Phocoena sinus (vaquita): 116743209
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Entry
116743209 CDS
T07759
Symbol
DIS3
Name
(RefSeq) exosome complex exonuclease RRP44 isoform X1
KO
K12585
exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116743209 (DIS3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psiu03019
]
116743209 (DIS3)
Messenger RNA biogenesis [BR:
psiu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
116743209 (DIS3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
OB_Dis3
PIN_4
Rrp44_CSD1
Rrp44_S1
CSD2
OB_HELZ2
Toxin_R_bind_C
Motif
Other DBs
NCBI-GeneID:
116743209
NCBI-ProteinID:
XP_032467429
Ensembl:
ENSPSNG00000012802
UniProt:
A0A8C9C476
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Position
18:complement(47037774..47066974)
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AA seq
958 aa
AA seq
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MLKSRTFLKKTRAGGVMKIVREHYLRDDIGCGASGCAACGSAHEGPVLEPQPLDRVSSLC
PQPHYLLPDTNVLLHQIDVLEDPAIRNVIVLQTVLQEVRNRSAPVYKRIRDVTNNQEKHF
YTFTNEHHRETYVEQLQGETSNDRNDRAIRVAAKWYNEHLKKMSAENQLRVIFITNDRKN
KEKAIEEGIPAFTCEEYVKSLTANPELIDRLACLSEEGNEIDSGKIIFSEHLPLSKLQQG
IKSGAYLQGTFRASRENYLEAIVWVHGDTEDNKEIILQGLKNLNRAIHEDIVAVELLPKN
QWVAPSSVVLLDEGQNEDDMEKEEERECILKTAVSEKMLKPTGRVVGIIRRNWRPYCGML
SKSGIKESRRHLFTPADKRIPRIRIETRQASTLEGQRIIVAIDGWPRNSRYPNGHFVKNL
GEVGDKETETEVLLLEHDVPHQPFSQAVLSLLPKMPWSITEKDMKNREDLRHLCVCSVDP
PGCTDIDDALHCRELENGNLEVGVHIADVSYFIRPGNALDQESARRGTTVYLCEKRIDMV
PELLSSNLCSLRSNVDRLAFSCIWEMNHNAEILKTRFTKSVINSKASLTYAEAQMRIDSS
TMNDSITTSLRGLNKLAKILKKGRIENGALTLSSPEVRFHMDSETHDPIDLQTKELRETN
SMVEEFMLLANISVAKKIHEEFSEHALLRKHPAPPPSNYEILVKAAKSKNLEIKTDTAKA
LADSLDRADSLTFPYLNTLLRILATRCMMQAVYFCSGMDTDFHHYGLASPIYTHFTSPIR
RYADIIVHRLLAVAVGADCTYPELTDKHKLAELCKNLNFRHKMAQYAQRASVAFHTQLFF
KSKGIVSEEAYILFVRKNALVVLIPKYGLEGTVFFEEKDKPKPRLTYDDEIPSLKIEDTV
FHIFDKVKVKIMLDSSNLQHQKIRMSLVEPQIPGISVPTDTSNMDISEPETKKKKLQK
NT seq
2877 nt
NT seq
+upstream
nt +downstream
nt
atgctcaagtccaggactttcttaaaaaagacgcgggcgggcggcgtgatgaagatcgtg
cgcgagcactacttgcgagacgacataggctgcggtgcgtctggatgcgcggcgtgcgga
agtgcgcacgagggcccggtcctcgagccgcagcccctggatcgggtcagcagcctctgc
ccacagccgcactacttgctgcctgacaccaacgtgctgctccaccagattgatgtcctt
gaggaccctgccatcaggaatgtcattgtgctacaaacagttctccaagaagtgagaaat
cggagtgctccggtatataaacgaatccgagatgtgactaataaccaggagaagcatttc
tatacatttactaacgagcaccatagagaaacttatgtagaacaattacagggagaaact
tctaatgacaggaatgatagagccattcgagtagcagcaaagtggtacaatgaacatttg
aagaaaatgtcggcagagaatcagctgcgagttatcttcataaccaatgacaggaaaaac
