Phocoena sinus (vaquita): 116742041
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Entry
116742041 CDS
T07759
Symbol
CFAP43
Name
(RefSeq) cilia- and flagella-associated protein 43
KO
K24223
cilia- and flagella-associated protein 43
Organism
psiu
Phocoena sinus (vaquita)
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
psiu03037
]
116742041 (CFAP43)
Cilium and associated proteins [BR:
psiu03037
]
Motile cilia and associated proteins
Tether/Tether head (T/TH) complex
116742041 (CFAP43)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_EML_2
WD40_WDHD1_1st
WD40_Prp19
Beta-prop_EML
WD40_CDC20-Fz
CFAP43_N
RMC1_N
Motif
Other DBs
NCBI-GeneID:
116742041
NCBI-ProteinID:
XP_032465218
Ensembl:
ENSPSNG00000019933
LinkDB
All DBs
Position
16:complement(60289416..60390508)
Genome browser
AA seq
1668 aa
AA seq
DB search
MAQGRERDEAHNVALGASLSVRWVQGFPRQNVHFVSDSTICYPCGNFIIFINIETKKKTV
LQCMNGIVGVVATNVPHEVVAFSDRRLRPLIYIYNFPGLTRRIKLKGNVLLDYTLLSFSY
CGTYLASYSSLPEFELALWNWEAGVILCKKSQPGIDVSQMTFNPMNWHQLCLSSPSAVTV
WTIERSNQEHYLEAKSVKLPLEDGSLCNETDVVFPQSLPKDPVYGPVLPVSAVAGLVGEE
AETFRPKDDLYTLVHPTMHCWTPTSDLYVGCEEGHLLMISGENLKVTVLNKIEDGPPRVG
RNLISPVTMAYQKGGVLASGIDGFVYSFLIKDTNYKVEDFLEVEGPVEHLMFSPSYRMLL
IQTDKGSIYIYTFDEEPTFEKLLAACDGKFQATDFITPGNEYCMTLTQSGEVCVWGIEDG
ACVSRIYLNIPATVLACSPSSLSAAVGTKGGFVHFLNIQDVESPHSVHKAYLSESPVQHL
LYDQRGIYLLVGTSEGHVFVINAKPSSLFQILGFIEVGKGILQISTVSPLETDVVEVMVL
SPLPETGRSRLEIFTLPKILPQVSASFADERGRLRDAFIHKFVYEIEHTLSSAVLNFQSN
RIYGFCNQAPYICSYLLPEKEHSGICILKSYQKVQSKQYGPGMLSLSPHGLWLITIAKCG
ILCIRDIHTLETFVQCRSHSHQGRGIQSVRISMDGQSILVNGKDDGTLVNLRWRQFGGNL
ANEILEYSQQLPAYLRSTMDEENDYLSIAKKDSLDLGSEPEHAINENVRLSDDSLQEELV
KVDNTVEIPWIQQKSQEAIKNEVKLFSNKRKEIKRGIKALAKTILDMMEENEAVDNIAKL
EQQEFGLDLEELERLHDESEEEVAKIRKDAEMQNLAKRYLAELIKGECWNSMAVKGRALK
CFHIPRVVENFPMKERTDEELKELKRVVQQKEMEAECLKLQKEMVEVQSAITLVKKHHEE
EDEEEEEDGTAKDTNLPNYLLGSLSTDFRVPTSLLSSQLELHSREEKINQIILLKDIIYK
VKTAFNNEFDAAYKQKEIEIARVKEKNVRIQEIVLDLELEETVWQPEFEDCEKPERTLIV
ESTEITAQRHINPQQKAKTELLVTREMERLLLSQGTTTRRRALMDMMGGVLEVKKEDILR
MVIPQPAFMSKPDALWSEKERKQFKEYEKKVKELNEERDKYRKSLETEMKKLQNSIQEST
QNFDEHLKRLFERRVRAEMAVSQEELKIINLVFSLLLDEEISSREAFLNNYLARKQEEKS
QTTEAIRKSREDLDMYKEHYDNLLAEDKVLDRSFKKEFSEIPSHQVDILYKLFKRRPRIH
KQKVHSDTTSLVPFGERPGSGKLNKDAFAQLMKAMDDLDSINNMPQGLDPSVWEHFCMTR
RAKVENEQKVKQKAAGLIEMVAFLQRRTEDDEKVQHEIEKVSRELTLLQEDKVKFQLNLT
IQILLKQGQVELENFQLLLDYSDAILINKNIIEDLNSVIRTQGQKKVASMMESKEVHKGI
FQIEWEHKKMEMEMEDLNQKARDIQMLFFSRDRQKYLNEPNYETMIAIQIGIMEQTITVL
DKTHKKNVENCKKLLKKLRRYSNQKDVANYTLSCNLREELVAVSERKDICNAVGSTLTCE
KIAKERYENMIQQQKLTKISKEQAEQISILQAEVERLRMKTFPALVQM
NT seq
