Phocoena sinus (vaquita): 116743758
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Entry
116743758 CDS
T07759
Symbol
CNOT3
Name
(RefSeq) CCR4-NOT transcription complex subunit 3 isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116743758 (CNOT3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psiu03019
]
116743758 (CNOT3)
Messenger RNA biogenesis [BR:
psiu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
116743758 (CNOT3)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
116743758 (CNOT3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Cluap1
DUF4407
Motif
Other DBs
NCBI-GeneID:
116743758
NCBI-ProteinID:
XP_032468567
Ensembl:
ENSPSNG00000014367
LinkDB
All DBs
Position
19:complement(3642454..3659426)
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AA seq
735 aa
AA seq
DB search
MADKRKLQGEIDRCLKKVSEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
QIKTWVASNEIKDKRQLIDNRKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQKE
KEEVGQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKDQKQDRIEGLKRHIEKHRYH
VRMLETILRMLDNDSILVDAIRKIKDDVEYYVDSSQDPDFEENEFLYDDLDLEDIPQALV
ATSPPSHSHMEDEIFNQSSSTPTSTTSSSPIPPSPANCTTENSEDDKKRGRSTDSEISQS
PAKNGSKPVHSSQHPQSPAVPPSYPSGPPPAASALSTAPGNNGAPAPAAPPSALGAKASP
APSHSSGTPAPYAQAVAPPAPSGPSPAQPRPPSVQPGGGGGGGKQNGATSYSSVVADSPA
EVALSSGGGSSANSQALGPQSGPHNPPPSTSKEPNATAPTGAGGVAPGSGNNSGGPSLLV
PLPVNPPSSPTPSFSEAKAAGALLNGPPQFSAAPEIKAPEPLSSLKSMAERAAISSGIED
PVPTLHLTERDIILSSTSAPPASAQPALQLSEVNIPLSLGVCPLGPVPLTKEQLYQQAME
EAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDTVEFYQRLSTETLFFIFYYL
EGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTYIYFDYEKWGQRKKE
GFTFEYRYLEDRDLQ
NT seq
2208 nt
NT seq
+upstream
nt +downstream
nt
atggcggacaagcgcaaactccaaggtgagattgatcgctgcctcaagaaggtgtccgag
ggcgtggagcagtttgaagatatttggcagaagctccacaatgcagccaacgcgaaccag
aaagaaaagtatgaggctgatctaaagaaggagattaagaagcttcaacggctgagggac
cagatcaagacttgggtagcatccaatgagatcaaggacaagaggcagcttatagacaac
cgcaagctcattgagacgcaaatggaacggttcaaagttgtggagcgagagaccaagaca
aaagcctatagcaaggagggcctgggcctggcacagaaggtggaccctgcccagaaggaa
aaggaggaggtcggccagtggctcacgaataccatcgacaccctaaacatgcaggtggac
cagtttgagagtgaagtggagtcactgtcggtgcaaacacgcaagaagaagggcgacaag
gatcagaagcaggaccggatcgagggcctgaagcggcatatcgagaagcaccgctaccac
gtgcgcatgctggagaccatcctgcgcatgctggacaacgactccatcctcgtggacgcc
atccgcaagatcaaggacgatgtcgagtactacgtggactcgtcccaggaccccgacttc
gaggagaatgagttcctctacgacgacctggacctcgaggacattccacaggcgctggtc
gccacctccccgcccagccacagtcacatggaggatgagatcttcaaccagtcaagcagc
acgcccacttcgaccacctccagctcgcccatcccgcccagcccggccaactgcaccacg
gaaaactctgaagatgacaagaagaggggacgctcgacggatagtgaaatcagccagtct
ccagccaaaaacggctccaagcctgtccacagcagccagcaccctcagtccccagctgtg
ccgccaagctacccctccggccccccgcccgccgcctctgccctgagcaccgcccctggc
aacaacggggcccctgccccggcagcacccccaagcgccctgggcgccaaggccagccca
gctcccagccacagctcgggcacgcccgccccctacgcccaggctgtggccccgccagct
cccagtgggcccagccccgcgcagccccggccccccagcgtgcagcccggcggaggcgga
ggcggaggcaagcagaacggcgccaccagttacagctcagtagtggcagacagcccggca
gaggtggctctcagcagcggcgggggcagcagtgccaacagccaggccctgggcccccag
tctggcccccacaacccacctcccagcacctcgaaggaacccaatgcgacagccccaacg
ggggctgggggcgtggccccaggctcagggaacaactcggggggacccagtctcctggtg
ccactacctgtgaaccctcccagctccccgacacccagcttcagcgaggccaaggcggcc
ggcgccctgctcaatggacctccacagttcagcgctgccccggagatcaaggcccctgag
cctctgagctctttgaagtccatggcggagcgggcagccatcagctccggcatcgaggac
cccgtccccacgctgcacctgactgagcgagacatcatcctgagcagcacgtcggctccc
ccggcctcggcccagccggccctgcagctgtcggaggtgaacataccgctgtcgctgggt
gtgtgtcccctggggcctgtgcccctcaccaaggagcagctctaccagcaggccatggaa
gaggccgcctggcaccacatgccccacccctcagactctgagcgtatccggcagtacctc
ccccggaacccctgcccgacgcccccctaccaccaccagatgccgcccccgcactcggac
actgtggagttctaccagcggctgtcgaccgagacgcttttcttcatcttctactatctg
gagggcactaaggcacagtacttggcagccaaggccctaaagaagcagtcgtggcgattc
cacaccaagtacatgatgtggttccagaggcacgaggagcccaagaccatcactgacgag
ttcgagcagggcacctacatctactttgactacgagaagtggggccagcggaagaaggaa
ggcttcacctttgagtaccgctacctggaggaccgggacctccagtga
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integrated database retrieval system
