KEGG   Phocoena sinus (vaquita): 116743345
Entry
116743345         CDS       T07759                                 
Symbol
CUL4A
Name
(RefSeq) cullin-4A isoform X1
  KO
K10609  cullin 4
Organism
psiu  Phocoena sinus (vaquita)
Pathway
psiu03420  Nucleotide excision repair
psiu04120  Ubiquitin mediated proteolysis
psiu05170  Human immunodeficiency virus 1 infection
Brite
KEGG Orthology (KO) [BR:psiu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    116743345 (CUL4A)
  09124 Replication and repair
   03420 Nucleotide excision repair
    116743345 (CUL4A)
 09160 Human Diseases
  09172 Infectious disease: viral
   05170 Human immunodeficiency virus 1 infection
    116743345 (CUL4A)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:psiu04121]
    116743345 (CUL4A)
   03400 DNA repair and recombination proteins [BR:psiu03400]
    116743345 (CUL4A)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:psiu04147]
    116743345 (CUL4A)
Ubiquitin system [BR:psiu04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Cullin
     116743345 (CUL4A)
DNA repair and recombination proteins [BR:psiu03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      116743345 (CUL4A)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      116743345 (CUL4A)
Exosome [BR:psiu04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   116743345 (CUL4A)
SSDB
Motif
Pfam: Cullin Cullin_Nedd8 SecA_SW ADH_zinc_N
Other DBs
NCBI-GeneID: 116743345
NCBI-ProteinID: XP_032467642
Ensembl: ENSPSNG00000020396
UniProt: A0A8C9CPB5
LinkDB
Position
18:79156992..79202640
AA seq 761 aa
MADETPRKGSFSALVGHTNGLTKPASLAAAAVTSKPGAAGGSKKLVIKNFRDRPTLPDNY
TQDTWQKLHEAVRAIQSSTSIRYNLEELYQAVENLCSHKVSPVLYQQLRQVCEGHVQAQI
LQFREDSLDSVLFLKKINTCWQDHCRQMIMIRSIFLFLDRTYVLQNSMLPSIWDMGLELF
RNHIISDKMVQTKTIDGILLLIQRERSGEAVDRSLLRGLLGMLSDLQVYKDSFELKFLEE
TNCLYAAEGQRLMQEREVPEYLNHVSKRLGEEGDRVITYLDHSTQKPLIACVEKQLLGEH
LTAILQKGLDHLLDENRVPDLTQMYQLFSRVRGGQQALLQHWGEYIKTFGTTIVINPEKD
KDMVQDLLDFKDRVDHVIEVCFQRNEKFINLMKESFESFINKRPNKPAELIAKHVDSKLR
AGNKEATDEELERILDKIMILFRFIHGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSK
LKHECGAAFTSKLEGMFKDMELSKDIMVHFKQYMQNQSDPGSIDLTVNILTMGYWPTYTP
MEVHLTPEMIKLQEVFKTFYLGKHSGRKLQWQTTLGHAVLKAEFKEGKKELQVSLLQTLV
LLMFNEGDGFSFEDVKTATGIEGSELRRTLQSLACGRARVLIKSPRGREVEDGDRFVFNG
EFKHKLFRIKINQIQMKETVEEQASTTERVFQDRQYQIDAAIVRIMKMRKTLGHNLLVSE
LYNQLKFPVKPGDLKKRIESLIDRDYMERDQDSPNQYRYVA
NT seq 2286 nt   +upstreamnt  +downstreamnt
atggccgacgagacccctcggaagggcagcttctcggcgcttgtcggacacaccaacggc
ctcaccaagcccgcgtctctcgccgcggccgccgtcacctccaagcccggggccgccggc
ggctccaagaagctcgtgatcaagaatttccgagacagacctacattgcctgacaactac
actcaggacacctggcagaaacttcatgaagcagtgagagccatacagagtagtacgtcc
atcagatataacctggaagagctctaccaggctgttgaaaatctttgttctcacaaagtt
tccccagtgctctaccagcagctgcgccaggtctgtgaaggccacgtccaagcacaaatc
cttcagtttagagaagactcgctagatagtgttttatttttaaagaagattaacacatgc
tggcaggatcactgcagacaaatgatcatgatcagaagtatcttcctgtttctggatcgt
acttacgtgcttcagaattccatgcttccttccatctgggacatgggattagaactcttc
agaaaccatattattagtgataaaatggttcagacaaagaccatcgacggcatcctgctg
ctgatccagcgggagcggagcggggaggccgtggaccgcagcctgctgcggggcctgctg
ggcatgctgtccgacctccaggtgtataaagattcatttgaactgaagtttttggaagaa
actaattgtttatatgctgcagaaggccaaaggttaatgcaagaaagagaggttccggag
tacctgaaccatgtgagtaagcgcctgggggaggagggtgaccgcgtgatcacgtatcta
gaccacagcacacagaaaccactgattgcctgtgtggagaagcagctgttaggagaacat
ttaacagcgattctgcagaaagggctggaccacctgctggatgagaacagagtgcctgac
ctcactcagatgtaccagctgttcagccgcgtgcggggcggccagcaggcgctgctgcag
cactggggcgagtatatcaagacttttgggacaacaatcgttatcaatcctgaaaaagat
aaagatatggtgcaggacctgctggatttcaaggaccgagtagaccacgtgatagaagtg
tgcttccagaggaacgagaagttcatcaacctgatgaaggagtccttcgaatcgttcatc
aacaagaggccaaacaaacctgcagagctgatcgcaaagcacgttgattcaaaattgaga
gcaggtaataaggaagcaacggacgaggagctggagaggatcctggacaagatcatgatc
ctattccggttcattcacggtaaagatgtctttgaggcattttataagaaagatttagca
aaaagactcctcgttggaaaaagtgcctccgttgatgctgaaaagtctatgctgtcgaag
ctgaagcacgagtgtggggctgctttcaccagcaagctggaaggcatgttcaaggacatg
gagctctctaaggacatcatggttcatttcaagcagtatatgcagaatcaaagtgaccca
ggctctatagacctgacagtgaacatacttacgatgggatactggccgacatacaccccc
atggaagtacatctaactccagagatgattaaacttcaggaagtattcaagacgttttat
cttggaaagcacagcggtcgaaagcttcagtggcaaactacactgggtcacgctgtgttg
aaagcagagtttaaagaggggaagaaggagctgcaggtgtcgctgctccagacgctggtg
cttctcatgttcaacgaaggtgacgggttcagcttcgaggatgtaaagacggccaccggg
atagagggcagcgagctgcggaggacgttgcagtccctggcctgcgggagggcgcgcgtg
ctgatcaaaagtcccagagggagggaggtcgaagacggagacagattcgtcttcaatgga
gagttcaagcacaagttgtttcggatcaagatcaatcaaatccagatgaaggaaaccgtt
gaagagcaggccagcaccacggagcgcgtgttccaggaccggcagtaccagatcgacgcc
gccatcgtcaggataatgaagatgagaaagacgctgggccacaacctgctcgtttccgaa
ttgtataatcagctgaagtttcccgtcaagcctggagatttgaaaaagagaatcgaatct
ctcatagacagagactacatggagagagaccaggacagtcccaaccagtaccgctacgtg
gcctga

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