Phocoena sinus (vaquita): 116743196
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Entry
116743196 CDS
T07759
Symbol
RNF17
Name
(RefSeq) RING finger protein 17 isoform X1
KO
K18405
tudor domain-containing protein 1/4/6/7
Organism
psiu
Phocoena sinus (vaquita)
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
psiu03036
]
116743196 (RNF17)
Chromosome and associated proteins [BR:
psiu03036
]
Eukaryotic type
Gene silencing
piRNA pathway
116743196 (RNF17)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TUDOR
Agenet
zf-RING_5
zf-RING_UBOX
zf-C3HC4
zf-C3HC4_2
Motif
Other DBs
NCBI-GeneID:
116743196
NCBI-ProteinID:
XP_032467402
LinkDB
All DBs
Position
18:174336..284992
Genome browser
AA seq
1617 aa
AA seq
DB search
MEAAAYCFGQVESKGQAWGAAEALCSRCGRRSSGAPGHHHELQCGHAFCELCLLITEEYS
TITCPDCEVVSTINTKQEYCPIDGCIKEDSFMEKLQPKKMKNCSQDFKKTADLLTVGLEH
STSTHGTVLNPSTVIEETETVEEIDEALKVAGKNFERLSIAVKVLEHIYNQTKEETVSLI
EVLEKQFDQLFTSLDSRKKNLCEEVVRNTDDYLSNIITAKRYIEVKKNDLDAAMKIAREL
KSTPALRIYCDLNQIIWTLKLTFESELSQVSSLKLRNSPKLNMNCSEIICMFNNMGKIEF
EDSTKFDPQESEMGQNVQKKYNHKKEFSCSGTYPSLEKKKVDISIQTSEARPPTPLQRES
SDTHLEAKHFPPQSKVVAVTPCETLAALPQAGPSPDVIIEEVIEEDLESSPELVFVSHVI
HPCHFYIRKYSQIKDATVLEKKVNQFCSKSVYLDPSDILELGARIFVNSIENGMWCRGTI
TELIPIGSESIRKPCIPTKFSVHKVALIQIFMVDFGNSEVLIVAGVGDTYVRSEHIAKQH
VTLNDLCLALRKSEPYIEGLLKDIQPLAQPCSLKDIVPQNSTEGWGEEAKIEFLKMVNKK
AVLMKVFKEEDGVLIVDLQKPPTNKISSDMPVSLRDALVFMELARFKSQLSRSHSEKNTT
LHYHPPVLPKEMTDVSVMVCHINSPTDFYLQLIKSLDFLFVLKAIEEFYKNEDAENLEIL
CPVQDQACVAKFEDGVWYRAKVIGLPGHREVEVKYVDFGNTAKITLKEMRKIKDEFLNPA
EKAIKCKLAYIEPCKGTLQWSKKATEKFQEKTQDKFMTCSVIKILEDNVLLVELFDFHGA
PGMTPTSINDQLVKEGLASYEVGYTLKDNSKKHTEVWDPSPEEIISNEVNNLNPVFAKSL
PNEDLQSLYYKELPVYICNVVSPEKIYVQWLLTEDLLHSLGEKMVSAYENSKWEPVKWKS
NMHCAVKIPDENQWQRGQIIRMVTDTLVEVLLYDVGVELVVNINCLRELQENLKTMGRLS
LECSLVDIRPAGGSDKWTATACDCLSLYLTGAVATIVIQVCEQENSTTWPLPVKIFCRDK
EGGCVDVSKYLIKRGLALRETRTNKLYNSHSLSQKSLEIPLVQGESVVTKCIKINSDPDK
RAADILSEHEVSEFKEKILEPRTTGCYKPPAIPNQKVFEAVVSCIGDDGTIFVVPKLSEF
ELIKMMNEIQSNLKCLGLLEPYFWRKGEACAVRGSDTLWYRGKVMEVIGGTIRVQYLDHG
FTEKIPQCHLYPILLYPDTPQLCIPCQLYNTIPVGNVWQPDAVELLQELLSKREVEVHIM
ELPENPWEKLSIHLYFDGMSLSYFMAHHKYCTFEHSEEILKEKPTDYNKKYEEERWEIRF
EELLLPETETPVLPPYLSSPLPPPGELYAVQVKHVVSPSEVYICLDSVDNCNLVKQHDDT
VDSGVSWEPEPESLEEALGRFNVDVETFRPLTDFRTEMPCLAEYDDGVWYRAKIVAIKEF
NPLAVLVQFVDYGSTEKLTINRLCQIPLHLMQYPARAIKVLLAGFKPPLRDTGKARIPYC
PKWSMEALWAMIDCLQGKQLYASSMAQVPQQIVTLYEDERYPVHMSLVEMGLADQDE
NT seq
4854 nt
NT seq
+upstream
nt +downstream
nt
atggaggcggcggcgtactgttttgggcaggtggagagcaagggccaggcctggggagcc
