Phocoena sinus (vaquita): 116743095
Help
Entry
116743095 CDS
T07759
Symbol
TRPC4
Name
(RefSeq) short transient receptor potential channel 4 isoform X1
KO
K04967
transient receptor potential cation channel subfamily C member 4
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu04360
Axon guidance
psiu04929
GnRH secretion
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09150 Organismal Systems
09152 Endocrine system
04929 GnRH secretion
116743095 (TRPC4)
09158 Development and regeneration
04360 Axon guidance
116743095 (TRPC4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
psiu04040
]
116743095 (TRPC4)
Ion channels [BR:
psiu04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
116743095 (TRPC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
TRP_2
Ank_2
Ank
Ank_4
Ank_3
Ank_5
PKD_channel
Motif
Other DBs
NCBI-GeneID:
116743095
NCBI-ProteinID:
XP_032467200
Ensembl:
ENSPSNG00000021533
LinkDB
All DBs
Position
18:complement(13245331..13361799)
Genome browser
AA seq
977 aa
AA seq
DB search
MAQFYYKRNVNAPYRDRIPLRIVRAESELSPSEKAYLNAVEKGDYASVKKSLEEAEIYFK
ININCVDPLGRTALLIAIENENLELIELLLSCNVYVGDALLHAIRKEVVGAVELLLNHKK
PSGEKQVPPILLDKQFSEFTPDITPIILAAHTNNYEIIKLLVQKGVSVPRPHEVRCNCVE
CVSSSDVDSLRHSRSRLNIYKALASPSLIALSSEDPFLTAFQLSWELQELSKVENEFKSE
YEELSRQCKQFAKDLLDQTRSSRELEIILNYRDDNSLLEEQSGNDLARLKLAIKYRQKEF
VAQPNCQQLLASRWYDEFPGWRRRHWAVKMVTCFIIGLLFPVFSVCYLIAPKSPLGLFIR
KPFIKFICHTASYLTFLFLLLLASQHIDRSDLNRQGPPPTIVEWMILPWVLGFIWGEIKQ
MWDGGLQDYIHDWWNLMDFVMNSLYLATISLKIVAFVKYSALNPRESWDMWHPTLVAEAL
FAIANIFSSLRLISLFTANSHLGPLQISLGRMLLDILKFLFIYCLVLLAFANGLNQLYFY
YEETKGLSCKGIRCEKQNNAFSTLFETLQSLFWSIFGLINLYVTNVKAQHEFTEFVGATM
FGTYNIISLVVLLNMLIAMMNNSYQLIADHADIEWKFARTKLWMSYFEEGGTLPTPFNVI
PSPKSLWYLIKWIWTHLCKKKMRRKPESFGTIGRRAADNLRRHHQYQEVMRNLVKRYVAA
MIRDAKTEEGLTEENFKELKQDISSFRFEVLGLLRGSKLSTVQSAQGTKDSSNSADSDEK
SDNEGSSKDKKKNFSLFDLTTLIHPRSAAIASERHTISNGSALVVQEPPREKQRKVNFVT
DIKNFGLFHRRSKQHAAEQNANQIFSVSEEVARQQAEAPPETNIQLESRGLASRGDLNIP
GLSEQCILVDHRERNTDSLGLQVGKRVCSFKSEKVVVEDTVPIIPKEKHAKEEDCSVDYD
ANLTDMVTHEDYVTTRL
NT seq
2934 nt
NT seq
+upstream
nt +downstream
nt
atggctcagttctattacaaaagaaatgttaatgccccttacagagaccgcatccctctc
aggatagtccgagcagaatcagagctctcaccctccgagaaagcctacttgaacgctgtg
gagaagggagattatgcaagtgtcaagaaatccctagaggaagctgaaatttattttaaa
atcaatattaattgcgtcgatccacttggaagaactgctctcctcattgcaatcgaaaat
gagaacttggagctcatagaactactcttaagctgtaacgtctatgttggagatgctcta
ttacacgccatcaggaaagaagttgtcggagctgtagagctgttactgaaccacaagaag
cccagtggagaaaaacaggtgcctcccatactccttgataagcagttctctgaattcact
ccagacattacacccatcattttggcagcccatacaaataattacgagataataaaactt
