Phocoena sinus (vaquita): 116741597
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Entry
116741597 CDS
T07759
Symbol
CHD1L
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1-like isoform X1
KO
K20092
chromodomain-helicase-DNA-binding protein 1-like [EC:5.6.2.-]
Organism
psiu
Phocoena sinus (vaquita)
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
psiu03036
]
116741597 (CHD1L)
Chromosome and associated proteins [BR:
psiu03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
116741597 (CHD1L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
HDA2-3
DEAD
SWI2_SNF2
AAA_22
SLFN-g3_helicase
ATP-synt_E
Torsin
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
116741597
NCBI-ProteinID:
XP_032464302
Ensembl:
ENSPSNG00000004698
UniProt:
A0A8C9B8E4
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All DBs
Position
1:108148153..108199523
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AA seq
898 aa
AA seq
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MEREGAATREGGMPGFLQTLQSESRVEAARVQEQDLRQWGLTGIHLRPYQLEGVNWLAQR
FHCQNGCILGDEMGLGKTCQTIALFIYLAGRLNDEGPFLILCPLSVLSNWKEEIERFAPG
LSCVTYSGDKEERAHLQQDLRKESHFHVLLTTYEICLKDALFLKSFPWSVLVVDEAHRLK
NQSSLLHKTLSEFSVVFSLLLTGTPIQNSLRELYSLLSFVEPDLFSKEQVEDFIQRYQDI
EKESESASELYKLLQPFLLRRVKAEVATELPKKTEVVIYHGMSALQKKYYKAILMKDLDA
FENEMAKKVKLQNVLSQLRKCVDHPYLFDGVEPEPFEIGGHLIEASGKLHLLDKLLAFLY
SKGHRVLLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEERHLAIKNFGQQPIFIFLLS
TRAGGVGMNLTAADTVIFVDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVC
RKAASKLQLTNTIIEGGHFTLGAQKPAAHADLQLSEILKFGLDKLLSSEGSTMDEIDLES
ILGETKDGQWISGALPTAEERSREQEEGKNHMYLFEGKDYSKEPSKEDRKSFEQLVNLHK
TLLEKTSQEGRLLRHKGSVLIPGLVEGSTKRKRILSPEELEDRRKKRQEAAAKRKKLLEE
KKRSKEEAEHKKKMAWWESNDYQSFCLPSDESEPEDLEDWEDERSAQLDCEDPDSTSIKY
VSGDVTHPQAGAEDAVIVHCVDDSGRWGRGGLFTALEKRSAEPRKIYELAGKMKDLSLGG
VLLFPIDDKESRSKGQDLLALIVAQHRDRANVLSGIKMAALDEGLKKIFLAAKKKKASVH
LPRIGHATEGFNWYGTERLIRKHLASRGIPTYIYYFPRSKAAILHPQASSSSLGQPVP
NT seq
2697 nt
NT seq
+upstream
nt +downstream
nt
atggagcgtgagggcgctgcgacccgcgagggcggcatgcccggctttctacagactctt
cagagcgagagccgagtcgaggcggcgcgggtgcaggagcaggacttgcggcagtggggc
ctgacagggatccatctacgcccttatcagctggagggagtcaactggctagcccaacgc
ttccattgtcagaatggctgcatactgggagatgagatgggcttgggtaagacctgccag
actattgctctcttcatttacttggcaggaagattaaatgatgaaggaccatttctgatt
ctttgtcccttgtctgttttgagcaactggaaagaagagattgagagatttgctccaggt
ctttcctgtgtaacatattcaggtgacaaggaggagagagcccacctacagcaagaccta
aggaaggagtcacattttcatgtgctgctaactacctatgagatttgcttgaaagatgca
ttgtttctaaagtccttcccttggagtgttcttgttgtggatgaagctcacaggttgaaa
aaccaaagctccttgctgcataagacactttcagagttttcagtcgtcttcagtctcctg
ttgaccggaactcccatccagaacagccttcgagagctctactctctcctcagttttgtg
gagcctgatctcttttccaaggagcaggtggaagatttcattcagcgttaccaggatatt
gagaaagagtctgagtcagcaagtgaactatacaaactcttgcagccatttctgctgagg
cgagtgaaagctgaggtagccacagagcttcccaagaagacggaagtagtgatataccat
ggcatgtcagcgctgcagaaaaaatactacaaggccattttgatgaaagacctagacgcg
tttgaaaatgagatggcaaagaaagttaaacttcagaatgtcttgtcccagcttcgaaag
tgtgtggatcacccatatttatttgatggtgtggaaccagagccttttgaaattggaggt
cacctgatagaggccagtgggaaacttcaccttctggataagctgctggcattcctgtat
tccaagggccatcgagttttacttttctctcaaatgacccagatgttggatattctccaa
gactacatggattatagaggctacagctatgagcgtgtggatggctccgtgagaggagaa
gagagacacctggccatcaagaactttggacagcagcccatctttatttttctcctgagt
accagggcaggtggagttggcatgaacttaacggcagcagataccgtgatttttgttgat
agtgatttcaatccgcagaatgacttgcaagcagctgccagggctcaccgaattggccag
aacaagtccgttaaagtcattcggctgattggccgagacactgtggaagaaatagtctgt
agaaaagcagcctccaagctgcagctcaccaacaccatcatagaagggggccattttact
ctgggagcccagaaacctgctgcgcatgctgacctccagttgagtgagatactcaaattc
ggtttggataaactgctgtcctctgaggggagcaccatggatgaaatagacctggagtct
atcctgggagaaacaaaagatggccagtggatctctggtgccctgccgacagcagaagaa
agaagcagagaacaagaggaaggaaaaaaccacatgtacttatttgaaggtaaagattat
tctaaggagcctagtaaagaagacagaaaatcatttgagcaactggtgaatcttcacaaa
acccttttggagaagactagtcaagagggccggttactccgacataaaggcagtgttctc
atcccaggccttgtggaggggtctaccaaaaggaagcggattctgagcccagaagagctg
gaggacaggaggaagaaaagacaagaagcagcagccaagagaaagaaactattagaggag
aagaagaggagcaaggaagaagcagaacataagaaaaagatggcttggtgggagtccaac
gattaccagtccttctgcctgccttccgacgagagcgaaccagaggacctggaggactgg
gaagacgaacgctctgcccaactggattgtgaggacccggactcgacctccatcaagtat
gtaagcggtgatgtcacccacccacaggctggggcggaggatgctgtcatcgtgcactgt
gtagatgactccggccgctggggcagaggtggtttattcacagctctggaaaaaagatct
gctgagccaagaaaaatatatgagctggctgggaaaatgaaagatttgagtttgggaggt
gtccttttatttcctattgatgataaagagtcaagaagcaaagggcaagatttgttggcc
ttgattgtggcccagcaccgtgatcgtgccaatgtcctgtctggcattaagatggcagcc
ctagacgagggcctgaagaagatatttttagcagcaaagaaaaagaaagcaagtgtccat
cttccacgcattggacatgccacggaaggttttaactggtatggtactgagcgacttatt
cggaaacacttggcctcaagaggcatcccaacttacatctactactttcctagaagcaag
gctgccatccttcatccacaggcctcatcttcctccttaggacagccggtgccttaa
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