSKWVHPENAVNAESSLRRNS
PSPWLHQPTPVTSADGIGLLSHIPVRPSSAEPHRPLKITAHSSPPLTKCLVDHHKEELER
KAFIEPLRSVASTSAKNDLDLTRSQTGKDGHLHRHFVDPVLNQLPRPPQETGERLNKYKE
EHRRILQESIDVAPYTTKIKGLEGERENYSRVAASSSSPKSHVIKQDKDVECSVADLYKM
KHSVPQSLPQSNYFTTLSNSVVNEPPRSYPSKEVSNIYTEKQSNTLGAAAANPQTLTSFI
SSLSKPPPLIKHQPESEGLVGKAPEHIPHQIASHSVTTFRNDCRSPTHLTVSSTNTLRSM
PALHRAPVFHPPIHHSLERKESSYSSLSPPTLTPVMPVNAGGKVQESQKPPTLIPEPKDT
QANFKSSSEQSLTEMWKSNNNLSKEKAEWHVEKSSGKSQAAMASVIVRPPSSAKLDSMPA
MQLASKDRVSERSSIGANQTDCLKSAEAGESGRIILPSVNSDSAHIKSEKNFQAVSQGSV
PSSVMSPVNTMCNTKTDIFTSAATTTNVSSWGGSEIIYSLSNTILASKSLECTSSKSVSH
SVAQTQECRVSTTAPVTPASSKTGSAVQSSSGFSGTTDFIHLKKHKAALAAAQYKSSNVS
EPEPNAVKNQTSSASPLLDSTVVCSTINKANSVGNGQASQTSQPNYHTKLKKAWLTRHSE
EDKNTNKMENSGNSVSEIIKPCSVNLIASTSNDLQNSVDSKIIVDKFVKDDKVNRRKAKR
TYESGSESGDSDESESKSEQRTKRQPKPTYKKKQNDLQKRKGEIEEDLKPNGVLSRSAKE
KSKWKLQSNNNSAGIPRSVLKDWRKVKKLKQTGESFLQDDSCCEIGPNLQKCRECRLIRS
KKGEELTHSPVFCRFYYFRRLSFSKNGVVRIDGFSSPDQYDDEAMSLWTHENYEDDEVDI
ETSKYILDIIGDKFCQLVTSEKTALSWVKKDAKIAWKRAVRGVREMCDACEATLFNIHWV
CQKCGFVVCLDCYKAKERKSSRDKELYAWMKCVKGQPHDHKHLMPTQIIPGSVLTDLLDA
MHTLREKYGIKSHCHCTNKQNIQVGNLSAMNGVSQVLQNVLNHSNKISLCMPESQQQNTP
QKPESNGNSSPESDVSTDSKVAPPESQSPLHWLADLAEQKAREEKKENKEFALEKQIKEE
REQDNPDSPNSRTSPPVSQNNEQGSTLRDLLTTTAGKLRVGSTDAGIAFAPVYSMGTPSG
KSGRTMPNILDDIIASVVENKIPPNKASKINVKPELKEEPKENRKPAMDENNKLYSDIPH
SWICEKHILWLKDYKNINNWKLFKECWKHGQPAVVSGVHKKMNISLWKADSISLDFGDHQ
ADLLNCKDSIISNANVKEFWDGFEEVSKRQKTKGGETVVLKLKDCPSGEDFKTMMPARYE
DLLKSLPLPEYCNPEGKFNLASHLPGFFVRPDLGPRLCSAYGVAAAKDHDIGTTNLHVEV
SDVVNILVYVGIAKGNGILSKAGILKKFEEEDLDDILRKRLKDSSEIPGALWHIYAGKDV
DKIREFLQKISKEQGLEVLPEHDPIRDQSWYVNKKLRQRLLEEYGVKACTLIQFLGDAIV
LPAGALHQVQNFHSCIQVTEDFVSPEHLVQSFHLTQELRLLKEEINYDDKLQVKNILYHA
VKEMVRALKIHEDQVEAMEEN
NT seq
7626 nt
NT seq
+upstream
nt +downstream
nt
atggcggtggagacgcggccggagctggtggggaaacggttcctgtgcctggcggtcggc
gaagaggcgcagccggagcgcggggagagcggacgctgctgccggggctggcgagcgggg
gttatccgagcggtgtcacatagggacagccgcaatcccgacttggcggtgtatgtggaa
tttgatcatcttgagtgggataaacgagagtgggttaaagtttatgaagatttttcaacc
ttcttggtggaataccacttaatctgggccagaaggaacaaccctagccagactcaggga
tcaaagagcaaacagattcagtggcctgcattgactttcaaacccctggttgaaaaaagt
atacccagttcaatcactgcagtagaattccttgtagataaacaactggattttttaact
gaagatagtgcctttcagccctacgaggacgacatagacagcctaaacccagttctcagg
gacaacccgcaacttcaggaagaagtgaaagtctgggtaaaggaacaaaaggttcaggag
atttttatgcaaggtccttattccttgaatggatacagagtgagagtatatagacaagac
tctgccacccagtggtttactggcataattactcatcatgatctcttcactcgcaccatg
