Phocoena sinus (vaquita): 116743480
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Entry
116743480 CDS
T07759
Symbol
DDX19A
Name
(RefSeq) ATP-dependent RNA helicase DDX19A isoform X1
KO
K18655
ATP-dependent RNA helicase DDX19/DBP5 [EC:
5.6.2.7
]
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu03013
Nucleocytoplasmic transport
psiu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
116743480 (DDX19A)
03015 mRNA surveillance pathway
116743480 (DDX19A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psiu03019
]
116743480 (DDX19A)
Enzymes [BR:
psiu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
116743480 (DDX19A)
Messenger RNA biogenesis [BR:
psiu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
116743480 (DDX19A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
116743480
NCBI-ProteinID:
XP_032467803
Ensembl:
ENSPSNG00000018305
LinkDB
All DBs
Position
19:complement(46129101..46149524)
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AA seq
516 aa
AA seq
DB search
MATDSWALAVDKQEAAVKSVSGFRSRRGERTGGPKPTLRGVQGAPWVGQAVAHTPLKMSN
LQIKEEKVKPDTNGVIKTNATAEKTDEEEKEDRAAQSLLNKLIRSNLVDNTNQVEVLQRD
PNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTG
KTAAFVLAMLSRVEPAERYPQCLCLSPTYELALQTGKVIEQMGRFHPELKLAYAVRGNKL
ERGQKITEHIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRM
LPRNCQMLLFSATFEDSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVLCNSRDEKFQA
LCNIYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMVVEQRAAVIERFREGK
EKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMV
DSKHSMNILNRIQEHFNKKIERLDTDDLDEIEKIAN
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
atggccaccgattcgtgggccctggcagtggacaagcaggaagcggctgtcaagtcggtc
agtggcttcagatccaggcggggcgagcgtactggagggcccaagccgaccctgcgtgga
gtccagggagctccctgggttgggcaggccgtggcccacacacccctaaagatgagtaat
ttgcagatcaaggaagagaaagtcaaaccagataccaatggtgttatcaaaactaatgcc
actgcagagaaaacagatgaagaagagaaagaggacagagccgcccagtccttactcaac
aagctgatcagaagcaaccttgtcgataacaccaaccaagtggaagtcctgcagcgagat
ccaaactccccactctactcggtgaagtccttcgaggagcttcggctgaaaccacagctt
ctgcagggagtctatgccatggggttcaatcgaccatccaagatacaagagaatgcgtta
cccatgatgcttgctgagcccccacagaacctgattgcccagtctcagtctggtactggt
aaaacagctgccttcgtcctggccatgctcagccgagtggaaccagcagagagatacccc
cagtgtctgtgcctctccccaacatatgagctggcgcttcagacaggaaaagtgattgag
cagatgggcagatttcatccggaactaaagcttgcttatgctgttcgaggcaataaattg
gaaagaggtcagaagatcactgagcacattgtcattggcacccctgggaccgttctggac
tggtgctccaagctcaagttcattgaccccaagaagatcaaggtgtttgttctggatgag
gctgacgtgatgatagctactcagggccaccaagatcagagcatccgcatccagaggatg
cttcccaggaactgccagatgctgcttttctctgccaccttcgaagactctgtctggaaa
tttgcccagaaagtggtcccagacccaaacatcatcaaactgaagcgcgaggaggagacg
ctggacaccatcaagcagtattatgtcctgtgcaatagcagagatgagaagttccaggct
ttgtgtaatatctacggggccatcaccattgctcaagccatgatcttctgccatacccgc
aaaacagctagttggctggcagcagagctctcaaaagaaggccaccaggtggctctgctg
agtggtgaaatggtggtggagcagagggctgcagtgattgagcgcttccgagagggcaaa
gagaaggttctggtcaccaccaacgtgtgtgcccgcggtatcgatgtggaacaggtgtct
gtcgtcatcaactttgaccttcctgtggacaaggatgggaacccggacaacgagacctac
ctgcaccggatcgggcgcaccggccgctttggcaagaggggcctggccgtgaacatggtg
gacagcaagcatagcatgaacatcctgaacagaatccaggagcatttcaataagaaaata
gaaagactggacacagatgacttggacgagattgagaaaatagccaactga
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