Phocoena sinus (vaquita): 116742404
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Entry
116742404 CDS
T07759
Symbol
SCRIB
Name
(RefSeq) protein scribble homolog isoform X1
KO
K16175
protein scribble
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu04390
Hippo signaling pathway
psiu04530
Tight junction
psiu05165
Human papillomavirus infection
psiu05203
Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04390 Hippo signaling pathway
116742404 (SCRIB)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
116742404 (SCRIB)
09160 Human Diseases
09161 Cancer: overview
05203 Viral carcinogenesis
116742404 (SCRIB)
09172 Infectious disease: viral
05165 Human papillomavirus infection
116742404 (SCRIB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
LRR_8
LRR_14
LRR_4
PDZ_2
LRR_13
LRR_9
LRR_LRWD1
Pept_S41_N_bact
Motif
Other DBs
NCBI-GeneID:
116742404
NCBI-ProteinID:
XP_032465904
Ensembl:
ENSPSNG00000019007
LinkDB
All DBs
Position
17:complement(78649121..78670862)
Genome browser
AA seq
1895 aa
AA seq
DB search
MLKCIPLWRCNRHVESVDKRHCSLQAVPEEIYRYSRSLEELLLDANQLRELPKPFFRLLN
LRKLGLSDNEIQRLPPEVANFMQLVELDVSRNDIPEIPESIKFCKALEIADFSGNPLSRL
PEGFTQLRSLAHLALNDVSLQALPGDVGNLANLVTLELRENLLKSLPASLSFLVKLEQLD
LGGNDLEVLPDTLGALPNLRELWLDRNQLSALPPELGNLRRLVCLDVSENRLEELPAELG
GLVLLTDLLLSQNWLQRLPDGIGQLKQLSILKVDQNRLCEVTEAIGDCENLSELILTENL
LTALPRSLGKLSKLTNLNVDRNRLEALPPEIGGCMALSVLSLRDNRLAVLPPELAHTAEL
HVLDVAGNRLQSLPFALTHLNLKALWLAENQAQPMLRFQTEDDAQTGEKVLTCYLLPQQP
PLSLEDPGPRSSPSESWGDAPLGRVSVIQFLEAPAGDEDAEEAAAEKRGLQRRATPHPSE
LKVMKRGVERRSEATSCRPDCTQHSPSPPPSEEEKRLSAESGLSADSHLSASTASQGEPE
GLLAEEEEPSQQESTPTSQEEVTEETYEEPTVRFAEDTLLLPREDGESEAGQLEAPWPVP
GERQRLIRKDTPHYKKHFKISKLPQPEAVVALLQGTQPDSEGPVGSGGWHNGPHVPWAPR
AEEEEEEEEEEEAEEAAAAAAAAGAKEAGEEEESEGAVASAPSVKGVSFDQANNLLIEPA
RIEEEELTLTIVRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAAQAGVRVGDKL
LEVNGVALQDAEHQQAVEALRGAGTTVHVRLWRERMVEPENAVTVTPLRPEDDYSPRERW
GGGLRPRPRQPEPPGPLRQRRVACLVRSDKGLGFSIAGGKGSTPYRAGDPGIFISRIAEG
GAAHRAGTLQVGDRVLSIDGVDVTEARHDHAVSLLTAASPTIALLLEREAGGPLAPGTPP
HSPPPPAATTTTMATANPGEPGPLRLAPSLLAAALEGPYPVEEICLPRAGGPLGLSIVGG
SDHSSHPFGVQEPGVFISKVLPRGLAARSGLRVGDRILGVNGQDVRDATHQEAVSALLRP
CLELVLLVRRDPPPPGMRELCIQKAPGEKLGISIRGGAKGHAGNPCDPTDEGIFISKVSP
TGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLRSVGDTLTVLVCDGFDASAPEVSP
GIIANPFAAGIGRRNSLESISSIDRELSPEGPSKEKELPGQTPQWGPEAVGRSLESLKLD
CRALAATPSTGSVQRVPSGASGGKMTEAPCSPGHQQVSAHGGGGWRTLGGCYLQSPLLWE
GGCQGTAPPPSCHPSLLRTQPVGPFLAELGGMGLGSSCGFLGQMGCGWSGRPHPHPSSRL
GAPGGQLGPAPTPTCLQRLPGSAAWGGPGRGHPPLAWWQGRGRHWKCQLGAQLPASAPSQ
HGRWVSVGLTPWTPTQPPTWAPSLFFPRPPPHPHIPSPEPIPPGPCTCPLQTKPGVIQPV
AQAWPRGSPALRGRGDPQSPPSPPSPDELPANVKQAYRTFAAVPGLHPPLEAPAQPPTPG
PTASPEQLSFRERQKYFELEVRVPQTGGPPKRVSLVGADDLRKMQEEEARKLQQKRTQML
REAAGDAVDAGRPEGEAPEDEEPEEEPPWAGRGPAAGLGPASPPPQGGGAPVRTAKAERR
HQERLRVQSPELPAPERTLSPAERRALEAEKRALWRAARMKSLEQDALRAQMVLSKSQEG
RSKRGPLERLAEAPSPAPTPSPTPLEDLGLQTGTSPGRLALSGRKFDYRVFAALPSSRPV
YDMQSPDFAEELRSLEPSPSPGELAGAAPGAPRVPGARQLTPCPRRPGLPEEDGEVAVVL