atcgttatgaatgatcaggtactagaaccacagaatgtcgatccttctatggttcaaatg
acctttctagatgatgttgttcactctttgttaaaaggtgaaaatattggcattacatca
cggcgaaggtctcgtgccagtcaaaatagcaacactgttcacggtcattatacacgtgcc
caagcaaatagtcccagaccagcaatgaactcccaagctgctgtaccaaaacagaattca
caccagcaacaaagaaatattcgtccaaataagaggaagggctcagatagcagtatacca
gatgaagagaagatgaaggaggaaaaatatgattatatagcacgaggagaaaatgctaaa
ggtaaaaacaaacaggtgatgaacaaaagaaggaaacctgaggaggatgaaaagaaacta
aatatgaaaagactacgaaccgacaatgtttcagacttttctgagagcagtgactcagaa
aattcaaataagagaataataaataattcctcagagcagaagccagagcatgagttgaaa
aataaaaatacttcaaagataaatggagaagaaggaaaatcccagaataatgagaaggca
ggagaagaggcactaatagatagccagcctccctgggatccaatacaggaagataaaaaa
cacgaagaaacagagaaacagaagtctgttgactctcagattcaagaaaaaatgattatc
cgttcatcagaacaggccacactttctgatcacaattctaatgatttacttcttcaggaa
cacaatatggagaaaacacacacagtggaattattaccaaaggagaagtttgtatccaga
ccacccacaccaaaatgtgttattgacattacgaatgacactaatacggaaaaggtggtt
caggaaaactcaagtacctttggccttcagacacttcagaaaatggatcctaacattagt
gattcaaaacattcagtcacaaatacaaaatacttggaaacagcaaaccaagattctgac
cagagctgggtcagtgatgtagttaaagtagatttaacccagtcaaatgttaggaatgct
tcttcaggaaatgaaaacctgaatatggaaaaagagagaaatcagtatgtctcttacgta
tcttctcttagtgcagtttctgtcacagaagataagctgcataagcgaagtccaccccca
gaaactataaaatctaaacttaatacttcagtagatgctcacaagacaaagtccaattcc
tcacctgaagttgttaaacctaaaattaaccattcccctgagtctgtaaagtctaagccc
acttttgcaaacagccaaactgctggtgaaagaagactggcaaataagatagaccatgag
ttatcaagatgcagctttcatccggttcctactagaggcagtacattagaaactacaaaa
agccctcttatcattgataaaaatgagcatttcacagtttacagagatcctgcacttgtc
gggtcagatacaggagctaatcacatttcacctttcttaagccagcatccttttcctctt
cattcttcatcccatagaacgtgtttaaatccaggtacccatcaccctgccttaagtcct
gcaccccacttactggctggatcatccagtcaaactccattacctgccattaacactcat
cctctgactagtggtccacaccattctgttcatcaccctcacttactttctgccgtgtta
cctggagtgcctactgcctccttactcggtggccccccacgactggagactgctcatgcc
agcagcttgagccacttagcactagcacaccagcaacagcagcagttgttacagcaccag
tcacctcatcttcttggacaagcccacccatctgcttcatataatcagcttggactttat
ccaattatttggcaatatccaaatggaacacatgcatactcaggacttggtctgccttct
tctaagtgggttcacccagaaaatgcagttaatgctgaatcttcgttgaggaggaattct
cccagtccttggttacatcagcctacccctgtgacctcagcagatggtattggattactt
agtcacattcctgtcagaccttccagtgcagagcctcatcggcctcttaaaattacagca
cattccagtccaccattgacaaaatgtttagtagatcatcataaagaggaattggagagg
aaagcttttattgaaccactgcgttctgttgcatccacatcagccaaaaatgacctggat
ctaactaggtcacagacgggaaaagatggtcacttgcataggcattttgtggatcctgta
