Phocoena sinus (vaquita): 116743170
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Entry
116743170 CDS
T07759
Name
(RefSeq) LOW QUALITY PROTEIN: heterogeneous nuclear ribonucleoprotein K-like
KO
K12886
heterogeneous nuclear ribonucleoprotein K
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu03040
Spliceosome
psiu05203
Viral carcinogenesis
psiu05206
MicroRNAs in cancer
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116743170
09160 Human Diseases
09161 Cancer: overview
05206 MicroRNAs in cancer
116743170
05203 Viral carcinogenesis
116743170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
psiu03041
]
116743170
Spliceosome [BR:
psiu03041
]
Common components
Common spliceosomal components
hnRNP proteins
116743170
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KH_1
ROKNT
KH_2
KH_KhpA-B
KH-I_KHDC4-BBP
KH_Vigilin
DJ-1_PfpI
Motif
Other DBs
NCBI-GeneID:
116743170
NCBI-ProteinID:
XP_032467375
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Position
18:complement(26544666..26546174)
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AA seq
462 aa
AA seq
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MEMEQPEETFPNTETNGEFGKRPAEDMEDEHAFXRSRNTDEMVELHILLQSKNAGAVIGK
GGKNIKALRTDHNASVSVPDNSGPERTLSISADIETIGEILKKIIPTLKEGLQLPSPTAT
SQLPLESDAVECLNYQHYKGRDXCELRLLIHQSLAGGIIGVKGAKIKEIRENTQTTIKLF
QECGPQSTDRVVLIGGKPDRVVECIKLILHLISESPIKGRAQPYDPGFYDETYDYCGFTM
MFDDRCGRPVGFPMQGRGGFDRMPPGQGGSPMLPSRRDCDDRSPRRGAPPPPPGRGGRGG
GRAQNLPPSPPPPPRGGDLMAYDRRGRPGDHYDGMGGFSADETCDSVVDTWSPSEPQVAY
EPQGGSGYDYSYAGGHGSYGDLGGPIITTQVTTPKDLARSVIGKGGQQIKQIRHESGASI
KIDEPLEGSKDWIITITGTQAQIQNAQYLLQDSVKQYSEKFF
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atggaaatggaacagccagaggaaacctttcccaacaccgaaaccaatggcgaatttggt
aaacgccctgctgaagatatggaagacgagcacgcttttnaaagatctagaaacactgat
gagatggttgaattacacattctgcttcagagcaagaatgctggggcagtgattggaaaa
ggaggcaagaatattaaggctctccgtacagaccacaatgccagtgtttcagtcccagac
aacagtggccccgaacgcacactgagtatcagtgctgatattgaaacaattggagaaatt
ctgaagaaaatcatccctaccttgaaagagggcctgcagttgccatcacccactgcaacc
agccagctcccgctggaatctgatgctgtggaatgcttaaattaccaacactataaagga
cgcgacntttgcgagttgagattgttgattcatcagagtctggctggaggaattattgga
gtcaaaggtgctaaaatcaaagaaattcgagagaacactcagacaacaatcaagcttttc
caggaatgtggtcctcaatccactgacagagtggttcttattgggggaaaacctgatagg
gttgtagagtgcataaagctcatcctgcatcttatatcagagtctcccatcaaaggacgt
gctcagccttatgatcccggtttttatgacgaaacctatgattactgtggttttacaatg
atgtttgatgaccgctgtggacgtcccgtgggatttcccatgcagggaagaggtggtttt
gacagaatgcctcctggtcagggtgggagtcccatgcttccatccagaagagattgtgat
gataggagccctcgtcgaggagctcctccacctcctcctggacgagggggccggggtggt
ggcagagctcagaatcttcctccttctccaccaccaccacctagaggaggggatctaatg
gcctatgacagaagaggaagacctggagaccattatgatggcatgggtggtttcagtgct
gatgaaacctgcgactctgtagtagatacatggagcccatcagagccacaggtggcttat
gaaccacagggtggctctggatatgattattcctatgcagggggtcatggctcatatggt
gatcttggtggacctattattactacacaagtaactactcccaaagatctggctcgatct
gttattggcaaaggtggtcagcagattaaacaaatccgtcatgagtcaggagcatcgatc
aaaattgatgagcctttagaagggtccaaagattggatcattaccattacaggaacacag
gcccagatacagaatgcacagtacttgctgcaggacagtgtgaagcaatattctgaaaag
tttttctaa
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