LGRPSPGTAGPEEVALCSSRRAMRPGRRGLGPVPS
NT seq
5688 nt
NT seq
+upstream
nt +downstream
nt
atgctcaagtgcatcccgctgtggcgctgcaaccggcacgtggagtcggtggacaagcgg
cactgctcactgcaggccgtgcccgaggagatctaccgctacagccgcagcctggaggag
ctgctcctcgacgccaaccagctgcgtgagctgcccaagcccttctttcggctgctgaac
ctgcgcaagctgggcctgagtgacaacgagatccagcggttgccccctgaggtggccaac
ttcatgcaactggtggagctggacgtgtctcggaatgacatccctgagatccccgagagc
atcaagttttgcaaagccctggagattgcagatttcagtgggaatcctttgtccaggctc
cccgaaggtttcactcagctgcgcagcctggctcatctggccctgaatgatgtgtctttg
caggcgctgcctggggatgtgggcaatctcgccaacctggtgaccttggagctccgggag
aatctgctcaagtccttgcctgcgtccttgtctttcctggtcaagctggaacagctggat
ctgggaggcaacgatctggaagtgctgccagacaccctgggggccctgcccaacttgcgt
gagctgtggctggaccggaaccagctgtcggccctgcccccggaactcgggaatctgcgg
cgcctggtgtgcctggatgtgtcggagaaccggctggaggagctgcctgcggagctcggg
gggctggtgctgctcaccgacctgctgctttcgcagaactggctgcagcggcttcctgac
ggcattggtcagctgaagcagctgtccatcttgaaggttgaccagaatcgcctctgcgag
gtgacggaggccattggggactgtgagaacttgtcagagctgatcctcactgagaacctg
ctgacggccctgccccgctccttggggaagctgagcaagctgaccaacctcaacgtggac
cggaaccgcctggaggcactgccgcctgagatcgggggctgcatggcactcagcgttctc
tctctgagggacaaccgcctggcggtcctgccgccggagctcgcccacacggccgagctg
catgtgctggacgtggccgggaaccgtctgcagagtctgccgttcgcactcacgcacctc
aacctaaaggccctgtggctggcggagaaccaggcgcagcccatgcttcggttccagact
gaggacgacgcccagaccggcgagaaggtgctcacctgctacctgctgccccagcagccc
ccgctcagcctcgaggacccggggccgaggagcagcccttcggagagctggggtgatgcc
ccgctcggccgcgtcagtgtcatccagttcctagaggcccccgcgggcgacgaggacgca
gaggaggctgctgccgagaaacggggcctgcagcgtcgggctacgcctcaccccagcgag
ctcaaggtgatgaagaggggtgtagagcgtcgaagcgaagccacctcctgcaggcccgac
tgcacgcagcactcaccctcacccccgccctcggaggaggagaagaggctgagcgccgag
tctggcctgagtgcggactcgcacctgtctgccagcacagcctcccaaggtgagcccgag
ggcctgctggccgaggaggaggagccgagccagcaggaatccacgccaacctcccaggag
gaggtcacagaggagacctatgaggagcccacggtgcgcttcgcggaggacacgctgctc
ctgcccagggaggatggcgagagcgaggcggggcagctggaggccccctggcccgtgccg
ggtgagaggcagcggctcatccgcaaggacacgccccactacaagaagcacttcaagatc
tccaagctgccccagcccgaggccgtggtggcgctgcttcaggggacacagccagacagt
gagggcccagtagggtccgggggctggcacaacggcccccacgtgccctgggctcctcga
gccgaggaggaggaggaggaggaggaagaggaggaagccgaggaggcggcggcggcagcg
gcggcggcgggagccaaggaggcgggcgaggaggaggagagcgagggggctgtggcttct
gcgccctctgtcaagggggtgtcgtttgaccaggccaataacctgctgatagagcccgct
cgcattgaggaggaagagctgacgctcaccatcgtgcggcagacggggggcctgggcatc
agcatcgcgggcggcaagggctccacgccctacaagggtgacgacgagggtatattcatc
tcccgggtatctgaggagggccctgcggctcaggctggggtccgagtaggcgacaagctc
ctcgaggtgaacggcgtggccttgcaggacgccgagcatcaacaggccgtggaggcgctg
cgtggcgcgggcaccaccgtgcacgtgcggctgtggcgggagcgtatggtggagcccgag
aacgcggtcaccgtcacgcctctgaggcctgaggacgactacagcccccgggagcggtgg
ggaggcggtctgcgcccgcgcccgcgccagcccgagccgccagggcccctccgccagcgt
cgcgtggcctgcctcgtgcgcagcgacaagggcttgggcttcagcatcgctggggggaaa
ggctccacaccctaccgggctggagacccgggtatcttcatctcccgcattgctgagggg
ggcgccgcccaccgggcgggcaccctacaggtcggcgatcgcgtcctctccatcgacggg
gtggatgtgacggaggccaggcacgaccacgccgtctccctgctgaccgctgcctctccc
