Phocoena sinus (vaquita): 116743580
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Entry
116743580 CDS
T07759
Symbol
VPS4A
Name
(RefSeq) vacuolar protein sorting-associated protein 4A isoform X1
KO
K12196
vacuolar protein-sorting-associated protein 4
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu03250
Viral life cycle - HIV-1
psiu03272
Virion - Hepatitis viruses
psiu04144
Endocytosis
psiu04217
Necroptosis
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
116743580 (VPS4A)
03272 Virion - Hepatitis viruses
116743580 (VPS4A)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
116743580 (VPS4A)
09143 Cell growth and death
04217 Necroptosis
116743580 (VPS4A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
psiu04131
]
116743580 (VPS4A)
03400 DNA repair and recombination proteins [BR:
psiu03400
]
116743580 (VPS4A)
Membrane trafficking [BR:
psiu04131
]
Endosome - Lysosome transport
Endosomal sorting complexes required for transport (ESCRT)
ESCRT-III complex
116743580 (VPS4A)
DNA repair and recombination proteins [BR:
psiu03400
]
Eukaryotic type
Check point factors
Other check point factors
116743580 (VPS4A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
MIT
AAA_lid_3
TIP49
AAA_16
AAA_22
AAA_14
AAA_5
RuvB_N
IstB_IS21
AAA_25
DUF815
AAA_2
AAA_18
AAA_33
AAA_17
nSTAND3
RNA_helicase
AAA_24
PhoH
ResIII
AAA_28
Mg_chelatase
Parvo_NS1
AAA_7
NACHT
YhdB
bpMoxR
ABC_tran
TPR_2
Motif
Other DBs
NCBI-GeneID:
116743580
NCBI-ProteinID:
XP_032468073
Ensembl:
ENSPSNG00000011978
LinkDB
All DBs
Position
19:41823660..41837210
Genome browser
AA seq
472 aa
AA seq
DB search
MTTSTLQKAIDLVTKATEEDKAKNYEEALRLYQHAVEYFLHAIKYEAHSDKAKESIRAKC
MQYLDRAEKLKDYLRNKEKHGKKPVKENQSESKGSDSDSEGDNPEKKKLQEQLMGAVVME
KPNIRWNDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAV
ATEANNSTFFSVSSSDLMSKWLGESEKLVKNLFELARQHKPSIIFIDEVDSLCGSRNENE
SEAARRIKTEFLVQMQGVGNNNDGTLVLGATNIPWVLDSAIRRRFEKRIYIPLPEEAARA
QMFRLHLGSTPHNLTDANIHELARKTEGYSGADISIIVRDSLMQPVRKVQSATHFKKFWL
EGDHLRLCDARGQGTVTVTSATPAVSTVLMRVVDPAACLKAVGAKSHTMKRNSIHAADVC
QVLPRVLLCAWHCSRCWGDTCDHSRQKSLPYRASFLVGETDNKQNKDSFLRG
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
atgacaacgtcaaccctccagaaagccattgatctggtgacaaaagccacagaagaggat
aaagccaagaactacgaggaagccctccggctctaccagcatgccgtggagtatttcctg
cacgctatcaaatatgaggcacacagcgacaaagccaaggagagcattcgagccaagtgc
atgcagtacctagaccgggcagagaagctgaaggattatttacgaaataaagagaagcat
ggcaagaagccagtcaaagagaaccagagcgagagcaagggcagcgatagtgacagtgaa
ggggataatccagagaaaaagaaattgcaagaacagctgatgggtgctgtcgtgatggag
aagcccaacattcggtggaatgacgtggccgggctggagggggccaaggaggccctcaaa
gaagctgtcattttgccaattaaattcccacacttgttcacaggcaagcgtaccccttgg
cggggaatactgctcttcggaccccctggcacagggaaatcctacttggccaaagcagtg
gcaacggaggccaacaactctaccttcttctctgtgtcctcctcagacttgatgtctaag
tggttgggggagagtgagaagctagtcaagaacctgtttgagctggccaggcagcacaag
ccctccatcatcttcattgacgaggtggattcgctctgcggatcccgcaacgaaaatgag
agtgaggccgcccgaaggatcaaaacggagttcctggtccagatgcagggggtggggaat
aacaatgatgggactctggtacttggtgccacaaacatcccgtgggttttggattcagcc
attagaaggaggtttgaaaagcgaatttatatcccattgccggaggaggctgcccgtgcc
cagatgttccggttgcatctggggagcactcctcacaacctcacagacgccaacatccac
gagctggcccggaagacggaaggctactcgggcgcagacatcagcatcatcgtgcgggat
tccctcatgcagcccgtgaggaaagtacagtcagcgacacacttcaaaaagttctggctg
gagggcgaccatctcagattgtgtgatgctagaggacagggcaccgtgactgtcacctct
gccacccctgcagtcagcactgtgctgatgcgcgtggtagaccctgctgcatgtctgaaa
gcagtgggtgcaaaatcacacaccatgaagaggaactccattcacgcagcagatgtttgt
caggtgttgccgagggtcctactgtgtgcttggcactgttctaggtgttggggagacact
tgtgaccatagcagacaaaaatccctgccctacagggcctcgtttctagtgggggagaca
gacaacaaacaaaataaagactcatttcttagagggtaa
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