Phocoena sinus (vaquita): 116742135
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Entry
116742135 CDS
T07759
Symbol
CHD7
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 7 isoform X1
KO
K14437
chromodomain-helicase-DNA-binding protein 7 [EC:5.6.2.-]
Organism
psiu
Phocoena sinus (vaquita)
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
psiu03036
]
116742135 (CHD7)
Chromosome and associated proteins [BR:
psiu03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
116742135 (CHD7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
BRK
Chromo
Helicase_C
ResIII
DEAD
HTH_CHD1_Hrp3
HDA2-3
MUN
Motif
Other DBs
NCBI-GeneID:
116742135
NCBI-ProteinID:
XP_032465248
LinkDB
All DBs
Position
17:7738227..7917699
Genome browser
AA seq
3026 aa
AA seq
DB search
MADPGMMSLFGEDGNIFSEGLESLGECGYPENPVNPMGQQMPIDQGFASLQPSLHHPSAN
QNQTKLTHFDHYNQYEQQKMHLMDQPNRMMSNAPGNGLASPHSQYHTPPVPQVPHGAGGG
GGGGGGGGGGSGGGGGGGQMGVYPGLPNERHGGQSFVDGGSMWAPRAVQVPDQIRAPYQP
PPPQPQAAPSGPPAQGHPPHLQQLGGYLARGDFSMQQHGPPQPRMGQFPPGQEGLGQGSP
FIAGPGHLSHVPPQSPGVAPSLRHAVQPFHHHPPAALHGEPVAHSPRFSPNPPPQGAVRP
QTLTFSSRSQTVPSPTINNSGQYSRYPYSNLNQGLVNNTGMNQNLGLTNNTPMNQSVPRY
PNAVGFPSNSGQGLMHQQPIHPSGSLNQMNTQTMHPSQPQGTYASPPPMSPMKAMSNPAG
TPPPQVRPGSAGIPMEVGSYPNMPHPQPSHQPPGAMGIGQRNMGPRNMQPSRPFMGMSPA
PRELAGHLRANGCPGVGLTDPQAIQDRLLPGQQHPGQPPAFQQLPSCPPLQPHPGLHHQA
SPPPSHHQPWAQLHPSPQSAPQKVPVPQHSPSEPFLEKPVPDMTQVSGPNAQLVNSDDYL
LSVEQQPQQKKKKKKNNHIVAEDPSKSFGKDDFPGGVDNQELNRNSLDGSQEEKKKKKRP
KAKKDPKEPKEPKEKKEPKEPKTPKAPKIPKEPKEKKAKTATPKPKSSKKSSNKKPDSEA
SALKKKANKGKTEGSENSDLDKTPPSSPPPEEDEDPGVQKRRSSRQVKRKRYTEDLEFKI
SDEEADDADAAGRDSPSTTSQSEPQESVDADGPVVEKIMSSRSVKKQKESGEEVEVEEFY
VKYKNFSYLHCQWASVEDLEKDKRIQQKIKRFKAKQGQNKFLSEIEDELFNPDYVEVDRI
MDFARSTDDRGEPVTHYLVKWCSLPYEDSTWELRQDIDQAKIEEFEKLLSREPETERVER
PPADDWKKSESSREYKNNNKLREYQLEGVNWLLFNWYNMRNCILADEMGLGKTIQSITFL
YEIYLKGIHGPFLVIAPLSTIPNWEREFRTWTELNVVVYHGSQASRRTIQLYEMYFKDPQ
GRVIKGSYKFHAIITTFEMILTDCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKLMDLE
HKVLLTGTPLQNTVEELFSLLHFLEPGRFPSETTFMQEFGDLKTEEQVQKLQAILKPMML
RRLKEDVEKNLAPKEETIIEVELTNIQKKYYRAILEKNFTFLSKGGGQANVPNLLNTMME
LRKCCNHPYLINGAEEKILEEFKETHNADSPDFQLQAMIQAAGKLVLIDKLLPKLKAGGH
RVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTR
AGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITRNSYEREMFDK
ASLKLGLDKAVLQSMSGRENAPNGVQQLSKKEIEDLLRKGAYGALMDEEDEGSKFCEEDI
DQILLRRTHTITIESEGKGSTFAKASFVASGNRTDISLDDPNFWQKWAKKAELDIDALNG
RNNLVIDTPRVRKQTRLYSAVKEDELMEFSDLESDSEEKPCTKPRRPQDRSQGYARSECF
RVEKNLLVYGWGRWTDILSHGRYKRPLSEQDVETICRTILVYCLNHYRGDENIKSFIWDL
ITPTADGQTRALVNHSGLSAPVPRGRKGKKVKAQSSHPVVQDADWLAGCNPDALFQEDSY
KKHLKHHCNKVLLRVRMLYYLRQEVIGDQAEKILEGADSSEADVWIPEPFHAEVPTDWWD
