Phocoena sinus (vaquita): 116742603
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Entry
116742603 CDS
T07759
Symbol
POP1
Name
(RefSeq) ribonucleases P/MRP protein subunit POP1 isoform X1
KO
K01164
ribonuclease P/MRP protein subunit POP1 [EC:
3.1.26.5
]
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
116742603 (POP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
psiu03009
]
116742603 (POP1)
03016 Transfer RNA biogenesis [BR:
psiu03016
]
116742603 (POP1)
03029 Mitochondrial biogenesis [BR:
psiu03029
]
116742603 (POP1)
Enzymes [BR:
psiu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.5 ribonuclease P
116742603 (POP1)
Ribosome biogenesis [BR:
psiu03009
]
Eukaryotic type
Pre-60S particles
RNases
RNase MRP
116742603 (POP1)
Transfer RNA biogenesis [BR:
psiu03016
]
Eukaryotic type
5'processing factors
Ribonucrease P
116742603 (POP1)
Mitochondrial biogenesis [BR:
psiu03029
]
Mitochondrial DNA transcription, translation, and replication factors
Mitochondrial transcription and translation factors
RNase MRP
116742603 (POP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
POP1_C
POP1_N
POPLD
Motif
Other DBs
NCBI-GeneID:
116742603
NCBI-ProteinID:
XP_032466237
Ensembl:
ENSPSNG00000016227
UniProt:
A0A8C9CH31
LinkDB
All DBs
Position
17:41918936..41956567
Genome browser
AA seq
1016 aa
AA seq
DB search
MSNAKERKHAKKMRNQPTNVTLSSGFVADSGVKYHNGGRKPFQSQKEPHSGTSRQRQTKT
SHHSLAESDAKEQSSSRVTFKKKGGWKAGPEGTSQEIPKYITASTFAQARAAEISAMLKA
VAQKSSNSLVFQTLPRHMRRRAMSHNVKRLPRRLQEIAQKEAEKAVHQKKEHSKNKCHKA
RRCHINRMLEFNRRQKKNKWLETHIWHAKRFHMVKRWGYCLGERPTVKSHRACYRAMTSR
CLLQDLSYYCCLELKGKEEEILKALSPMCSIDTGLTFAAVHCLSGKHQGSLMLYRANKYP
REMLGPVTFIWKAERTPGDTSESRHLWIWLHPSLKQDILEEIKAVCQCMEPTKSTVCLPD
PLLTPSQEKSRTDLPTEKIGKKRKWKDDEENAKPIKKVIGDGTRDPLQPYSWISPTTGIV
ISDLTMEMNRFRLIGPLSHSILTEALKAASVHTEGEDTEKTPHCWWIEACRNPDSVSLHH
RQETIFELLGGIPSPAEIPAGTILGLTVGDPRINLPQKRSKVLPNPEKCQDNEKVRQLLL
EGVPVECSHSFLWNQDICKSVTENKISDQDLNRKRSELLVPGSQLFLGPHESKVPILLIQ
QPGKVTGDDQRGWGSGWDVLLPKGWGMAFWIPFIYRGARVGGLKETVVHSQYKRSPNVPG
DFPDCPAGILFAEEQAKNLLEKYKRRPPAKRPNYVKLGTLAPFCCPWEQLTRDWESRVQA
QDESSAASSPGGEESSLRRDVVPCAPMLGRTRQLSDDEGTPLNDSSEPKGVMDTDGPARA
GTEGVVGQGATGSLLCVLRSRKLLRQLSAWCGPSSGNSRAAPRAPGTGHQELSREACLSI
LDRFPKALVWVRLSLLRKGSPEPHTMICVPAEEDLLQLSQDRLYRGPQEPKHSDPFKSQI
RKQKEKKKLEKRQKRGCAASEGLAEGDPAAGQQPPTLGLWSGPLPVVTSHCSRVLLGFVT
QGDFSMAVGCGEALGFVSLTGLLDTLSSQPGVERGLVLLRPPASLQYRFARIVIEV
NT seq
3051 nt
NT seq
+upstream
nt +downstream
nt
atgtctaatgcaaaagaaaggaaacatgctaagaaaatgagaaaccagcccaccaatgtg
actttatcctctggctttgtggctgacagtggtgtaaagtaccataatggaggtagaaaa
cctttccagtctcaaaaagagcctcattctggaacttcacgacagcggcaaaccaaaacg
agccaccattcactggctgagtctgatgcaaaggagcagtcttcctccagggtaaccttt
aaaaaaaagggaggatggaaagcaggtcctgagggcacttctcaggagattcccaagtat
ataaccgcttctacttttgctcaagctcgagctgctgaaatcagtgccatgttgaaagca