ttgaatcaattaccgagaccaccccaggagactggagagagattaaacaaatataaggag
gagcaccgtcgaatccttcaagaaagtattgatgttgctccctatacaactaaaatcaag
gggcttgagggtgagagagagaattattccagagtagcagcgtcatcctctagccctaaa
agccatgtcatcaaacaagacaaagatgtagaatgttcagtagcagatctttataagatg
aagcattcagtgcctcagagtttgcctcaaagtaactatttcactacgttgtctaatagt
gtagtcaatgaaccaccaaggtcatacccatccaaagaggtttcaaacatttacactgaa
aaacagagtaatacccttggagcagcagcagctaaccctcagactctgacttcgtttata
tcatctctttcaaagcctccacctttgattaaacaccaaccggaaagtgaaggtttagta
ggcaaggcaccagaacatattccccatcaaattgcttctcactcagtaacaactttcaga
aatgactgtaggagtcctactcatttgacagtttcttctacaaatacactccggagtatg
cctgctttgcatagagcacccgtatttcacccaccaatccatcatagcctggagagaaag
gaaagcagctatagtagcctttcccctccaacattaactccagtgatgcctgtaaatgct
ggtgggaaggttcaagaatcacaaaagcctccgactctgattcctgagcctaaagacact
caggcaaattttaagagttcttctgaacagagtttgacagaaatgtggaaatctaataat
aacctcagcaaagagaaagctgaatggcatgtggagaaaagcagcggaaagtcacaggct
gctatggcatctgtcattgtacgtccaccttctagtgcaaaacttgatagcatgccagca
atgcagttagcttccaaagatcgagttagtgaaagatcttcaattggggcaaatcaaaca
gattgcctcaaatcagcagaagctggagagagtggaagaatcattctgccaagtgtgaat
tcagacagtgctcacataaaatccgaaaaaaactttcaggctgtctcacagggcagtgtt
cccagttcagtcatgtctcctgtaaatacaatgtgtaataccaaaacggatatattcaca
tctgctgccactaccaccaatgtttccagctggggtggttcagaaataatttactcttta
tcaaataccattttggcctctaaatctttagaatgtacctcttcgaaaagtgtcagtcat
tcagtggctcaaacacaagaatgcagggtcagcacgacagctccagttacaccagccagt
agtaagacaggaagtgctgttcaatccagctctgggttctcaggcacaactgattttatc
catttaaaaaagcacaaggcagcactggctgcagctcagtataaaagtagtaatgtcagt
gagcctgagcctaatgctgtgaaaaatcagacatcttcagcctcccctctcttggatagc
actgtagtctgtagtacaattaacaaagcaaactctgtaggaaatgggcaagcatcccag
acaagtcaaccaaactaccatactaaactgaaaaaggcctggcttacaagacattcagaa
gaagataaaaatactaataaaatggaaaattcagggaattctgtatcagaaattattaag
ccatgttctgtcaatttaatagcctctacgtcgaatgatctacaaaatagtgtagatagt
aagatcatagttgataaatttgtaaaagatgataaagtcaataggagaaaagccaaacga
acttatgaatctggctctgaaagtggagattcagacgaaagtgaaagcaaatcagagcaa
aggactaaaaggcaacctaagccaacttacaaaaagaagcaaaatgatcttcagaagaga
aaaggtgaaatagaagaagacttaaaacccaatggggttctcagcaggagtgccaaagaa
aaaagtaaatggaagttgcagagcaacaataatagtgctggcatccctcgttcagtatta
aaagactggcgtaaagtcaagaagctgaagcaaactggggaatcctttttacaggatgac
tcctgctgtgagatagggcctaatttgcaaaagtgccgagaatgtagacttattcggagt
aagaagggagaagaactaactcactcaccagtgttttgtagattttactactttagacga
ttgtcttttagtaaaaatggagtggttagaatagatggcttctcttctcctgaccaatat