aaagagaaagccatagaagaagggataccagctttcacttgtgaagaatatgtaaaaagc
ctaactgctaaccccgaactcatagatcgtcttgcttgtttgtctgaagaagggaatgaa
atagatagtggaaaaataatattttcagagcatcttccattaagtaagctacaacaaggc
ataaaatctggtgcataccttcaagggacatttagagccagcagggaaaattacttagaa
gctatagtatgggttcatggtgacactgaagacaataaagagataatcttacaaggactt
aaaaatttaaaccgagctattcatgaagatattgtggctgtggagcttcttccgaagaat
cagtgggtagcaccatcttctgtggttttacttgacgaaggtcaaaatgaagatgatatg
gagaaagaagaggagagagaatgcattcttaagactgctgtaagtgaaaaaatgttaaag
cctacaggtagagttgttggaataataagaaggaactggagaccatattgtggcatgctt
tccaagtctggtattaaagagtcaagaagacatctctttactcctgctgataagagaatc
cctagaattcggatagaaaccagacaggcctctacattagaagggcagagaattattgtt
gctattgatggttggccgagaaattccagatatccaaatgggcactttgtaaaaaattta
ggtgaagtcggagacaaagagactgaaacggaagttttgttacttgagcacgatgttccc
catcagcctttctcacaggctgttcttagccttctaccaaagatgccctggagcatcact
gagaaggacatgaaaaacagagaagacctgagacatctgtgtgtttgtagtgtggacccc
ccaggatgtactgatatagatgatgctctccattgtagagaacttgaaaatggaaatttg
gaggttggtgttcatattgccgatgttagctattttattagaccaggaaatgcattggat
caagagtcagctagaaggggaacaactgtgtatctttgtgaaaagaggattgacatggtt
ccagagttgcttagctctaacttatgttccctaagatctaacgttgacaggttggcattt
tcatgtatttgggaaatgaatcacaatgcagaaatcttaaaaacaaggtttaccaaaagt
gtcattaattcaaaggcttcccttacatatgctgaagctcagatgagaattgattcatca
accatgaatgatagtattactactagtctccgtggactaaataaactagctaaaattttg
aaaaaaggaagaattgaaaatggggctttgactctttcttctccagaagttcgattccac
atggacagtgaaactcatgatcctatagatctgcagaccaaggaacttagagaaacaaat
tccatggtggaagaatttatgttacttgccaacatctctgttgcaaaaaaaattcacgaa
gaattttctgagcatgctctgcttcgaaaacatcctgcccctcctccatcaaattacgaa
attcttgttaaggcagctaaatccaagaatttggaaattaaaactgatacagccaaggct
ttggctgactctttggaccgggctgattcacttaccttcccatatctaaacaccctgtta
agaatattggcaactcgctgcatgatgcaagctgtgtacttctgctctggaatggatact
gattttcatcactatggcttagcgtccccaatatacacacattttacttcacccatccga
agatacgcagacatcatcgttcatcggttattggctgtggctgtcggggctgactgcact
tacccagagttgacagacaaacacaagcttgcagaattatgtaaaaatctcaattttcgg
cacaaaatggcacagtacgctcagcgtgcatctgtggcttttcatacccagttatttttc
aaaagcaaaggaatagtaagtgaagaagcttatattctatttgtgagaaagaatgctctt
gtggtgttaattccaaagtatggattagaaggtacagtgttttttgaagaaaaggacaaa
ccaaagccacggcttacttacgatgatgagataccatcacttaaaatagaagatacagtg
tttcatatatttgataaagttaaagtgaaaatcatgttagactcatctaatcttcagcat
cagaaaatccgaatgtccctggtagaaccacagataccaggaataagcgttcctactgat
acttcaaacatggacattagtgaaccagagacaaagaagaagaagcttcaaaaatag
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