Phocoena sinus (vaquita): 116742478
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Entry
116742478 CDS
T07759
Symbol
TRIM55
Name
(RefSeq) tripartite motif-containing protein 55 isoform X1
KO
K10654
tripartite motif-containing protein 55
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
116742478 (TRIM55)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
psiu04121
]
116742478 (TRIM55)
Ubiquitin system [BR:
psiu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
116742478 (TRIM55)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_UBOX
zf-C3HC4
zf-C3HC4_2
RING_XB3-XBAT31
zf-B_box
zf-RING_5
zf-RING_2
zf-C3HC4_4
zf-C3HC4_3
zf-RING_6
DegS
Sina_RING
Cbl_N
UvrD_C
COS
DUF5667
Motif
Other DBs
NCBI-GeneID:
116742478
NCBI-ProteinID:
XP_032466039
Ensembl:
ENSPSNG00000016770
UniProt:
A0A8C9CD43
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All DBs
Position
17:11869978..11911649
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AA seq
535 aa
AA seq
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MSASLNYKSFSKEQQTMDNLEKQLICPICLEMFTKPVVILPCQHNLCRKCASDIFQASNP
YLPTRGGSTVASGGRFRCPSCRHEVVLDRHGIYGLQRNLLVENIIDIYKQESTRPEKKSD
QPLCEEHEDERINIYCLNCEVPTCSLCKVFGAHKDCQVAPLTHVFQRQKSELSDGIAVLV
GSNDRVQGVISQLEDTCKTIEECCRKQKQELCEKFDYLYGILEERKNEMTQVITRTQEEK
LEHVRALIKKYSDHLENVSKLVESGIQFMDEPEMAVFLQNAKTLLQKISEASKAFQMEKI
EHGYENLNHFAVNLSREEKVIRGIDFYREDEDEEGGEEGEGEGEEVVEVEEAEDVRTESS
GGDETPEKGLESRPPTSELQAAPEPPPALPPAADAPVTQGEVVPTGSQQTTESETPVPAA
TDTADPLFYPSWYKGQTRKTTTNPPSTPGSEGLGHVGPSGSEDPNVQKAEGAEAAASERA
AVSGKETSSPAATSQTGFEDPPLQGQAAASGSGNGADSQPARHVFSFSWLNSLNE
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcatctttgaattacaagtctttttccaaagagcagcagaccatggataacttg
gagaagcaactcatctgtcccatctgtttagagatgttcacgaaacccgtggtcattctc
ccctgccagcataacctgtgtaggaaatgtgccagtgacattttccaggcctctaacccg
tacttgcccacaagaggaggtagcactgtggcctctgggggccgattccgttgcccatcc
tgcagacacgaagtggttttggacagacatgggatctacgggcttcagaggaacctgctg
gtggaaaatatcattgacatctacaagcaggagtccaccagaccagaaaagaagtccgac
cagcccctgtgtgaggagcacgaagatgagcgcatcaacatctactgtctgaactgcgaa
gtgcccacatgctctctgtgcaaggtcttcggggcgcacaaggactgccaggtggctccc
ctcactcacgtgttccagaggcagaagtctgagctcagcgacggcattgctgtccttgtg
ggaagcaatgatcgggtccagggagtgatcagccagctggaggacacctgcaaaacgatc
gaggaatgctgcagaaaacagaaacaggaactttgtgagaagtttgattacctgtatggc
atcttggaggagaggaagaacgaaatgacccaagtcatcacccgaacccaagaggagaag
ctggaacatgtccgtgctctcatcaaaaagtattctgaccatttggagaacgtgtcaaag
ttggttgagtcaggaatacagttcatggatgagccggaaatggcagtgtttctgcagaat
gccaaaaccctgttacaaaaaatttctgaagcatcgaaggcatttcagatggagaaaata
gaacatggttatgagaacttgaaccactttgcagtcaacctcagtagagaagaaaaagta
atacgcggaattgatttttacagagaagatgaagatgaagaaggaggagaagaaggggag
ggagagggagaagaggtagtagaagtggaagaggcggaagatgttcgaacagagtcatca
ggaggagatgaaacgccagagaaaggtctggagtcccgtccgcccacctcagagctccag
gctgccccagagcctcccccagccctgccacccgctgcggatgctccggtgacacagggg
gaggttgtacccactggctctcagcagaccacagagtctgaaactccagtccctgcagca
acggacactgcggatcccttgttttaccctagttggtataaaggccaaacgcggaaaacc
accacaaaccccccttccaccccagggagcgaaggtctggggcacgtagggccttcaggt
tctgaggacccgaatgtgcagaaggcagaaggggcagaagccgcagccagtgagagggcg
gcagtgagtggtaaggaaactagctcacctgcggctacttctcagactggatttgaggac
cctcccctccagggacaggctgcagcttcagggagtgggaatggagctgattctcagcca
gctcgccatgtcttctccttttcctggttgaactccctgaatgaatga
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