gatgatgaagctatgagtctatggacacatgaaaattatgaagatgatgaagtagacata
gaaacttcaaaatacatcttggatataataggtgataagttctgtcagttagtaacatct
gaaaaaacagctttgtcctgggtgaaaaaggatgccaaaattgcctggaaaagagcagtg
agaggagtccgggagatgtgtgatgcgtgtgaagcaacattgtttaacattcattgggtt
tgtcaaaaatgtggatttgtggtctgcttagattgttacaaggcaaaggaaaggaagagt
tctagagataaagaactgtatgcttggatgaagtgtgtgaagggacagcctcatgatcac
aaacatttaatgccaactcaaattatacctggttctgttttgacagatcttctagatgcg
atgcacactcttagagaaaaatatggtattaaatcccattgtcattgtactaacaaacag
aatatccaagttggaaatctttctgctatgaatggtgtgtctcaagttttacagaatgtt
cttaatcacagtaataaaatttctctgtgcatgcctgagtctcagcagcaaaatacccct
cagaagccagagagtaatggcaacagcagcccagagagtgatgtaagcacggacagcaag
gtagctcctccagaatcccagtcaccactgcactggttagcagatcttgcagagcaaaag
gccagagaggaaaaaaaagaaaacaaagaatttgcccttgaaaagcaaattaaagaagag
agagaacaagacaaccctgattctcccaatagcagaacatcacctcctgtgtcccagaat
aatgaacaaggctcaacattacgagatttgctgaccacaacagctggcaagctacgtgtg
ggttctacagatgctggcattgcctttgcaccagtttattcaatgggaacccccagtggt
aaaagtggaaggactatgccaaacattcttgatgacataattgcttcagttgttgaaaac
aaaattccaccaaataaagcctctaagataaatgtaaaaccagagctcaaagaagaacct
aaagaaaacagaaaacctgccatggatgaaaacaataaattgtacagtgatataccacat
tcttggatctgtgagaagcatattctgtggcttaaggattataaaaatattaataattgg
aagcttttcaaagagtgttggaaacatggacaacctgcagtggtttctggtgtgcataag
aaaatgaacattagcttgtggaaggcggactcaattagtcttgattttggagaccaccag
gctgatctcctgaactgcaaagacagcattatttcaaatgccaatgttaaggaattctgg
gacggttttgaagaagtttcaaaacggcaaaaaacgaaaggtggagaaacagttgtttta
aaactgaaagattgcccttcaggagaagacttcaagactatgatgccagcaagatatgaa
gatcttttaaaaagcctgccattgccagaatattgtaatccagaaggaaaattcaatttg
gcctctcatttgccaggattttttgtacgccctgatctaggacccaggttgtgcagtgct
tatggtgtagctgctgctaaagatcatgatataggaacaacaaatctacatgttgaagtt
tctgacgttgtaaatattttagtatatgttggcatagcaaaaggaaatggcattctctca
aaagcaggaatacttaagaaatttgaagaagaagatttagatgacattttaagaaaacga
ttgaaggactcaagtgaaatacctggtgctctgtggcatatttatgctgggaaagatgtt
gacaagataagggaatttcttcagaagatttcaaaagaacaaggccttgaagttctacca
gaacatgatccaattcgtgaccagagttggtatgtgaacaaaaagcttcgccaaagactg
cttgaggaatatggagtcaaagcctgcactcttattcagttccttggtgatgccattgtc
ttaccagcaggagcacttcatcaggtacagaattttcacagctgtattcaggtaactgaa
gactttgtgtctccagaacatctagtacagtcatttcatttaacacaagaactgagactt
ttgaaggaagaaatcaattatgatgataagctacaggttaaaaatatcttgtatcatgca
gtcaaggaaatggtgagagctttgaagatacatgaagatcaagtagaggctatggaagaa
aattag
DBGET
integrated database retrieval system
