Phocoena sinus (vaquita): 116743332
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Entry
116743332 CDS
T07759
Symbol
EXOSC8
Name
(RefSeq) exosome complex component RRP43
KO
K12586
exosome complex component RRP43
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116743332 (EXOSC8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psiu03019
]
116743332 (EXOSC8)
Messenger RNA biogenesis [BR:
psiu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
116743332 (EXOSC8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
116743332
NCBI-ProteinID:
XP_032467629
Ensembl:
ENSPSNG00000020154
UniProt:
A0A8C9CTP4
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All DBs
Position
18:12718659..12724666
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AA seq
276 aa
AA seq
DB search
MAAGFKTVEPLEYYRRFLKENCRPDGRELGEFRTTTVNIGSIGTADGSSLVKLGNTTVIC
GIKAEFGAPPTDAPDKGYVVPNVDLSPLCSWRFRSGPPGEEAQVASQFIADVIENSQVIQ
KEDLCISPGKLAWVLYCDLICLNHDGNILDACTFALLAALKNVQLPEVTVNEETALAEVN
LKKKSYLNIRTHPIATSFAVFDDTLLIVDPTEEEENLATGTLTVVMDEEGKLCCLHKPGG
SGLTGAKLQDCMSRAVTRHKEVKKLMDEVFKSMKPK
NT seq
831 nt
NT seq
+upstream
nt +downstream
nt
atggctgccggatttaaaactgtggaacctctggagtattacagaagatttttgaaagag
aattgccgtcctgatggaagagaacttggtgaattcaggaccacaactgtcaacataggt
tcaattggtactgcagatggttcttctttagtgaagctgggaaatactacagtaatttgt
ggaattaaagcggaatttggagcaccaccaacagatgcccctgataaaggatatgttgtt
cctaatgtggatctatcacctctgtgttcctggagatttcggtctggacctcctggagaa
gaggcccaggtggccagccagttcattgcagatgtcattgaaaattcacaggtaattcag
aaagaggacttgtgtatctctccaggaaagcttgcttgggttctatactgtgatctcatt
tgcctcaaccatgatggaaacattttggatgcttgcacctttgctttgttagcagcttta
aaaaatgtacagttgcctgaagttactgtaaatgaagaaactgctttagcagaagttaat
ttaaagaagaaaagttatttgaatattagaactcatccaattgcaacttcctttgctgtg
tttgatgacactctgcttatagttgaccctactgaagaggaggaaaacctggcaactgga
accttaacagtagtaatggacgaggaaggcaagctatgttgtcttcacaaaccaggtgga
agtggactgactggagctaaacttcaagactgtatgagccgagcagttacaagacacaaa
gaagtaaaaaaactgatggatgaagtatttaagagtatgaaacccaaataa
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