KEADKSLLIGVFKHGYEKYNSMRADPALCFLERVGMPDAKAIAAEQRGTDMLADGGDGGE
FDREDEDPEYKPTRTPFKDEIDEFANSPPEDKEEPMEIRGPGKHSEGSAELGQLYWPNTS
TLTTRLRRLITAYQRSYKRQQMRQEALMKTDRRRRRPREEVRALEAEREAIISEKRQKWT
RREEADFYRVVSTFGVIFDPAKQQFDWNQFRAFARLDKKSDESLEKYFSCFVAMCRRVCR
VPAKPDGEPPDLPSAIEPITEERASRTLYRIELLRKIREQVLRHPQLAERLRLCQPSLDL
PEWWECGRHDRDLLVGAAKHGVSRTDYHILNDPELSFLDAHKTFAQTRGAAGAPALSALA
LGFGQTPAAAAAVAAAAAATAAPGQEEKAGGAEAKAGEAGEAEAEEEEVEGGGKDRKQDR
EAEAEPGAGKSDPRGAEVGADMGPKSISEKGSEEDEEEKLEDDDKSEESSQPEAGTVSRG
KNFDEESNASMSTARDETRDGFYMEDGDPSVAQLLHERTFAFSFWPKDRVMINRLDNICE
AVLKGKWPVNRRQMFDFQGLIPGYTPPTADSPLQKRSLAELSMVGQASISGSEDLTASPQ
LSKEDALNLSVPRQRRRRRRKIEIEAERAAKRRNLMEMVAQLRENQVVSENGQEKVVDLS
KASREAASSTSNFSSLTSKFILPNVSAPMSDAFKTQMELLQAGLSRTPARHLLNGSLVDG
EPPMKRRRGRRKNVEGLDLLFMSHKRTSLSAEDAEVTKAFEEDIETPPTRNIPSPGQLDP
DTRIPVINLEDGTRLVGEEAPKNKDLVEWLKLHPAYTVDMPSYVPKNADVLFSSFQKPKQ
KRHRCRNPNKLDINTLTGEERVPVVNKRNGKKMGGAMAPPMKDLPRWLEENPEFAVAPDW
TDIVKQSGFVPESMFDRLLTGPVVRGEGASRRGRRPKSEIARAAAAAAAAAVASTSGINP
LLVNSLFAGMDLTSLQSLQNLQSLQLAGLMGFPPGLATATAAAAAAGGDTKNPAAVLPLV
LPGVAGLPSMFGLGGLLNTPLSAAAAAAAAAAAGNTAAAAGPAEPEDGACKAEEKGNENE
DENKDSEKSTDAVPGPDSANGSVGAATAPAGLPSNPLAFNPFLLSTMAPGLFYPSMFLPP
GLGGLTLPGFPALAGLQNAVGSGDDKAPDKAEGGAFQEEETLEGSDAEESLDKTAESSVL
EDEIAQGEELDSLDGGDEIENNENDG
NT seq
9081 nt
NT seq
+upstream
nt +downstream
nt
atggcggatccaggaatgatgagtcttttcggcgaggacgggaatattttcagcgaaggc
ctcgaaagcctgggagaatgtggttaccctgaaaatcccgtgaatcccatgggtcagcag
atgccgatagaccaaggctttgcctccttacagccgtccctccaccatccctccgcgaat
cagaatcaaaccaagttgacccacttcgatcactataatcagtacgagcagcaaaagatg
catctgatggaccagccgaacagaatgatgagcaatgcccctgggaacggactggcgtct
ccccactcgcagtaccacaccccgcccgtcccccaggtcccccacggggcgggcggcggc
ggcggcggtggcggcggcggcggcggcggcagcggcggcggcggcggcggcggccagatg
ggtgtctaccccggcctgccgaacgagcggcacggggggcagtctttcgtggacggaggc
tccatgtgggctccccgggccgtgcaggtgccggaccagatccgagccccctaccagccg
ccaccgccacagccccaggcggccccgtcggggccccccgcgcagggtcaccccccgcac
ctgcagcagctgggcggctacctggcgcgcggggacttctccatgcagcagcacgggcca
ccgcagccgaggatgggccagtttcccccgggccaggagggcctcggtcagggaagcccc
ttcatcgccggccccggccacctgtcgcacgtgcccccgcagagccccggggtggcgccg
agcctgcgccacgcggtgcagcccttccaccaccatccccccgccgctctccacggggag
cccgtagcccacagcccccggttctcccccaaccctcccccgcaaggggccgtgaggccg
cagaccctcacctttagttctcggagccagaccgtcccctcacctactataaacaactca
gggcagtattctcgctatccttacagtaacctaaatcagggattagttaacaatacaggg
atgaatcagaatctaggccttacaaataatactccaatgaaccagtccgtcccaagatac
cccaacgctgtaggattcccatcgaacagtggccaaggactcatgcaccagcagcctatc
caccctagcggctcccttaaccaaatgaacacgcaaactatgcacccttcgcagcctcag
ggaacttacgcctctccgcctcccatgtcacccatgaaagcaatgagtaacccggcgggc
acccctcctccgcaagtccggcccggaagtgccgggatcccgatggaagtcggcagttac