5007 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaaggccgggagcgagatgaagcccacaacgtcgccctcggcgcgtccctgtct
gtgagatgggtgcaaggattccccaggcagaatgttcattttgtcagcgacagcaccatt
tgctacccttgtgggaatttcataatatttattaatattgaaaccaagaaaaagactgta
ctccagtgtatgaatggaattgtgggtgtcgtggcaactaacgttcctcatgaggttgtg
gctttttctgaccggcggctgagacccctcatctacatatacaactttcctggattaacc
agaaggatcaaattaaaaggcaatgttcttctggactacactttactttcgttcagttac
tgtggcacctacctggctagttactcctccctcccagaatttgaactggccctctggaac
tgggaagcgggtgtcattttgtgcaagaaatcacaacccggtatagatgtgagccagatg
acttttaaccccatgaactggcaccagttgtgcttgtcaagtccaagtgcagtgactgtg
tggacaatcgaaagaagtaaccaggagcattatctcgaagcaaagtcagtaaaactgcct
ttggaagatgggtcactttgtaatgaaacagatgtagtttttccccaatcattgcccaaa
gatcctgtctatggacctgtgctccctgtgtcagccgttgccggactagtgggtgaagag
gcagaaactttcaggcctaaagacgatctatatactttggttcacccgactatgcactgc
tggactccaacaagtgacctatatgttggctgtgaagagggtcatcttttaatgattagt
ggagaaaacttgaaggtaactgtgcttaataagatagaagacggaccaccaagggttgga
agaaatcttatcagtccagtcaccatggcatatcagaagggaggcgtgcttgcttctgga
attgatggctttgtgtattcttttcttattaaagatacaaattacaaagtagaggatttt
cttgaggttgaagggcctgtggaacatttgatgttttctcccagttacagaatgttgctg
attcagacagacaagggatctatttatatatacacttttgatgaggagccaacctttgaa
aaactcctagcggcttgtgatgggaaatttcaggcaacagactttatcacacctggaaat
gaatactgcatgactctcacacagtcaggagaagtttgtgtttggggtatagaggatggt
gcttgtgtcagcaggatttatctgaatatcccagcaacagttctggcttgctctccctcc
tccctctctgcagccgtggggaccaagggtggctttgtccacttcctcaacatccaggac
gttgaatcccctcactcagttcataaggcctatctctctgaatcgcccgtgcagcacctc
ctgtatgaccagagaggaatatatctattagttggaacatcagaaggacacgtctttgtt
atcaatgccaaaccctcaagcttatttcagattcttggattcatagaggtgggcaaaggc
attttacaaatatccacagtgtctcctttggaaacagatgtagtagaagtgatggtgctt
tccccacttccagaaacaggaagaagcaggctggaaatatttactctgcctaaaatacta
ccacaagtttctgcaagctttgctgatgaacgagggaggctgagagatgcattcattcat
aagttcgtgtatgagatagagcatactctgtcctcagctgtcttgaactttcaaagtaac
cgaatatatggcttctgtaaccaagcgccatacatctgcagctatcttcttcctgaaaaa
gagcatagtggtatttgcattcttaagtcataccaaaaagtacaaagcaagcaatatgga
cctggaatgctctctctgtctccacatggattgtggctcataacaatagctaagtgtgga
attctgtgtatccgagatattcatactttggaaacatttgttcagtgtcggagtcattct
caccaggggcgtggaattcaatcggtgagaatttcaatggatggacagagcattctggtg
aatgggaaggatgacggcacccttgttaacctgagatggaggcagtttggaggaaactta
gccaatgaaatccttgaatatagccagcaacttccagcttacctgaggagcaccatggat
gaggagaatgattatttaagtatagcaaaaaaagattccttggatttgggatcagaacct
gaacatgcaataaatgagaatgtgaggttaagcgatgactcattacaagaggaattagtc
aaagttgataatacggtggaaataccctggatacaacaaaaaagccaagaggccatcaaa
aacgaggttaaactgttttccaacaaaaggaaagagataaaaagaggaatcaaagcactt
gctaaaactattctggacatgatggaagaaaatgaagcagtagataatattgcaaaatta
gagcaacaagaatttggtctggatcttgaagaactggaaagactccacgatgaaagtgag
