Phocoena sinus (vaquita): 116741503
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Entry
116741503 CDS
T07759
Symbol
TAF5L
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L isoform X1
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
116741503 (TAF5L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psiu03021
]
116741503 (TAF5L)
03036 Chromosome and associated proteins [BR:
psiu03036
]
116741503 (TAF5L)
Transcription machinery [BR:
psiu03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
116741503 (TAF5L)
Coactivators
SAGA/TFTC/STAGA complex
116741503 (TAF5L)
Chromosome and associated proteins [BR:
psiu03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
116741503 (TAF5L)
STAGA complex
116741503 (TAF5L)
TFTC complex
116741503 (TAF5L)
SAGA complex
116741503 (TAF5L)
SLIK complex
116741503 (TAF5L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
Beta-prop_CAF1B_HIR1
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
TFIID_NTD2
EIF3I
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
ANAPC4_WD40
WDR90_beta-prop_4th
Beta-prop_SCAP
WD40_MABP1-WDR62_1st
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
NBCH_WD40
RMC1_N
Beta-prop_DCAF4
Beta-prop_HPS5
Beta-prop_SPT8
Beta-prop_Vps41
Beta-prop_Nup120_160
Beta-prop_WDR19_1st
Beta-prop_EIPR1
WD40_RFWD3
PEP5_VPS11_N
PROPPIN
WD40_like
eIF2A
Nbas_N
Beta-prop_IP5PC_F
WD_LRWD1
Ge1_WD40
vATP-synt_AC39
Mala_s_1-like
Motif
Other DBs
NCBI-GeneID:
116741503
NCBI-ProteinID:
XP_032464048
Ensembl:
ENSPSNG00000011894
LinkDB
All DBs
Position
16:complement(1949451..1976279)
Genome browser
AA seq
640 aa
AA seq
DB search
MACVEISSESIKCCIIDDLVGAKMVCSGKWNLMIQSGFSDYRDAGVEDVMKRVRTEQIQM
AVSCYLKRRQYGDADGPLKQGLRLSQSAEEMATSLAVQSESGCANIVSAAPCQAEPQQYE
VQFGRLRNFLTDSESQHSHEVMPLLYPLFVYLHLNLVQSSPKSTVESFYSRFHGMFLQNA
SQKDVIEQLQTTQTIQDILSNFRLRAFLDNKYVVRLQEDSYNYLLRYLQSDNNTALCRVL
TWHIHLDVQPAKRTDYQLYASGGPSRGGGEGGGLEPADVPAPILQNEAALEVLQESIKRV
KDGPPSLTTICFYAFYNTEQLLNTAEVSPDSKLLAAGFDNSCIKLWSLRSKKLKSEPHQV
DVSRIHLACDILEKEDDEDDNAGTEMKVLRGHCGPVYSTRFLADSSGLLSCSEDMSIRYW
DLGSFTNTVLYQGHAYPVWDLDISPHSLYFASGSHDRTARLWSFDRTHPLRIYAGHLADV
DCVKFHPNSNYLATGSTDKTVRLWSTQQGNSVRLFTGHRGPVLSLAFSPNGKYLASAGED
QRLKLWDLASGTLYKELRGHTDNITSLTFSPDSSLVASASMDNSVRIWDIRSAHCSAPAD
GSSSELVGVYTGQMSNVLSVQFMACNLLLVTGITQENQEH
NT seq
1923 nt
NT seq
+upstream
nt +downstream
nt
atggcttgcgttgagatttccagcgagagcatcaagtgctgtatcatagatgatttggta
ggagcgaagatggtgtgttctggaaaatggaatttgatgattcagagtggcttcagtgac
tacagagacgctggtgttgaagatgtcatgaaacgggtgcgcaccgagcagattcagatg
gccgtgtcctgctacctcaaacgccggcagtacggggacgcggacggcccactgaagcaa
ggcctgcggctgtcgcagagcgccgaggagatggccaccagcctcgcagtccaatcagaa
tctggttgtgccaacatagtgtctgcggccccttgccaggcagagccccagcaatatgaa
gtgcagttcggacggctgcggaatttcctcaccgattctgaatcccagcacagccatgaa
gtgatgcctctcctctaccccctctttgtctacctccacctcaacctggtccagagcagt
cccaagagcacggtggaaagcttttacagccgcttccacggaatgtttctgcagaatgcc
agccagaaggacgtcatcgagcagctgcagaccacccagaccatccaggacatcctgtct
aacttccggctgcgggccttcctggacaacaagtacgtggtccgcctgcaggaagacagc
tacaactaccttctccgctacctccagagtgacaataacaccgccctgtgcagagtcctc
acctggcacatccacctggacgtgcagcccgccaagaggacggactaccagctctacgcc
agtggcggcccctcccggggcgggggcgagggcggcggcctggagcctgccgatgtgccc
gcgcccatcctgcagaacgaggccgcgctggaggtcctgcaggagagcattaagcgtgtc
aaggacggccccccctctctcaccaccatctgcttctacgccttctacaacacggagcag
ctgctgaacacggcggaggtctccccggacagcaagctgctcgccgctggctttgacaac
tcctgtataaaactgtggagtctgcgctccaagaagttaaaatcggaaccgcatcaagta
gacgtgtcccgcatccacttggcttgtgatatcttggagaaggaggacgacgaggacgat
aacgcaggcacggagatgaaggtcctgcggggacactgcgggccagtgtacagcaccagg
ttccttgcggacagctcagggctgctctcctgctctgaggacatgtccatcaggtactgg
gacctcggcagcttcaccaacaccgtgctgtaccagggccacgcctaccccgtgtgggac
ctggacatcagccctcacagcctgtacttcgccagtgggtcccacgaccgcacggccagg
ctgtggtcatttgatcggacgcacccgctacgcatctacgccgggcacctggcagacgtg
gactgcgtcaagttccaccccaattcaaactacttagccacgggctcgaccgacaagacg
gtccggctgtggagcacccagcaggggaactcggtgaggctcttcacgggccaccgcggc
cccgtgctctctctggccttttcccccaatggtaagtacttggcatcggcgggcgaggac
cagcggctgaagctgtgggacttggcttccgggaccctctacaaagagcttcggggccac
acggacaacatcaccagcctcaccttcagcccggacagcagcctggtcgcgtcggcgtcc
atggacaattcggtgcgcatctgggacatcaggagcgcgcactgcagcgcacccgctgac
ggctcgtccagcgagctcgtgggcgtctacactggccagatgagcaacgtgctgagcgtg
cagttcatggcctgcaacctcctgctggtgaccggaatcacacaagaaaatcaggaacat
tga
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integrated database retrieval system