ccaaatatgcctcacccgcagccgtctcaccagccccctggcgccatggggatcggacag
aggaacatgggccccaggaacatgcaaccgtcccgtccgtttatgggcatgtccccggcg
ccgagggagctggccgggcacctgagagccaacggttgtcccggcgtcggcctcacagac
ccgcaggcgatccaggaccggctgctccctggccagcagcaccccgggcagccgccggcc
ttccagcagttgccaagctgccctccgctgcagccccatccgggcctgcaccaccaggct
tcgcccccgccctcgcatcaccagccttgggcacagctccacccctcgccccagagcgcc
ccgcagaaagtgcctgtgccgcagcattctccatcggagccctttctagagaaaccagtg
ccggatatgactcaggttagtggaccgaacgctcagctagtgaacagtgatgattacctg
ctgtccgtagaacagcagccgcagcagaagaagaagaaaaagaaaaacaaccacattgtt
gcagaggatcccagtaaaagtttcggtaaagatgacttccctggtggggttgataaccaa
gaactaaacaggaactcgctagatgggtcccaagaagagaaaaagaaaaagaaaaggccg
aaggcaaaaaaagatcccaaggaaccgaaagaacccaaggagaagaaagagcccaaggaa
cccaagaccccgaaagcccctaagattcccaaagagccaaaggaaaagaaagcaaaaact
gccacgccaaaacccaaatccagcaaaaagtcaagtaataagaaacctgattcagaagca
agtgctttgaagaaaaaggccaacaagggaaaaacagaaggttctgagaattcagactta
gacaaaacacccccatcatctcctcctcctgaagaagacgaggacccaggtgttcagaag
agacggtccagcaggcaggtgaagagaaagcggtacaccgaggacttggagttcaagatc
tccgacgaggaggccgatgacgcagacgctgctgggagagactcgccctccacaacctcg
cagtcggagccgcaggaatctgttgatgcagacggtccagtggtagaaaaaattatgagt
agtcgttcagtaaaaaaacagaaggaatctggagaagaggtagaagttgaggagttctac
gtgaaatacaaaaacttctcttatcttcattgtcaatgggcatctgtagaagatctggaa
aaagataagagaattcagcaaaagattaaacgatttaaggcaaagcagggccagaacaaa
ttcctttcagagattgaagatgagctttttaatccagattacgtggaggttgaccggata
atggactttgcacgtagcacagatgaccggggagagcctgtgactcactacctggtgaag
tggtgctcactgccttatgaagacagcacgtgggagctgaggcaggacatagaccaagcc
aagatcgaagagtttgagaagctgctgtcccgggagccggaaacagagcgcgtggagcga
cctcctgctgatgactggaagaaatcggagagttccagggagtataaaaacaataacaaa
ctcagggaataccagttggagggagtaaactggctacttttcaattggtacaacatgcga
aactgcattttagcagatgaaatgggtttgggaaaaactatccagtccattacatttctc
tatgagatatatttgaaaggaatccatggcccttttttagtaattgccccattgtccaca
atccccaactgggaaagggaattccggacctggacagagttgaacgtggttgtgtatcat
gggagtcaagctagtcgtcggaccattcagttgtatgaaatgtacttcaaagatccccag
ggtcgagtgataaaggggtcctataagtttcatgccatcatcactacgtttgagatgatt
ctgaccgattgtcctgagctgcggaatattccctggcgctgcgtggtcattgatgaagcc
cacaggctgaagaatcggaactgcaagctgttggagggactcaagctgatggacttggaa
cacaaagtgctgctgacagggaccccgctccagaacaccgtggaagagctcttcagcttg
cttcacttcttggaaccaggtcgattcccttcggaaaccacctttatgcaagaattcggt
gatctgaaaaccgaagaacaggtgcaaaaactccaggctattctaaagccaatgatgttg
agacgtctcaaagaggacgtggaaaagaacttggcccccaaggaagaaacgatcatcgaa
gtcgagctaacaaacattcagaagaaatattaccgagccatccttgagaagaattttacg
tttctttccaaaggtggtggtcaagctaacgtacccaaccttttaaacactatgatggaa
ttacggaagtgctgcaatcatccctaccttattaacggtgctgaagagaagattttggaa
gagtttaaggaaacacacaatgccgactctccagatttccagctccaggcgatgatccag
