Phocoena sinus (vaquita): 116742170
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Entry
116742170 CDS
T07759
Symbol
RB1CC1
Name
(RefSeq) RB1-inducible coiled-coil protein 1 isoform X1
KO
K17589
RB1-inducible coiled-coil protein 1
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu04140
Autophagy - animal
psiu04211
Longevity regulating pathway
psiu05010
Alzheimer disease
psiu05014
Amyotrophic lateral sclerosis
psiu05016
Huntington disease
psiu05017
Spinocerebellar ataxia
psiu05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
116742170 (RB1CC1)
09150 Organismal Systems
09149 Aging
04211 Longevity regulating pathway
116742170 (RB1CC1)
09160 Human Diseases
09164 Neurodegenerative disease
05010 Alzheimer disease
116742170 (RB1CC1)
05014 Amyotrophic lateral sclerosis
116742170 (RB1CC1)
05016 Huntington disease
116742170 (RB1CC1)
05017 Spinocerebellar ataxia
116742170 (RB1CC1)
05022 Pathways of neurodegeneration - multiple diseases
116742170 (RB1CC1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
psiu01009
]
116742170 (RB1CC1)
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
psiu04131
]
116742170 (RB1CC1)
03029 Mitochondrial biogenesis [BR:
psiu03029
]
116742170 (RB1CC1)
Protein phosphatases and associated proteins [BR:
psiu01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
116742170 (RB1CC1)
Membrane trafficking [BR:
psiu04131
]
Autophagy
Autophagosome formation proteins
ULK complex
116742170 (RB1CC1)
Mitochondrial biogenesis [BR:
psiu03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
116742170 (RB1CC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG11
ATG17_like
TBK1_ULD
ubiquitin
Motif
Other DBs
NCBI-GeneID:
116742170
NCBI-ProteinID:
XP_032465324
Ensembl:
ENSPSNG00000020100
LinkDB
All DBs
Position
17:complement(2793561..2853874)
Genome browser
AA seq
1658 aa
AA seq
DB search
MKLYVFLVNTGTTLTFDTELTVQTVADLKHAIHSKYKIAIQHQVLVVNGGECMAADRRVC
TYSAGTDTNPIFLFNKEMILSERLPAIPKTTFSTENDMEIKVEESLMMPAVFHTVASRTQ
LAVEMYEVAKKLCSFCEGLVHDEHLQHQGWAAIMANLEDCSNSYQKLLFKFESIYSNYLQ
SVEDIKLKLTHLGTAVSVMAKIPLLECLTRHSYRECLGRLDSLPECEGSEKADMKTSTEL
VLSPDMPATMNKPSLTSFHKSVQHVAPDTTDAESGKEMREPCPSPVQQDEAAVDAKDSDL
PFFNVSLLDWINVQDRPNDVESLVRKCFDSMSRLDPRIIRPFIAECRQTIANLDNQNMKA
IKGLEDRLYALDQMIASCGRLVNEQKELAQGFLANQMRAENLKDASVLPDLCLSHANQLM
IMLQNHRKLLDIKQKCTTAKQELANNLHVRLKWCCFVMLHADQDGEKLQALLRLVIELLE
RVKTVEALSTVPQVYCLAAVEVVRRRMFVKHYREWTGALVKDGKRLYEAEKSKRESFGKL
FRKSFLRNRLFRGLDSWPPSFCTQKPRKFDCELPDISLKDLQFLQSFCPSEVQPFLRVPL
LCDFDPLHQHVLALHNLVKAAQSLDEMSQTITDLLSEQKASASQTSPQAASSPRIESTTG
ITTTTSPRTPPPLTVQGPLCPAVCPLEELSPDSIDAHTFDFETIPHPNIEQTLHQASLDL
DSLAESPESDFMSAVNEFVIEENLSSPNPISDPQSPEMMVESLYSSVINAIDSRRMQDTS
ARGQEQSGHHASLGVQLEKCRVTAHDSHLSVQTIKEDLCHFRTFVQKEQCDFSNSLKCTA
VEIKNIIEKVKCSLEITLNERHQKELQSLKSEYEGKLAALVKESEENENKITKLKGDLVC
LEEVLQNKDNEFAMVKHEKEAVICLQKEKDQKLLEMESVMRTQHCEMEELKQSRETVLAD
LKRLREENDEKLQLLRAELQCLEQSHLKDLEDTLQARHTQELKKVMTGHEVCLEKLEKEN
QQRIEQMQDSHATAIQEKEQQLQELKLKVSDLSDMRCKLEVELALKEAETDEIKILLEES