gtggcccagaaatcttctaattcactggttttccagacgctgccacggcacatgagacga
agagccatgagtcacaatgtcaaacgccttcctcgacggttacaggagattgcccagaaa
gaggcagagaaagcagttcatcagaaaaaagaacactcaaaaaataagtgccataaagct
cgacgatgtcacataaaccggatgctagaatttaaccggagacaaaagaagaacaaatgg
ctagaaactcacatctggcacgcgaagcggtttcacatggtcaagaggtggggctactgc
ctgggggagaggccgacagtcaagagccacagagcctgctatcgagccatgacgagccgc
tgcctccttcaggatttatcctactactgttgtttggagttgaagggcaaagaggaagaa
atactgaaggcactttctccaatgtgtagcatagacacaggattgacttttgcagcagtt
cactgtttgtctggaaagcaccaaggtagtctcatgctttaccgggcaaataaatatcct
agagaaatgctgggtcctgtgacatttatctggaaggctgagaggacccctggtgacact
tctgagagcaggcacttgtggatctggcttcatccaagtcttaaacaggatatcttagag
gaaataaaagcagtgtgccagtgtatggaacccaccaagtcgactgtctgcctccctgat
ccccttctgacaccatcccaagaaaaaagccgaactgacctgcccacagagaaaattggc
aagaaaagaaaatggaaagatgatgaggaaaatgctaaaccaattaaaaaagtcatcggt
gatggaactagagatccacttcagccgtattcttggatctctccaaccacaggcattgta
atcagtgatttgacgatggagatgaacagatttcggctgattggtccactttcccactcc
atcctaactgaagcactcaaagctgcttctgtccacacagagggagaggacacagagaag
acacctcactgttggtggattgaagcctgcaggaatcctgatagcgtttcccttcatcac
agacaggaaaccatctttgaattgttgggaggaataccgtcaccagcagaaattccagca
ggtactattttgggactgacagttggtgatccacgaataaatttgcctcaaaagaggtcc
aaagttttgcccaatccagaaaaatgccaagataatgagaaagttagacagctgcttctg
gagggtgtgcctgtggagtgttcgcatagctttctttggaaccaagatatctgtaagagt
gtcacagagaataaaatctcggatcaggatttaaaccggaagaggagtgaattgctggtg
cccgggtcacagctttttttaggtccccatgaatccaaggttcctatacttttgattcaa
cagccaggaaaagtgactggtgatgaccagcgaggctggggaagtggctgggatgtcctc
cttccaaagggctggggcatggctttctggattccatttatctatcgaggtgcaagagtt
ggaggattaaaagagactgtagtgcattctcagtataaaaggtcacctaatgtcccaggt
gatttcccagactgccctgctgggattctctttgctgaagagcaagctaagaatcttctt
gaaaagtacaaaagacgccctccggcaaaacggcccaactacgttaagcttggcaccctg
gcacctttctgctgtccctgggagcagttaactcgagactgggaatcaagagtccaggcc
caagacgaatcgtctgcagcttcgtctccaggtggtgaggagagtagcctgaggagagat
gtggtgccttgtgctcccatgcttggaaggactcgtcagctgtctgatgacgagggcaca
cccctaaatgactccagcgagcccaagggagtgatggacacagatggtccagcccgggcg
gggactgagggggtagtgggccagggtgccaccggcagtctcctctgtgttctgaggagt
agaaaattactgaggcagctgtcagcctggtgtggacccagttctgggaacagtcgggca
gccccacgagctcctggcacagggcaccaagaattgagcagagaggcctgcctgtccatc
ctggaccgcttccccaaggccctggtgtgggtcaggctgtccctgctcaggaagggcagc
cccgagccgcacaccatgatctgtgttccagctgaggaggacctcctccagctcagccag
gatcggctgtaccgtgggccccaggagcccaagcatagtgacccattcaagagccagatc
cggaaacagaaggagaagaagaaactagagaagaggcagaagcgaggctgtgctgcatct
gagggcctggcagagggggaccctgcagctggacagcagcctccgaccctgggcttgtgg
tcaggccctctcccggttgtgacttctcactgctccagagttctccttggctttgtcaca
cagggagatttttccatggctgtcggctgtggggaagccctggggtttgttagtttgacg
ggcttgctggatacgctgtccagccagccaggagtggagaggggtctcgtgttgctgagg
ccgcctgcctctctgcagtatcgatttgcgagaatcgttattgaggtgtga
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