KEGG   Phocoena sinus (vaquita): 116741832
Entry
116741832         CDS       T07759                                 
Symbol
TAF5
Name
(RefSeq) transcription initiation factor TFIID subunit 5
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
psiu  Phocoena sinus (vaquita)
Pathway
psiu03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:psiu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    116741832 (TAF5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:psiu03021]
    116741832 (TAF5)
   03036 Chromosome and associated proteins [BR:psiu03036]
    116741832 (TAF5)
Transcription machinery [BR:psiu03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     116741832 (TAF5)
   Coactivators
    SAGA/TFTC/STAGA complex
     116741832 (TAF5)
Chromosome and associated proteins [BR:psiu03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     116741832 (TAF5)
    STAGA complex
     116741832 (TAF5)
    TFTC complex
     116741832 (TAF5)
    SAGA complex
     116741832 (TAF5)
    SLIK complex
     116741832 (TAF5)
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_WDR3_1st Beta-prop_THOC3 WD40_Prp19 WD40_Gbeta TFIID_NTD2 WD40_CDC20-Fz Beta-prop_WDR3_2nd WD40_WDHD1_1st Beta-prop_WDR36-Utp21_2nd Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd EIF3I Beta-prop_EML_2 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_EML WDR55 Beta-prop_WDR36-Utp21_1st NBCH_WD40 WD40_MABP1-WDR62_1st ANAPC4_WD40 Beta-prop_WDR75_1st Beta-prop_TEP1_C Beta-prop_SCAP Beta-prop_IFT122_1st Beta-prop_Aladin WDR90_beta-prop_4th Beta-prop_RIG_2nd Beta-prop_Vps41 Beta-prop_VPS8 Beta-prop_IFT140_1st Beta-prop_EIPR1 Beta-prop_WDR41 Beta-prop_DCAF4 WD40_RFWD3 Beta-prop_HPS5 Beta-prop_SPT8 Beta-prop_WDR19_1st WD_LRWD1 Tricorn_2nd Beta-prop_DCAF12 Beta-prop_Nup120_160 PEP5_VPS11_N RAB3GAP2_N CDK5RAP3 Beta-prop_RIG_1st Cytochrom_D1 eIF2A Beta-prop_ACSF4 LisH_PAC1 ABM-like PROPPIN Late_protein_L2
Other DBs
NCBI-GeneID: 116741832
NCBI-ProteinID: XP_032464819
Ensembl: ENSPSNG00000018939
UniProt: A0A8C9CTA8
LinkDB
Position
16:59593388..59608100
AA seq 800 aa
MAALAEEQTEVAVKLEPEGPPTLLPPQTGDSAGEGGGGTTNNGPNGGGGNVAASSSAGGD
GGTPKPSVAVSAVAPAGAAPVPAAAPEAGAPHDRQTLLAVLQFLRQSNLREAEEALRREA
RLLEEAVAGSGAPGEADGAGAETASALLSRVTASAPGPAAPDPPVSGASGSAAVSGLATG
PAAPGKVGSVAVEDQPDVSAVLSAYNQQGDPTMYEEYYSGLKHFIECSLDCHRAELSQLF
YPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDF
RTSKFVLRISRDSYQLLKRHLQEKQNNQIWNIVQEHLYIDIFDGMPRSKQQIDAMVGSLA
GEAKREANKSKVFFGLLKEPEIEVPLDDEDEEGENEEGKPKKKKPKKDSIGSKSKKQDPN
APPQNRIPLPELKDSDKLDKIMNMKETTKRVRLGPDCLPSICFYTFLNAYQGLTAVDVTD
DSSLIAGGFADSTVRVWSVTPKKLRSVKQAADLSLIDKESDDVLERIMDEKTASELKILY
GHSGPVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYF
VSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGN
CVRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHSDTVCSLRFS
RDGEILASGSMDNTVRLWDAIKAFEDLETDDFTTATGHINLPENSQELLLGTYMTKSTPV
VHLHFTRRNLVLAAGAYSPQ
NT seq 2403 nt   +upstreamnt  +downstreamnt
atggcggcgctggcggaggagcagacggaggtggcggtcaagttagagcctgagggaccg
ccgacgctgctacctccgcagacgggggacagcgctggcgagggtggcggcggcacaacc
aacaacggccccaacggcggcggtgggaacgttgcggcatcgtcgtcggccggcggggat
ggtgggacccccaaaccctcggtggctgtctctgccgttgccccagcgggggcggccccg
gtgcccgccgctgctccggaggccggcgctccccacgaccgacagactctgctggccgtg
ctgcagtttctacggcagagcaacctccgcgaggccgaagaggcgctgcgccgtgaggcc
cggctgctggaggaggcagtggcgggctccggagccccgggagaggcggacggcgccggc
gctgagacggctagcgcgcttcttagtcgggtcaccgcctcggcccccggccctgcggcc
cccgaccctccggtcagcggtgcttcggggtccgccgccgtctcgggcttagcgacaggt
cctgcggctccggggaaagttggaagtgtagctgtggaagaccagccggatgtcagtgcc
gtgctatcagcctacaaccaacaaggagaccccacaatgtatgaagaatactatagtgga
ctgaaacacttcattgaatgttccttggactgccatcgggcagagttatcccaactcttt
tatcccctatttgtacacatgtatttggaactagtctacaatcaacatgagaatgaagca
aaatcattctttgagaagttccatggagatcaggaatgttattaccaggatgacctacga
gtattatctagtcttaccaaaaaggaacacatgaaagggaatgagaccatgttggatttt
cgaacaagtaaatttgttctgcgtatttcccgagactcgtaccaactcttgaagaggcat
cttcaggagaaacagaacaatcagatatggaacatagttcaggagcacctctacattgac
atctttgatgggatgccgcgtagtaagcaacagatagatgcgatggtgggaagtttggca
ggagaggctaaacgagaggcaaacaaatcaaaggtattttttggtttattaaaagagcca
gaaattgaggtgcctttggatgatgaggatgaagaaggagaaaatgaagaaggaaaacct
aaaaagaagaagcctaaaaaagatagtattggatccaaaagcaaaaaacaagatcccaat
gctccacctcaaaacagaatccctcttcctgagttgaaagattcagataaattggataag
ataatgaatatgaaagaaaccaccaaacgagtacgccttgggccagactgtttaccctca
atttgtttctatacattcctcaatgcttaccagggcctcactgcagtggatgtcactgat
gattctagtttgattgctggaggttttgcagattcaactgtcagagtgtggtctgtgaca
cccaaaaagcttcgtagtgtcaaacaagcagcagatcttagcctcatagataaagaatct
gatgatgtcttagaaagaatcatggatgagaaaacagcaagtgagttgaagattttgtat
ggtcacagtgggcccgtctatggagccagcttcagtccagataggaactacctgctttcc
tcttcagaagatggaactgttagattgtggagtcttcaaacatttacctgcttggtggga
tataaaggacacaactatccagtgtgggacacacagttttctccatatggatattatttt
gtgtcagggggccacgaccgagtagctcggctctgggctacagatcactatcagccttta
aggatatttgctggccatcttgctgatgtgaattgtaccagattccatcccaattctaat
tatgttgctacgggctctgcagacagaactgtgcggctctgggatgtcctgaatgggaac
tgtgtaaggatcttcactggacacaagggaccaattcattccttgacattttctcccaat
gggagattcctggctacaggagcaacagatggcagagtactcctttgggatattggacat
ggtttgatggttggagaattaaaaggccacagtgatacagtctgttcacttagatttagt
agagatggtgaaattttggcatcaggttcaatggataatacagtacggttatgggatgct
atcaaagcatttgaagatttagagactgatgactttactacagccactgggcatataaat
ttacctgagaattcacaggagttattgttgggaacatatatgaccaaatcaacaccagtt
gtacacctccattttactagaagaaacttggttctagctgcaggagcttatagtccgcaa
taa

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