gccgaggccctgtgcagccggtgtggaagaaggtcgtccggagctccgggtcaccaccat
gaacttcaatgtggacatgctttttgtgaactgtgcttgttaataactgaagaatacagc
acaattacatgccctgattgtgaggttgtttcaactataaatacaaaacaagaatactgc
ccaatagatggatgtattaaagaagattcttttatggaaaaacttcagcctaaaaagatg
aagaattgttctcaggactttaaaaagactgctgatctactaactgttggtttagaacat
tcaacctccacacacgggactgttttgaacccatcaactgtaatagaggagactgaaact
gtggaagaaattgatgaagcattgaaggtggcagggaaaaattttgaacgattaagtatt
gctgtaaaagtgctcgaacacatatacaatcaaacaaaagaggagacagtcagtcttata
gaggttctggagaaacagtttgatcagcttttcacttctcttgattccaggaaaaagaac
ctgtgtgaagaggtagtaagaaatacggatgattacttatcaaatataataacggctaaa
agatatattgaagtgaaaaaaaatgatttggatgcagctatgaagatagcaagagaatta
aaatccacacctgctctaagaatatactgtgacctgaatcagattatctggactttgaaa
ttaacatttgagagcgaattgtcacaagtcagctctctaaaactaaggaactctcccaag
ttgaatatgaattgcagtgagatcatctgtatgttcaacaatatgggaaagattgaattt
gaggattcaacaaaatttgatcctcaagaaagtgaaatgggacagaatgttcaaaagaaa
tataatcataaaaaggaattttcttgtagtggtacatacccatcactagaaaagaaaaag
gttgacatttctatccaaactagtgaagcccgcccaccaactcctttgcaacgggaaagc
agtgatacgcatttagaagcaaaacacttcccgccacagagcaaggttgttgcagtaacc
ccctgtgaaacccttgctgctctgcctcaggcgggaccgagccctgatgtgatcatcgaa
gaagtcatcgaagaagacctggaaagttctccagagctagtttttgtaagccatgtaata
catccttgccacttctacattcggaagtattcacaaataaaagatgcaacagtattggaa
aagaaggtgaatcagttttgcagtaagagtgtataccttgatccttcagacattttggag
ctaggtgcaagaatatttgtcaacagtattgaaaatggaatgtggtgtcgaggaactatt
actgaattaattccaataggaagtgaaagtattagaaaaccttgtattccaaccaaattc
tcagtccacaaagttgcactaatacaaatattcatggtagattttggaaattctgaagtc
ctaattgttgcaggagttggtgatacttatgtgagatcagaacatattgctaagcagcat
gtcacactaaatgacttgtgtctggctctgaggaagtctgagccatatattgaagggctg
ctgaaagacatccagccattagcacagccatgctcattgaaagacattgttccacagaac
tcaactgaaggctggggagaagaagctaaaatagaatttttgaaaatggtaaataagaag
gctgttttaatgaaagtttttaaagaagaagatggtgtgctaattgtagatctgcagaag
ccaccaacaaataaaataagcagtgatatgcctgtgtctcttagagatgcattagttttt
atggaactagcaaggtttaagtctcagttatcaagaagtcactctgaaaaaaatacaact
ttacactatcatccacctgttttgcctaaggaaatgacagatgtttcagttatggtttgt
catataaatagtcctactgatttctatcttcagttgataaagagcctggattttttattt
gtattaaaagcaattgaggaattctataaaaatgaagatgcagaaaatcttgaaatcctc
tgtccagttcaagatcaagcctgtgtagctaaatttgaagatggagtttggtaccgagca
aaagttattggattgcctggacatcgtgaagttgaagttaaatatgtggattttggcaat
acagcaaaaataacacttaaagaaatgcgtaaaataaaggatgagtttctgaatcctgca
gagaaggcaattaaatgtaagctggcctatattgaaccatgtaaagggacactgcagtgg
tcaaaaaaagctacagaaaaatttcaagaaaagactcaagataagtttatgacatgttca
gtcattaaaattctggaagacaatgtgctcttagttgagcttttcgattttcatggtgct
