Phocoena sinus (vaquita): 116742283
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Entry
116742283 CDS
T07759
Symbol
DCAF13
Name
(RefSeq) DDB1- and CUL4-associated factor 13 isoform X1
KO
K11806
DDB1- and CUL4-associated factor 13
Organism
psiu
Phocoena sinus (vaquita)
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
psiu03009
]
116742283 (DCAF13)
04121 Ubiquitin system [BR:
psiu04121
]
116742283 (DCAF13)
Ribosome biogenesis [BR:
psiu03009
]
Eukaryotic type
90S particles
Other 90S particles
116742283 (DCAF13)
Ubiquitin system [BR:
psiu04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
116742283 (DCAF13)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sof1
WD40
WD40_Prp19
Beta-prop_EML_2
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
WDR55
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_EML
Beta-prop_EIPR1
WD40_MABP1-WDR62_2nd
Beta-prop_WDR75_1st
Beta-prop_RIG_2nd
WD40_RFWD3
Beta-prop_WDR90_POC16_2nd
Beta-prop_IFT122_1st
eIF2A
ANAPC4_WD40
MIOS_WD40
Beta-prop_IFT140_1st
Beta-prop_NUP159_NUP214
KNTC1_N
Beta-prop_WDR19_1st
Beta-prop_WDR35_TULP_N
Motif
Other DBs
NCBI-GeneID:
116742283
NCBI-ProteinID:
XP_032465497
Ensembl:
ENSPSNG00000020283
UniProt:
A0A8C9E8T8
LinkDB
All DBs
Position
17:46812385..46898486
Genome browser
AA seq
445 aa
AA seq
DB search
MKVKMLSRNPDSYVRETKLDLQRVPRNYDPTLHPFEVPREYVRALNATKLERVFAKPFLA
SLDGHRDGVSCLAKHPKSLATVLSGACDGEVRIWNLTKRKCIRMIQAHEGFVRGICTHFC
GTSFFTVGDDKTVKQWKMDGPSYGEEEEPLHTILGKTVYTGIDHHWKEAVFATCGQQVDI
WDEQRTSPICSMTWGFDSISSVKFNPIETFLLGSCASDRNIVLYDMRQATPLKKVILDMR
TNTICWNPMEAFIFTAANEDYNLYTFDMRALDTPVMIHMDHVSAVLDVDYSPTGKDFVSA
SFDKSIRIFPVDKSRSREVYHTKRMQHVICVKWTSDSKYIMCGSDEMNIRLWKANASEKL
GVLTSREKAATDYNQRLKEKFQHHPHIKRISRHRHLPKSIYSQIQEQRIMKEARRRKELN
RIKHSKPGSVQRVSEKKKRVVAVVK
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atgaaggtgaagatgttgagccggaacccggacagctatgtccgcgaaaccaaactggac
ttacagagagttccaagaaactatgatcctaccttacatccttttgaggtcccacgagaa
tatgtaagagctttaaatgccaccaaactggaacgggtttttgcgaaaccgttccttgct
tccctggatggtcaccgagacggagtcagttgcttggctaaacatccgaagagtctggct
actgtcctttctggggcatgtgatggagaggttagaatttggaacttaactaaacgaaaa
tgtattcgtatgatacaagcacatgaaggttttgtacgaggaatatgtactcacttttgt
gggacttccttttttactgttggtgatgacaaaactgtgaagcagtggaaaatggatgga
ccaagctatggagaagaggaggaaccattgcatacaatattaggaaagacagtgtataca
ggaattgatcatcactggaaagaagctgtttttgccacatgtggacagcaagtagacatt
tgggatgaacaaagaaccagtcctatatgttcaatgacttggggatttgacagtataagc
agtgttaaatttaacccaattgagacatttctcttgggaagttgtgcttctgacaggaat
atagtactatatgatatgaggcaagctactcctctgaaaaaggtcatcttagatatgaga
acaaatacaatttgctggaaccctatggaagctttcatttttactgcagcaaacgaagat
tacaacttatatacttttgatatgcgtgcactggacactcctgtaatgatacatatggat
catgtgtctgcggtgcttgatgtggattactctcctactgggaaagactttgtgtctgct
agttttgataaatctattcgaatctttcctgtggacaaaagtagaagcagggaagtctat
cacacaaagagaatgcaacatgttatctgtgtaaaatggacttctgacagcaagtacatt
atgtgtggatctgatgaaatgaacattcgtctatggaaagctaatgcttctgaaaagttg
ggtgtgcttacatcacgagaaaaagcagccacagattataaccagagattaaaggagaaa
tttcaacatcatcctcacataaaacgtatttctcgtcaccgacatctaccaaaatctatc
tacagtcagattcaggagcagcgcatcatgaaagaagctcgtcgacgaaaggaactgaat
cgtatcaaacatagcaagcctggatctgtgcagagggtgtcagagaagaagaaacgcgta
gtggcagttgtgaaataa
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