gaagaagtggcaaagataagaaaggatgctgagatgcaaaacctagccaagagatatttg
gctgaacttatcaaaggagaatgctggaattcgatggctgtgaaaggccgagctcttaag
tgctttcacatcccacgtgtggttgagaacttcccaatgaaagaacgcacagatgaggag
ctgaaagaattgaagagagtcgtgcagcaaaaagagatggaagcagagtgtcttaaacta
cagaaggaaatggtagaggttcagtctgcaattacattggttaaaaagcatcatgaagag
gaggatgaagaagaggaagaagatgggacagcaaaagataccaacttgcccaattacctg
cttggtagtctgagtactgattttagggtacctacctctttgttgtcaagccaactggaa
cttcattccagagaggagaaaatcaaccaaattatattactgaaagatattatttacaag
gtaaaaactgctttcaataatgagtttgatgcggcatataaacaaaaagagattgaaatt
gcacgtgtgaaggaaaaaaatgtaagaattcaagaaatcgttttggatctggagttggaa
gaaacagtctggcaaccagaatttgaggactgtgagaagccagagagaacccttattgtg
gaaagtactgagattacagctcagagacatattaatccacagcaaaaagccaaaacagaa
ttgcttgtgacccgtgaaatggagcgattgcttctgtcacagggcaccaccacaagacgc
cgagccctcatggacatgatgggaggagttctggaagtcaagaaggaagacattttgaga
atggtgattcctcaacctgctttcatgtcaaaacctgatgctttgtggtctgaaaaggaa
aggaaacaattcaaagagtatgagaaaaaagtcaaggaattaaatgaagaaagagataag
tatagaaagtcattagaaacagaaatgaagaaacttcaaaactctattcaagaaagcaca
cagaattttgatgaacatttgaaaagactctttgaaaggagagtgagggcggagatggct
gtcagccaggaggaattgaaaataatcaaccttgtgttttccttactgttggatgaagaa
ataagctccagagaagccttcctgaacaactaccttgcaaggaagcaggaggagaaaagc
cagactacagaggccatccggaaatctagagaagacctcgatatgtacaaggaacactac
gacaacttactggcggaagacaaagttctagatcgcagctttaaaaaggaattttctgaa
attcccagtcatcaggtggatatactctacaaactttttaaacgccgaccaaggattcac
aaacaaaaagtgcactcagatacgaccagtcttgtgccttttggagagcgaccaggatct
gggaaattgaataaggatgcctttgcccagttaatgaaagccatggatgacttggacagt
attaataacatgccacaaggcttggacccctccgtctgggaacatttctgcatgaccaga
cgagcgaaagtggaaaatgaacagaaagtaaagcagaaagcagctggcttaatagaaatg
gtggctttcctccagaggagaactgaggatgatgagaaggtgcaacatgaaattgaaaaa
gtgtcccgtgagctcaccctattacaggaagacaaagtgaaattccagttgaatttgaca
atccaaatcctccttaaacaagggcaagtagaactggagaatttccagttactgctggat
tattctgatgcaatcctcatcaacaagaacataattgaagacttgaattctgtgattcgg
actcaaggacaaaagaaagttgctagcatgatggaaagtaaagaagtccacaaaggaata
tttcagatcgagtgggaacataagaaaatggagatggaaatggaagatctaaatcagaag
gctcgggatattcagatgctgtttttctcaagagatcgtcaaaagtacctaaatgaacca
aactatgagactatgattgccattcagattggaataatggagcaaaccattactgtttta
gataagacccacaaaaagaatgtggaaaactgcaaaaagctgcttaaaaaactgagaagg
tacagcaatcaaaaagatgtagcaaattataccctaagctgcaatttacgagaagaactg
gtggctgtctcagagagaaaagacatctgtaatgcagtggggtctacactgacttgtgaa
aagattgccaaagaacgatatgaaaacatgatacaacagcaaaagttaacaaaaatttca
aaagaacaagctgagcagatttcaatactacaggctgaagttgaaagattaaggatgaaa
acatttcctgctctcgttcaaatgtaa
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integrated database retrieval system
