Phocoena sinus (vaquita): 116743339
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Entry
116743339 CDS
T07759
Symbol
RFC3
Name
(RefSeq) LOW QUALITY PROTEIN: replication factor C subunit 3
KO
K10756
replication factor C subunit 3/5
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu03030
DNA replication
psiu03410
Base excision repair
psiu03420
Nucleotide excision repair
psiu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
116743339 (RFC3)
03410 Base excision repair
116743339 (RFC3)
03420 Nucleotide excision repair
116743339 (RFC3)
03430 Mismatch repair
116743339 (RFC3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psiu03032
]
116743339 (RFC3)
03036 Chromosome and associated proteins [BR:
psiu03036
]
116743339 (RFC3)
03400 DNA repair and recombination proteins [BR:
psiu03400
]
116743339 (RFC3)
DNA replication proteins [BR:
psiu03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
116743339 (RFC3)
DNA Replication Termination Factors
ELG1-RFC complex
116743339 (RFC3)
Chromosome and associated proteins [BR:
psiu03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
116743339 (RFC3)
DNA repair and recombination proteins [BR:
psiu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
116743339 (RFC3)
Check point factors
HRAD17(Rad24)-RFC complex
116743339 (RFC3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC_C
RCF1-5-like_lid
DNA_pol3_delta2
Rad17
AAA
AAA_22
AAA_16
ABC_tran
AAA_2
zf-HC2
AAA_11
ATPgrasp_ST
DUF2247
Motif
Other DBs
NCBI-GeneID:
116743339
NCBI-ProteinID:
XP_032467637
LinkDB
All DBs
Position
18:10051005..10065883
Genome browser
AA seq
356 aa
AA seq
DB search
MSLWVDKYRPCSLGQLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY
GVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ
LETNSQKDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL
AVRVPAPSIEDICHVLSTVCKKEGLNLPSQLARRLAEKSCRNLRKALLMCEACRVQQYPF
TADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELL
HNCDGQLKGEVAQMXAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFMEDGLEGMIF
NT seq
1071 nt
NT seq
+upstream
nt +downstream
nt
atgagcctctgggtggacaaataccggccctgctctttgggacagctggactatcacaag
gagcaggcggcccagctgcgcaacctggtgcagtgtggtgactttcctcatctgttagtc
tatggaccatcaggtgctggaaaaaagacaagaattatgtgtattctacgtgaactttat
ggtgtgggagtggaaaagttgagaattgaacatcagaccatcacaactccatctaaaaag
aaaattgaaattagcactattgcaagcaattaccaccttgaagttaatcccagtgatgct
ggaaatagtgaccgggtagtaattcaggagatgttgaaaacagtggcacaatcacagcaa
cttgaaacaaactctcaaaaagattttaaagtcgtgttattgacagaagttgacaaactc
actaaagatgctcagcatgccttgcgcagaaccatggaaaagtatatgtccacctgcagg
ttgatcttgtgttgcaattctacatcaaaagtgataccacctattcgtagtaggtgcctt
gcagttcgtgtgcctgctcccagcattgaagatatttgccatgtgttatctactgtgtgc
aagaaggaaggtctaaatcttccttcacaactggctcgtagacttgcagagaagtcctgc
agaaatctcagaaaagccctgcttatgtgtgaagcatgcagagtgcaacaatatcctttt
actgcagatcaagaaatccctgaaacagattgggaggtgtatctgagggagactgccaat
gctattgtcagtcagcagactccacagaggctccttgaagttcgtgggagactctatgag
cttctgactcattgtattcctcctgaaataataatgaagggccttctctcagaactttta
cataattgtgatggacaactgaaaggggaagtggcccagatgncagcttactatgaacat
cgtctacagctgggtagcaaagccatttatcacttggaagcatttgtggccaaatttatg
gcactttataagaagttcatggaggatggattggaaggcatgatattctga
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