ttggttcagaaaggcgtctcggtgcccagaccccacgaggtccgctgcaactgcgtcgaa
tgcgtgtccagctcggatgtggacagtctccgccactcccgctccagactcaacatctac
aaggccctggccagcccctctctcatcgccctgtccagtgaagacccttttctcacagcc
tttcagttaagttgggagctccaggaactgagtaaggtggaaaatgaattcaagtcagag
tatgaggagctgtcacgacagtgcaaacaatttgctaaggacctactggatcagacaaga
agttcccgcgagctggaaatcattcttaattaccgcgatgacaacagtctcctagaagaa
caaagtggaaatgacctcgcgagactcaaattggccattaagtaccgtcagaaagagttt
gttgctcagcccaactgtcaacagctgctggcatctcgctggtacgatgagtttcccggc
tggaggagaagacactgggccgtgaagatggtgacgtgtttcataataggacttcttttt
cccgtcttctctgtgtgctaccttatagctcccaaaagcccccttggactgttcatccga
aagccatttatcaagttcatctgccacacagcatcctatttgacttttttgttcctgctg
ctgcttgcctctcagcacatcgacaggtcagacttgaacaggcaaggtccaccaccaacc
atcgtcgagtggatgatattaccatgggtcctgggttttatatggggagaaattaaacaa
atgtgggatggtggacttcaagattacatccacgattggtggaatctaatggattttgtg
atgaactcgttatatctagcaacaatctccttgaaaatcgttgcatttgtaaagtacagt
gctctcaatccacgagagtcttgggacatgtggcatcccacgctagtggctgaagcttta
tttgctattgcaaatatattcagttccctgcgactgatctcactgtttactgcaaattct
cacctggggcctctgcaaatatctctgggaagaatgctcctggacattttgaagtttcta
ttcatctactgccttgtgttgctagcatttgccaatggcctaaatcaattgtacttctat
tacgaagaaacgaaagggttaagctgcaaaggcatacgatgtgaaaagcagaataatgca
ttttcaacgttatttgagacactccagtccctgttttggtcaatatttgggctcatcaac
ttatatgtgaccaatgtcaaagcacagcatgaattcaccgagtttgttggtgccaccatg
tttgggacgtacaacatcatctctctggttgtcctacttaacatgttaatagctatgatg
aataattcttaccaacttattgctgaccatgcagatatagaatggaaatttgctcggaca
aagctttggatgagttattttgaagaaggaggtaccctgcctactcccttcaatgtcatc
ccaagccccaagtctctctggtacctgatcaaatggatatggacacacctgtgcaagaaa
aagatgagaagaaagccagaaagttttggaacaatagggaggcgagctgctgataattta
agaagacatcaccaatatcaagaagttatgaggaacctggtaaagcgatacgtggctgca
atgattagagacgccaaaactgaagaaggtctgactgaggaaaactttaaggaactgaag
caagacatttctagcttccgctttgaagtcctggggttactaagaggaagcaaactctct
acggtccaatctgctcagggcacgaaggattcttctaactccgcagactcggatgaaaag
agtgataacgaaggtagtagcaaggacaagaaaaagaactttagcctcttcgacttaacc
accctgattcacccacgatcagcagcgatcgcctccgaaagacacaccatcagcaacggc
tccgccctggtggtgcaggagccaccgagggagaagcagagaaaagtgaattttgtgacc
gatatcaaaaacttcgggttatttcatagacgatcaaaacaacacgctgccgagcaaaat
gcaaaccaaatcttctccgtttcggaagaggtggctcgtcaacaagctgaagcaccacca
gagacaaacatccaactggaatctcgagggttagcttcccggggtgacttgaacatccca
ggtctcagcgaacagtgtatattagtagatcatagagaaagaaatacggattccctgggt
ttacaggttggcaagagagtgtgttcattcaagtcggagaaggtggtggtggaggacacg
gttccaatcataccaaaggagaaacacgcaaaggaagaggactgcagtgtagactatgat
gcaaacctcacagacatggtcacccacgaagattacgtgaccacaagattgtga
DBGET
integrated database retrieval system