gctgctgggaagctcgtgctgattgacaagctgctgccgaagctgaaggccggcggccac
agggtgctcatcttctcccagatggtgcgctgcctggacatcctggaagactacctcatt
cagagacggtacccgtacgaaaggatcgacggccgggtcagagggaacctccgccaggca
gctatcgacaggttctccaaacctgactctgataggtttgttttcctcctgtgtacaagg
gcaggaggtttaggcattaatcttactgctgctgatacctgcatcatctttgattccgac
tggaatccccaaaatgatctccaggctcaggctagatgtcacagaataggacagagcaaa
tctgtgaaaatctacaggctgattacaaggaattcttacgagagggagatgtttgacaaa
gctagcttgaagctcggtctggataaagctgtcctgcagtccatgagcggaagagaaaac
gctcccaacggggtacagcagctttccaagaaagaaatagaggatcttctccggaaaggg
gcctatggtgccctcatggatgaggaggacgaagggtctaaattctgcgaagaagatatc
gaccagattctcctccggcgaacccacaccatcaccatcgagtctgagggaaagggctcc
acgtttgctaaggccagttttgttgcatctggaaacaggacagatatttccttggatgat
ccaaatttctggcaaaagtgggctaagaaggcggaattggatattgatgccttaaatggg
aggaacaacctggttattgacactccaagagtgaggaagcaaaccaggctgtacagtgca
gtgaaggaggacgagctgatggaattttcagacctggagagcgattctgaagagaagccc
tgcacgaagccacggcggccgcaggacaggtcccagggctatgccaggagcgagtgcttc
agagtagagaagaacctgcttgtctatggctgggggcgctggacagacatcctttcccat
ggccgctacaagcgtccgctcagcgagcaggacgtggaaaccatctgcaggactatcctc
gtgtactgcctcaaccactaccggggggacgagaacatcaagagcttcatctgggatctg
atcacacccacggccgacggccagacgcgagccctggtcaaccattccggtttatcagcc
ccggtgcccagggggcggaagggcaaaaaggtgaaagcccagagctcgcatccagtggtg
caggacgctgactggctggccggctgcaacccagatgccctgttccaggaggacagctac
aagaagcacctgaagcaccactgcaacaaggtcctgctgcgtgtccgcatgctgtactac
ctgagacaagaagtgataggagaccaggcggagaagatcctagagggcgccgactcaagt
gaagctgatgtgtggatacctgagcctttccacgcggaagtccccacagattggtgggat
aaggaagctgataagtccctcctgattggagtgttcaagcacgggtacgagaagtacaat
tccatgcgagctgaccccgcgctgtgcttcctggaacgagttggtatgcccgatgccaag
gccatcgctgccgagcagagaggaacagacatgctagcagatggcggtgatgggggagag
tttgatagagaagatgaagacccagaatataaaccaaccagaacaccgttcaaggatgaa
atagatgaatttgcaaattctcctccagaagataaggaagaacccatggaaatacgcggc
ccaggcaagcacagcgagggcagcgctgagttaggccagctgtactggcccaatacctcg
accctgaccacccgtctgcgcaggctcattaccgcctatcagcgcagctataaaaggcag
cagatgaggcaggaggccctgatgaagaccgaccggcggagacgtcggccccgggaggaa
gtgcgggccctggaagctgaaagggaggctataatatcggagaaacggcagaagtggacg
agacgggaagaggcggacttttaccgcgtggtgtccacgtttggggttatttttgaccca
gcgaaacagcagttcgactggaaccaattccgagcctttgccaggcttgacaagaagtcc
gatgagagtctggagaagtacttcagctgcttcgtggccatgtgccggcgggtgtgtcgc
gtgcccgccaagccagatggcgagccgcccgacctgccctcggcgatcgagcccatcacg
gaggagcgcgcctcgcgcaccctgtaccgcatcgagctgctgcggaagatccgcgagcag
gtgctgcgccacccgcagctggccgagcggctccggctctgccagcccagcctggacctg
cccgagtggtgggagtgcggcaggcacgaccgggacctgctggtgggcgccgccaagcac
ggggtcagtcgcacggactaccacatcctcaacgaccccgagctctccttcctggacgcg
cacaaaaccttcgcccagacccgaggggcggccggcgccccggccctgagcgctctggcc
ctgggctttggccagacgcccgccgccgccgccgccgtcgccgccgccgccgccgccacc