RAQQKETLKSLVEQETEHLRTEIGKLNQKIQDDNENYQVGLAELRTLMTIEKDQCISELI
SRQEEESDMLRAEVNKVTSLHHHASEVEKGLKEELAELQSKLDSELSALEKEKDEKITRQ
EEKYRAIIQNLEKDKEECVMWHQRDREQLIQRLNCEKEAAVETARKEMSLEREAVEKELL
EKIKHLESQIAKSHTIESTKQDSSSLVAELQEKLQEEKAKFLEQLEEQEKRKNEEMQNVR
TSLIAEQQTNFNTVLTREKMRKENIISDLSDKLKSTMQQQERDKDLIESLSEDRARLLEE
KKRLEEEVSRLRGGGPVPFPGVAAAPELYGACAPEPPAEAPDALGEGRPDSALETSTMSV
RENAHTLSEERRRIMLLERTLQLKEEENKRLNQRLMSQSMSSVSPRHSEKIAIRDFQVGD
LVLIILDERHDNYVLFTVSPTLYFLHSESLPALDLKPGEGASGVSRRPWVLGKVMEKEYC
QAKKCSFITPKTAGHLFIYKSTRQHTSFVYIIYFLPGYILGTINSSKPLAELKWFCFCFS
TQVTLEMRTKLVHFLKGHTPCTVVYDQPYSLPVTYTLA
NT seq
4977 nt
NT seq
+upstream
nt +downstream
nt
atgaagttgtatgtatttctggtgaacactggaaccaccctgacatttgacactgaactt
acagtgcaaactgtggctgacctgaagcatgccatccacagcaagtacaagatcgctatt
cagcaccaggtgttggtggtcaacgggggagagtgcatggctgcagaccggagagtgtgc
acctacagtgccgggacggacacaaatccaatttttctttttaacaaggaaatgatctta
tctgaacgtctacctgctattcctaaaactaccttttcaacagaaaatgacatggaaata
aaagttgaagagtcccttatgatgcctgcagtttttcacactgttgcttcaaggacacaa
cttgcagtggaaatgtatgaagttgccaagaaactttgctctttctgtgaaggtctggtc
catgatgaacatcttcaacaccaaggctgggctgcaatcatggccaatctggaggattgt
tcaaattcctaccaaaagctacttttcaaatttgaaagtatttattcgaattatctgcaa
tccgtagaggacatcaagttaaaacttactcatttaggaactgcggtttcagtcatggcc
aagattccactgttggagtgcctaaccagacatagttacagggaatgtttgggaagactg
gattccttgcctgaatgtgaaggctcagaaaaggccgatatgaaaacctccactgaactg
gtgctctctcccgatatgcctgcaacaatgaacaaaccctccttgacctcatttcacaag
tccgtgcagcatgtagccccagacaccacagatgctgaaagtggaaaagaaatgagggaa
ccttgtccaagtcctgtccagcaggacgaagctgcagtagatgctaaagacagtgacctg
cctttttttaatgtttctttgttagactggatcaatgtgcaggataggcctaatgatgtg
gaatcgctggtcaggaagtgctttgattccatgagcaggcttgatccacggatcattcgg
ccctttatagcagaatgccgtcagactattgccaatctggataatcagaacatgaaggcc
atcaaggggctggaggaccggctgtacgccctggaccagatgatcgccagctgcggccga
ctcgtcaacgagcagaaagaactcgctcagggatttttagctaatcagatgagagctgaa
aacttgaaagatgcgtctgtgttacctgatttgtgcctgagtcatgcaaatcagttgatg
attatgttgcaaaatcatagaaaactgttggatattaaacagaagtgcaccactgccaaa
caagaactagcaaataaccttcatgtcagactgaagtggtgttgctttgtgatgcttcat
gctgatcaggatggagagaagttgcaggctttgctccgcctcgtgatagagctcctagag
agagtcaagaccgtcgaagctctgagtacagtccctcaggtgtactgcttagctgctgtt
gaggttgtcaggagaagaatgttcgtaaaacactacagggagtggactggtgctttagtc
aaagacggaaagcgattatatgaggctgaaaagtcaaaaagggaatcctttgggaagtta
tttaggaagtcctttttaagaaatcgtctgtttaggggattggactcctggcccccatcc
ttttgtacacagaagcctcgaaagtttgactgtgaacttccagatatttcattaaaagat
ttacagtttctgcaatcattttgtccttccgaagtccagccgttcctcagggtgccctta
ctttgtgactttgaccctctacaccagcatgtacttgctctacataatttggtaaaagca
gcacaaagtttggatgaaatgtcacagaccattacagacctactgagtgaacaaaaggca
tccgcgagtcagacgtccccacaggcggcttcctcaccccggatagaaagcacgacagga
atcacaactactacctcacccagaacaccccctccactcactgtgcagggccccttgtgt
cctgcagtctgtcccttagaagaattgtctccggatagcattgatgcacatacatttgat
tttgaaactatcccccatccaaacatagaacagactcttcaccaggcttcgttagacttg
gattcgttagcagaaagtcctgaatcagatttcatgtctgcagtgaatgagtttgtaata