accatcgccctgctgctggaacgggaggccggggggccgcttgcccctggtactccgcca
cactcacccccaccccctgctgctaccaccaccaccatggccactgccaaccctggggag
cccggaccgctaaggctggcccccagtctgctggccgctgccctggaggggccgtaccca
gtggaggagatctgtctgccgagagctgggggccccttggggctcagcatcgtcgggggc
tccgaccactccagccacccatttggcgtccaggagcccggcgtgttcatctctaaggtg
ctcccccggggcctggctgcacgcagtggcctgcgggttggggaccgcatcctgggagtg
aatgggcaggatgtgcgggacgccacccaccaggaagcggtcagcgccctgctgcggccc
tgcctcgagctggtcctgctcgtgcggagggacccgccgcccccgggcatgcgggagctc
tgtatccagaaggcccctggggagaagctgggcatcagcatccggggcggcgccaagggc
cacgcagggaacccctgtgaccccacggacgagggcatcttcatctccaaggtgagcccc
acaggagcggccgggcgagatggtcgcctgcgggtggggctgcggctgctggaggtgaac
cagcagagcttgctgggcttgacgcacggcgaagccgtgcagctgctacgcagcgtgggc
gacaccctgactgtgcttgtctgtgacggcttcgacgccagcgcccccgaggtgtcccca
ggcatcatcgccaacccctttgcagcaggcattggtcgccggaacagcctggagagcatc
tcctccatcgaccgggagctgagccccgagggccccagcaaggagaaggagctgcctgga
cagaccccacagtgggggccagaggccgtgggtcggagcctggagagcctgaagctggac
tgccgcgccctggccgccacacccagcaccggcagtgtgcagagggtaccgtctggggca
agtggcgggaagatgactgaggccccctgttcccctggccaccagcaggtgagtgcacac
gggggtggggggtggaggactctgggggggtgctatctgcagagccccctcctctgggaa
gggggttgccaggggacagcgcctccccccagctgccatccgtcactcttgaggacacaa
cctgtgggccccttcctggcagagctgggtggcatggggctggggagctcctgtggcttc
cttgggcagatgggctgtgggtggtcagggcggccccacccccatccatcctcccgtctg
ggagcccctgggggccagcttggccctgcccccacccccacctgcttgcagaggctcccc
ggttctgctgcgtggggagggccaggccgtgggcacccccctctcgcctggtggcagggt
aggggtaggcactggaagtgtcagcttggagcccagctcccagcctctgccccttcccaa
cacggcagatgggtgagtgttggcctcacaccctggacacccacccagccgcccacctgg
gctccgtctctcttttttccccgtcctcccccccatcctcacatcccctcacctgaaccg
attcctcctggcccctgcacctgccctttgcagacaaagcctggggtgatccagccagtg
gctcaggcctggccaaggggctccccggccctcaggggcagaggtgatccccaatccccc
ccctccccgccctcccctgacgagctgcccgccaacgtgaagcaggcgtataggaccttc
gccgccgtgcccggcctgcacccgcccctggaggcccctgcccagcctcccacgcctggg
cccacggcctccccggagcagctgtccttccgcgagcggcagaagtacttcgagctggag
gtgcgggtgccccagaccgggggcccccctaagcgcgtgtcgctggtgggcgccgacgac
ctgcggaagatgcaggaggaggaagcccgaaagctgcaacagaagaggacgcagatgctg
cgcgaggcggcgggggacgcggtggacgcggggcgcccggaaggcgaggccccggaggac
gaggagcccgaggaggagccgccctgggccggccggggccccgccgcagggcttggcccc
gcgtcccccccgccgcagggaggcggcgctccggtgcggacggccaaggccgagcggcgc
caccaggagcggctgcgcgtgcagagcccggagctgccggctcctgagcggaccctgtcc
ccggcggagcgccgcgccctggaggccgagaagcgcgcgctgtggagggcggccaggatg
aagtctctggaacaggacgctctccgcgcacagatggtcctcagcaagtctcaggagggt
cgaagcaagcgggggcctctggagcgcctggccgaggccccctcgcccgcgcccaccccg
tcacccacccccttggaagacctcggcctccagaccggcacctccccgggacgcttggcc
ttgtctgggaggaagtttgactacagggtgtttgcagccctcccctcttccagacctgtc
tatgacatgcagtccccagattttgctgaggagctgaggtccttggaaccatctccgagc
cctggtgagttggcaggcgcggccccgggtgctcccagggtgcctggggcccgtcagctc
accccctgcccccgccggccaggtctgccagaggaggatggagaggtggccgtggtgctt
ctgggcaggccttcgccgggcaccgcgggccccgaggaggtggccctgtgcagcagccgc
cgcgccatgcggccggggcgccggggcctgggcccggtgccctcctag
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