gccgccccgggccaggaggagaaggcgggaggggcggaggccaaggccggggaggcgggg
gaggccgaggcagaggaggaggaggtcgagggcggcgggaaggaccggaagcaggaccgc
gaggccgaggccgagcccggcgctgggaagagcgatccgagaggggcggaggtcggtgcg
gacatggggcccaagtccatttcagaaaagggttccgaggaggatgaagaggaaaagctg
gaggacgatgacaagtcggaagagtcttcccagcccgaagcaggaactgtctcgagaggg
aagaattttgatgaagagagcaatgcttccatgagcactgctagggatgagacccgagac
ggattctacatggaggatggagatccgtccgtagctcagctccttcatgaaagaacgttt
gccttctcattttggcctaaggatcgagtaatgataaaccgattagacaacatctgtgaa
gcagtgttgaaaggcaaatggccggtaaataggcgccagatgtttgatttccagggcctc
atccccggctacacgccccccactgccgacagccccctgcagaagaggagcctggccgag
ctctccatggtgggccaggcgagcatcagcggcagcgaggacctcaccgcttcccctcag
ttgtccaaggaagacgccctcaacctctccgtccctcgccagaggaggaggaggaggaga
aagatcgaaatcgaggccgaaagagctgccaagcggcgaaacctcatggagatggttgcc
cagctgcgggagaatcaggtggtctcggaaaacggacaagagaaagttgtcgatttatca
aaggcctcgagagaggcagcaagctctacctcaaatttttcatctcttacttcaaagttt
atcttgcctaatgtctcggcgcccatgtctgatgcctttaagactcaaatggagctgctc
caggcaggcctgtcccgcacgcccgccaggcatctgctcaacggctcccttgtggacgga
gagcctcccatgaagaggaggcggggaaggaggaaaaacgtggagggcctcgacctgctg
ttcatgagccacaaacggacgtcattgagtgcagaggatgctgaggtgaccaaagctttt
gaagaagatatagagaccccacctacaagaaacattccttctcctggacagctggaccca
gacacgcggatccctgttataaatctcgaagatgggactaggctggtgggggaagaagct
cctaaaaataaggacttagtcgaatggctgaagctgcatcccgcttacactgttgatatg
ccaagttacgtaccaaagaatgcagatgtgctgttttcctcatttcagaaaccgaaacag
aaacgacacaggtgtcgaaaccctaataaattggatataaacactttgacaggagaagaa
agggtgcctgttgtcaataaacgaaatgggaagaagatgggtggagctatggcgcctccg
atgaaggatctaccccggtggctggaagaaaaccccgagtttgcagttgccccagactgg
accgatatagtcaagcagtctggtttcgttcctgagtcgatgtttgaccgtcttctcacc
ggacccgtggtgcggggagaaggggcgagccggcggggacggaggcccaaaagtgaaatc
gcccgcgccgccgccgccgccgccgccgccgccgtggcctccacgtcgggcatcaacccc
ctgctggtgaacagcctgttcgctgggatggacctgacgagcctgcagagcctccagaac
ctccagtctctgcagctggccggcctcatgggcttccctccgggactggccacggccaca
gccgctgccgccgccgccggaggcgacaccaagaacccggccgccgtgctgcccctggtg
ctgccgggcgtggccggcctgcccagcatgttcgggctgggcgggctgctcaacaccccg
ctgtccgccgccgccgccgcagctgcagccgccgccgccggcaacaccgcggccgcggcc
ggccccgcggagccggaagatggcgcgtgcaaagcggaggagaagggcaacgagaacgag
gacgagaacaaggactcggagaaaagcacagacgccgttccgggcccggactctgcgaat
ggatctgttggtgctgctactgccccggccggcctgccctccaacccgctcgccttcaac
cccttcctcctgtccaccatggccccgggcctcttctacccgtccatgtttctacctccg
ggactggggggattgacgctgccgggcttccccgccttggcgggactgcagaacgccgtg
ggctccggcgacgacaaggctcccgacaaggccgaggggggcgcctttcaggaagaggag
accctcgagggcagcgacgccgaggagagcctggacaagacggcggagtcctcagtctta
gaagacgagatagcacagggcgaagagctagactcactcgacgggggggacgaaatagaa
aacaatgaaaatgatggataa
DBGET
integrated database retrieval system