gaggaaaacttgtcatctcccaatcctatcagtgatccacagagtccagagatgatggtg
gaatccctttactcctcagtcatcaatgccatcgacagcaggcgaatgcaggacacgagt
gcccgaggtcaggagcaatcgggccaccacgcgtctctcggcgtccagctggagaagtgc
cgtgtcactgcccacgactcgcacctcagtgtacaaaccataaaggaggacctttgccac
ttccgaacgtttgtgcagaaggaacagtgtgacttctcaaattctttaaagtgtacagca
gtagaaataaaaaacattattgaaaaagtaaaatgctctttggaaataacactaaatgaa
agacaccaaaaagaactacagtctttaaaaagtgaatatgagggcaaacttgctgcacta
gtaaaggagagtgaagaaaatgaaaacaaaatcacaaagctgaaaggagacttggtgtgc
cttgaggaggttttacaaaataaagataacgaatttgctatggttaaacatgagaaggaa
gctgtcatctgcctgcagaaggaaaaggatcagaagttgttagagatggaaagtgtaatg
cgtacgcaacactgcgagatggaagaactgaagcagtcacgggagaccgtgctagcagac
ttaaagaggctccgcgaggagaacgatgagaagctccagctgttgagggcggagctccag
tgcctggagcagagccacctgaaggacttagaggacactctgcaagccaggcacactcag
gagctcaagaaggtcatgaccggccacgaggtctgtttggagaaattagaaaaggaaaat
caacagagaatcgagcagatgcaagattctcatgccacagccatccaggaaaaagaacag
cagctccaggaattaaaactcaaggtttctgatttgtcggacatgagatgtaagttagag
gttgaacttgccctgaaggaagcagaaacggatgaaataaaaattttgctggaagaaagc
agagcccagcagaaggagaccttaaaatctctcgtcgaacaagagacagaacatttgaga
acagagataggtaaactaaaccaaaagattcaagatgataatgaaaattatcaggtgggc
ttggccgaactaagaacgttaatgacaattgaaaaagatcagtgcatttcagagttaatt
agtagacaggaagaagaatctgatatgcttagggccgaggtaaacaaagtgacatcattg
catcaccacgcatctgaagtagaaaaaggcctgaaagaagaattggctgaactgcagagt
aaactggactcagaactgagtgctcttgagaaagaaaaagatgagaaaatcacccggcaa
gaagagaagtacagggctattatccagaaccttgaaaaagacaaagaggaatgtgtcatg
tggcaccaacgggaccgagaacagctgattcagaggcttaattgtgaaaaagaggcagct
gttgagactgcccgtaaagaaatgagcttggaaagggaagctgttgagaaggagttgtta
gaaaaaattaaacatcttgagagtcaaatagcaaaaagtcataccattgaatctaccaaa
caagattcttcaagcctagtcgctgaacttcaagaaaagctccaggaagaaaaagctaag
tttctagaacaacttgaagagcaggagaaaagaaaaaacgaagaaatgcagaatgtgcga
acatctttgattgctgaacaacagaccaattttaatactgttttaacaagagagaaaatg
agaaaagagaacataatcagtgatctcagtgacaagctgaaaagcacgatgcagcagcaa
gagcgggacaaagatttgatcgagtctctgtccgaggaccgcgcgcgcttgctggaggag
aagaagaggctggaggaggaggtcagccggctgcggggcggcggccctgtccccttcccg
ggggtggccgctgcccccgagctgtatggggcctgtgcgcccgagcccccggcggaggcc
ccggatgccctcggcgaaggcaggccggactcagcgctggagaccagcacgatgtctgtc
cgagaaaacgcccacacgctctctgaagagaggcggaggataatgctgttggaacgcaca
ctacagttgaaagaagaagaaaacaagcggttgaatcagagactgatgtctcagagcatg
tcgtccgtgtccccaaggcattcggaaaagatagctattagagattttcaggtgggagat
ctggtcctcatcatcctggacgagcgccatgacaattacgtgctcttcaccgtgagtccc
accttgtacttcctgcactcagagtcgctgcctgccctggacctcaaaccaggtgagggg
gcttcaggtgtatctcgaagaccatgggtccttgggaaagtgatggagaaggagtactgt
caggccaaaaagtgctcattcatcactccaaaaacagcaggccatctttttatatacaag
tcaacacgacagcatacttctttcgtgtatatcatttactttctacctggctacatttta
ggaacaataaattcatcaaaacccttggctgagttaaaatggttttgtttttgtttttct
acccaagtaactctagaaatgcggaccaaactagttcactttctcaaagggcacaccccg
tgcactgtggtttatgatcagccatattctttgcctgttacatataccttagcttga
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integrated database retrieval system