cctggaatgactcctaccagtattaatgaccagctagttaaagagggcctagcatcttat
gaagtaggatataccctcaaagataattccaaaaagcatactgaagtatgggatccttct
ccagaagaaattatttcaaatgaagtaaacaacttaaatcctgtatttgcaaaatctcta
cctaatgaggatctgcagtcactttattataaggaactgcctgtgtacatctgcaacgta
gtgtctcctgagaagatttatgttcagtggttattaacagaagacttacttcatagttta
ggagaaaagatggtctctgcttatgaaaactcaaaatgggaacctgttaaatggaagagc
aatatgcactgtgctgttaagatcccagatgaaaatcagtggcaaaggggccagatcatc
agaatggttacagacacattggtggaggtcttgctgtatgacgtgggtgttgaactagta
gtgaatattaactgtttaagagaacttcaagaaaacctaaagaccatgggaagattatct
ttggaatgctctcttgttgatataagaccagctggtgggagtgacaaatggacagcaaca
gcctgtgactgtctctcgttgtacctcactggagccgtagcaaccatcgtcatacaagtg
tgtgaacaggaaaacagcacaacatggccattacctgtgaaaattttctgcagagataaa
gaaggagggtgtgttgatgtctccaaatatttgattaaaaggggtttggctttgagagaa
acgagaactaataaattatataacagccattcattatcccagaagtctctggaaatccca
ctggtacaaggagagtcagtggttactaagtgtattaaaattaactctgaccctgacaaa
agagctgctgatattctcagtgaacacgaggtgtctgaatttaaggagaaaattctagaa
ccaagaaccactggatgctataaaccaccagctattcctaaccagaaagtatttgaggca
gtagtcagctgcattggtgatgatggaactatatttgtggtacctaaattatcagaattt
gaactaataaaaatgatgaatgaaattcagagtaatttaaaatgccttggtcttttggag
ccttatttctggagaaagggagaagcttgtgcagtaagggggtcagatactttgtggtat
cgaggcaaagtaatggaagtcattggcggcactatcagggtacaatatttagatcacgga
ttcactgagaagattccacagtgtcatctttaccctattttgctataccctgatacaccc
caactttgtattccttgtcagctctataataccatacctgtcgggaatgtctggcaacca
gatgcagtagaactccttcaggaactgctttcaaagagagaggtggaagttcacattatg
gaattaccagaaaatccatgggagaaattatctattcatctctattttgatggaatgtca
ctttcttattttatggcacaccataagtattgtacttttgaacattctgaggaaatattg
aaggaaaaaccaacagattacaataaaaagtatgaggaagagagatgggaaataaggttt
gaggaattgctcttgcctgaaacagagactcctgttttaccaccatatttgtcttcacct
cttcctccccctggagagctctacgctgttcaagttaagcacgttgtctcacccagcgaa
gtgtatatttgccttgactctgtagacaactgtaatctggttaagcagcatgatgacaca
gttgatagtggagtcagctgggaacctgagcctgagagccttgaggaagcgctagggagg
ttcaatgtggatgtggagacattccgtcctctgacggacttcagaacagaaatgccttgc
cttgcagaatatgacgatggcgtatggtacagagcaaagattgttgccattaaagaattt
aatcctctggctgtcctggtacaatttgttgattatggatcaactgaaaagctgacaata
aacagactttgtcaaattcctcttcatcttatgcagtatccagcccgagccataaaggtt
ctcttggcagggtttaaacctcccttaagagatacaggaaaggcaagaataccgtactgt
cccaagtggagcatggaagcattgtgggctatgatagactgtcttcaaggaaaacaactt
tatgcttcttccatggctcaggtaccacaacaaatagtgacattatatgaagatgaacgg
tatccagttcatatgtcattagtagaaatggggcttgcagaccaagatgagtga
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integrated database retrieval system
