Phocoena sinus (vaquita): 116742459
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Entry
116742459 CDS
T07759
Symbol
LRP12
Name
(RefSeq) low-density lipoprotein receptor-related protein 12 isoform X1
KO
K20050
low-density lipoprotein receptor-related protein 3/10/12
Organism
psiu
Phocoena sinus (vaquita)
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
psiu04131
]
116742459 (LRP12)
Membrane trafficking [BR:
psiu04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
116742459 (LRP12)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CUB
Ldl_recept_a
Motif
Other DBs
NCBI-GeneID:
116742459
NCBI-ProteinID:
XP_032466009
Ensembl:
ENSPSNG00000021535
UniProt:
A0A8C9EBZ4
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Position
17:complement(47717352..47802583)
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AA seq
859 aa
AA seq
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MARRWSTKESPRWRSALVLLFFAGVYGNGALAEHSENVHISGVSTACGETPEQIQVPSGI
ITSPGWPSEYPAKINCSWFIRANPGEIITISFQDFDIQGSRRCSLDWLTIETYKNIESYR
ACGSTIPPPYISSQDHVWIRFHSDDSISRKGFRLAYFSGKSEEPNCACDQFRCGNGKCIP
AAWKCNNMDECGDSSDEEICAKEVNPPTSASFQPCAYNQFQCLSRFTKVYTCLPESLKCD
GNIDCLDLGDEIDCDVPTCGQWLKYFYGTFNSPNYPDFYPPGSNCTWLIDTGDHRKVILR
FTDFKLDGTGYGDYVKIYDGLEENPHKLLRVLTAFDSHAPLTVVSSSGQIRVHFCADKVN
AARGFNATYQVDGFCLPWEIPCGGNWGCYTEQQRCDGYWHCPNGRDEINCTMCQKEEFPC
SRNGVCYPRSDRCNYQNHCPNGSDEKNCFFCQPGNFHCKNNRCVFESWVCDSQDDCGDGS
DEENCPVIVPTRVITAAVIGSLICGLLLVIALGCTCKLYSLRMFERRSFETQLSRVEAEL
LRREAPPSYGQLIAQGLIPPVEDFPVCPPNQASVLENLRLAVRSQLGFTSIRLPMAGRSS
NIWNRIFNFARLRHSGSLALVSADGDAVAPSQSTSREPERNHTHRSLFSVESDDTDTENE
RRDTVGASGGVAAPLPQKVPPTTAVEATVGASGSSSTQNTRGGHTETGRDVTSAEPPSVS
PARHQLTSALSRMTQGLRWVRFTLGRSSSVSQNQSPLRQLDNGVNGREEDDDVEMLIPVS
EGASDFDVNDCSRPLLDLASDQGQRFRRPYSAADPGVRLSNRDGPCERCGVVHTAQIPDS
CLEATLKNETSDDEALLLC
NT seq
2580 nt
NT seq
+upstream
nt +downstream
nt
atggcccgtcgctggagcacaaaagagtctccgcggtggaggtctgcgctggtcttgctt
ttcttcgccggggtgtacggaaatggtgctcttgcagaacattctgaaaatgtgcatatt
tcaggagtgtcaactgcttgtggagaaactccagaacaaattcaagtaccaagtggtata
atcacgagcccaggctggccttctgaatatcctgccaaaatcaactgtagctggttcata
agggcaaacccaggggaaattattactataagttttcaggattttgatattcaggggtcc
agaagatgcagtttggactggttgacgatagaaacatacaagaatattgaaagctacaga
gcctgtggttctacaatcccaccaccatatatttcttcacaagaccacgtctggatcagg
ttccattccgatgacagtatctctaggaagggtttcagactggcatacttttcagggaaa
tctgaggaaccaaactgtgcttgtgaccagtttcgttgtggtaatggaaagtgtatacca
gcagcctggaaatgcaataacatggacgaatgtggagatagttctgatgaagagatctgt
gccaaagaagtgaatcctccaacatctgcctctttccaaccctgtgcttacaaccagttc
cagtgtctatctcggtttaccaaagtttacacttgcctccccgaatctttaaaatgtgat
gggaacattgactgccttgaccttggagatgagatagactgtgatgtgccaacctgtggg
cagtggttaaaatatttttatggtacttttaattctcccaattatccagacttttatcct
cccggaagcaattgcacctggctaatagacactggtgatcatcgtaaagtcatcttacgc
ttcactgactttaaacttgatggtactggttatggtgattatgtcaaaatatacgatgga
ttagaggagaatccacacaagcttttgcgtgtgttaactgcttttgattctcatgcgcct
ctcactgtcgtgtcttcttctggacagataagggtgcatttctgtgccgataaagtcaac
gctgccaggggatttaatgctacttaccaagtagatggcttctgtttgccatgggaaata
ccctgcggagggaactgggggtgttatacggagcagcagcgctgtgatgggtattggcat
tgcccaaacggaagggatgaaatcaattgtaccatgtgccaaaaggaagagttcccatgt
tcccggaacggcgtctgttaccctcgttctgatcgctgcaactaccagaatcattgccca
aatggctccgatgaaaaaaactgctttttttgccagccaggaaattttcattgcaaaaac
aatcgttgtgtgtttgaaagctgggtgtgtgactctcaggacgactgtggcgatggcagc
gatgaggagaattgcccggtaatcgtgcctacccgagtcataactgcagccgtcataggg
agccttatctgtggcctgttactggtcattgccttgggatgtacttgtaagctctattct
ctgagaatgtttgaacgaagatcatttgaaacacagttgtccagagtggaagcagaattg
ttaagaagagaagctcctccctcttatggacaactgattgctcagggtttaattccacca
gttgaagattttcctgtttgcccacctaaccaagcttctgttttggaaaacctgaggcta
gctgtacggtctcagctcggatttacttcaatcagacttcctatggcaggcagatccagc
aacatctggaatcgtatttttaattttgcaagattacgccattcagggtcattggctctg
gtctcagcagatggggatgcggttgcccctagtcagagtaccagcagagaacctgaaaga
aatcatactcacagaagtttattttctgtggaatctgacgacacagacacagaaaatgag
agaagagatacggtaggagcatctggcggggttgcagctcctttgcctcaaaaagtccct
cccacgacagctgtagaagcaacagtgggagcaagtggaagttcctccactcagaatacc
cgaggtggtcacacagagaccggacgggatgtgacaagcgcggaacccccaagtgtgagt
ccggcgcgtcaccagctcacgagtgcgctaagtcgtatgactcaggggctacgttgggta
cgttttacattagggcgatcaagctccgtaagtcagaaccagagccctttgagacaactt
gataatggggtaaatggaagagaagaagatgatgatgttgaaatgctaattccagtttct
gaaggagcttcagactttgatgtgaatgattgctccagacctcttcttgatcttgcctcc
gatcaagggcaaaggttcagacgaccatatagtgcagcagaccctggagtaagactaagt
aatcgcgatggcccctgtgagcgctgcggcgttgtccacactgcccagataccagactct
tgcttagaagcaacgctgaaaaatgaaacaagtgatgatgaagctttgttactttgttag
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