Phocoena sinus (vaquita): 116743280
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Entry
116743280 CDS
T07759
Symbol
UPF3A
Name
(RefSeq) regulator of nonsense transcripts 3A isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu03013
Nucleocytoplasmic transport
psiu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
116743280 (UPF3A)
03015 mRNA surveillance pathway
116743280 (UPF3A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psiu03019
]
116743280 (UPF3A)
Messenger RNA biogenesis [BR:
psiu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
116743280 (UPF3A)
mRNA cycle factors
P-body specific factors
116743280 (UPF3A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
Motif
Other DBs
NCBI-GeneID:
116743280
NCBI-ProteinID:
XP_032467546
Ensembl:
ENSPSNG00000021422
UniProt:
A0A8C9EBK3
LinkDB
All DBs
Position
18:79775984..79802609
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AA seq
484 aa
AA seq
DB search
MRSEKEGEGGPGLPVTTRGPSGKEKPSPTESHFRRESQRREPEAPVAWSPGCGGGAVEPR
EEKRTVLSKVVIRRLPPSLTKEQLEQQLHPLPAHDYLGLFTADLSLYPHLYSRAYINFRN
PDDILLFRDRFDGYIFIDSKGLEYPAVVEFAPFQKTAKRKLKKKDTQAGSIEDDPEYKKF
LETYCVEEEKTSANPETLLGDIEAKTRELIARRTTPLLEYIKSRKLEKQRFREEKREERR
RKELERKCLREEEIRRRREEERCKRRAAEKQQKTAEKEVRRKLLKKSEKGEESSTEKPKE
RGEEIDTRDGKQELGPSCAVMKPKPLESSLQELRGKSQNDSDKEQRDVERRFREKELEAQ
RYHLGDSRKHRAHYELDKFSRRSKEELKRGKGFTPDRGKKGSQDGGGPVGAAETPGREKS
EDELAPKKEDTGSKDRPGLQLYQPRGGNRARECDGRPPEEGRDRRRGEVEDSPGVGAEKS
EEAE
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atgcgctcggagaaggagggagaggggggcccagggttgcccgttactacgcggggtccg
agcgggaaggagaagccgtcgcccacagaaagccacttccgccgggagtcccagcggcgg
gagcctgaagcgccagtagcctggtcccccggctgtgggggcggtgcagtcgaacctcgc
gaggaaaagaggacggtcctcagcaaggtggtcatccggcggcttcctcccagcctcacc
aaggagcagctggaacagcagcttcacccccttcctgcacatgattacctcgggctcttt
actgctgatctcagtctttatcctcatctctattcaagagcatacattaattttagaaat
cctgatgacatcctgctttttagagatcgttttgatggatatatcttcattgacagtaaa
ggcctagaatatcctgcagtggtagaatttgctccattccagaagacagccaaaaggaag
ctaaagaaaaaagacacccaagctggaagcattgaagatgatccagaatataagaagttt
ttagaaacttactgtgtggaggaggagaaaactagtgccaatcctgaaactcttctggga
gacatagaggcaaagacaagagaacttattgctagaagaaccacacctcttttggagtat
attaaaagtagaaaattagaaaagcagagatttcgagaagaaaagcgagaagaacggagg
aggaaggagttggaaaggaagtgcttacgggaagaagagataagaaggagaagggaagag
gagagatgtaagaggagagcagcagaaaaacagcagaaaactgctgagaaagaagtaagg
aggaagcttctcaagaaatcagaaaagggagaggagtcaagcactgagaagccaaaagaa
agaggagaggaaattgacaccagagatgggaaacaggaactcggtcccagctgtgcagtc
atgaagcccaagcccttggagagctcgttgcaggagctcaggggaaagtcacaaaatgac
agtgataaagagcaaagggacgtggagagaagattccgagaaaaagagcttgaagcacaa
agataccacttgggtgacagcagaaaacatagagctcactatgagttggataagttttca
agaagaagcaaagaagagctgaaaagggggaaaggattcaccccagaccgagggaagaag
gggagccaggatgggggcggccctgtgggggcagcagagacaccaggaagggagaagagc
gaagatgagctggcacccaagaaggaggacacgggaagcaaggaccgaccaggcttgcag
ctgtaccagcccagaggtggcaaccgagcccgtgaatgtgatggaagaccccctgaggag
ggccgtgacaggaggaggggtgaggtggaagattcaccaggggttggagctgagaagagc
gaagaggcagagtga
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integrated database retrieval system
