Phocoena sinus (vaquita): 116743864
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Entry
116743864 CDS
T07759
Symbol
ARID1A
Name
(RefSeq) AT-rich interactive domain-containing protein 1A isoform X1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu03082
ATP-dependent chromatin remodeling
psiu04714
Thermogenesis
psiu05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
116743864 (ARID1A)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
116743864 (ARID1A)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
116743864 (ARID1A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
psiu03000
]
116743864 (ARID1A)
03021 Transcription machinery [BR:
psiu03021
]
116743864 (ARID1A)
03036 Chromosome and associated proteins [BR:
psiu03036
]
116743864 (ARID1A)
Transcription factors [BR:
psiu03000
]
Eukaryotic type
Helix-turn-helix
ARID
116743864 (ARID1A)
Transcription machinery [BR:
psiu03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
116743864 (ARID1A)
Chromosome and associated proteins [BR:
psiu03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
116743864 (ARID1A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
116743864
NCBI-ProteinID:
XP_032468847
Ensembl:
ENSPSNG00000002958
UniProt:
A0A8C9B2L7
LinkDB
All DBs
Position
1:21011517..21081069
Genome browser
AA seq
2285 aa
AA seq
DB search
MAAQVAPAAASSLGNPPPPPSELKKAEQQQREEAGGEAAAVAAERGEMKAAAGQESEGPA
VGPPQPLGKELQDGAESNGGGGGGGAGGGGGPGAEPDLKNSNGNAGPRPALNNNLTEPPG
GGGGGSSDGVGAPPHSAAAALPPPAYGFGQPYGRSPSAVAAAAAAVFHQQHGGQQSPGLA
ALQSGGGGGGLEPYAGPQQNSHDHGFPNHQYNSYYPNRSAYPPPPQAYALSSPRGGTPGS
GAAAAAGSKPPPSSSASASSSSSSFAQQRFGAMGGGGPTAAGGGTPQPTATPTLNQLLTS
PSSARGYQGYPGGDYGGGPQDGGAGKGPADMASQCWGAAAAAAAAAAAASGGAQQRSHHA
PMSPGSSGGGGQPLARTPQPSSPMDQMGKMRPQPYGGTNPYSQQQGPPSGPQQGHGYPGQ
PYGSQTPQRYPMTMQGRAQSTMGSLSYAQQIPPYGQPGPSGYGQQGQAPYYNQQSPHPQQ
QQQPYSQQPPSQTPHAQPSYQQQPQSQPPQLQSSQPPYSQQPSQPPHQQSPTPYPTQQST
TQQHPQSQPPYSQPQAQSPYQQPPPQQPASSTLSQQAAYPQPQSQQSQQTAYSQQRFPPP
QELSQDSFGSQASSAPSMTSSKGGQEDMNLSLQSRPSSLPDLSGSIDDLPMGTEGALSPG
VSTSGISSSQGEQSNPAQSPFSPHTSPHLPGIRGPSPSPVGSPASVAQSRSGPLSPAAVP
GNQMPPRPPSGQSDSIMHPSMNQSSIAQDRGYMQRNPQMPQYSSPQPGSALSPRQPSGGQ
MHTGMGSYQQNSMGSYGPQGSQYGPQGGYPRQPNYNALPNANYPSAGMAGSMNPMGAGGQ
MHGQPGIPPYGTLPPGRMSHASMGNRPYGPNMANMPPQVGSGMCPPPGGMNRKTQETAVA
MHVAANSIQNRPPGYPNMNQGGIMGTGPPYGQGINSMAGMINPQGPPYPMGGTMANNSAG
MAASPEMMGLGDVKLTPATKMNNKADGTPKTESKSKKSSSSTTTNEKITKLYELGGEPER
KMWVDRYLAFTEEKAMGMTNLPAVGRKPLDLYRLYVSVKEIGGLTQVNKNKKWRELATNL
NVGTSSSAASSLKKQYIQCLYAFECKIERGEDPPPDIFAAADSKKSQPKIQPPSPAGSGS
MQGPQTPQSTSSSMAEGGDLKPPTPASTPHSQIPPLPGMSRSNSVGIQDAFPDGSDPTFQ
KRNSMTPNPGYQPSMNTSDMMGRMSYEPNKDPYGSMRKAPGSDPFMSSGQGPNGGMGDPY
SRAAGPGLGNVAMGPRQHYPYGGPYDRVRTEPGIGPEGNMGTAAPQPNLMPSNPDSGMYS
PSRYPAQPQPQPQPQQQRHDSYGNQFSAQGTPSSSPFPSQQTTMYQQQQQNYKRPMDGTY
GPPAKRHEGEMYSVPYSTGQGQPQQQQLPPAQPQPASQQQAAQPSPQQDVYNQYGNAYPA
TAATERRPAGGPQNQFPFQFGRDRVSAPPGSSAQQNMPPQMMGGPIQASAEVAQQGTMWQ
GRNDMTYSYANRQSTGSAPQGAAYHGVNRTDEMLHTDQRANHEGPWPSHGTRQPPYGPSA
PVPPMTRPPPSNYQPPPSMQNHIPQVSSPAPLPRPMENRTSPSKSPFLHSGMKMQKAGPP
VPASHIAAAPVQPPMIRRDITFPPGSVEATQPVLKQRRRLTMKDIGTPEAWRVMMSLKSG
LLAESTWALDTINILLYDDNSIMTFNLSQLPGLLELLVEYFRRCLIEIFGILKEYEVGDP
GQRTLLDPGRFSKASSPAPMEGVEEEDLLGPKLEEEEEEDVIENDEEMAFAGKDKAASEN
SEEKLISKFDRLPVKIVQKNDPFVVDCSDKLGRVQEFDSGLLHWRIGGGDTTEHIQTHFE
SKTELLPSRPHVPCPPVTRKYVTAVEGTPGTTEQEGPPTDGPPEKRITATMDDMLSTRSS
TLTEEGAKSVEATKESSKFPFGISPAQSHRNIKILEDEPHSKDETPLCTLLDWQDSLAKR
CVCVSNTIRSLSFVPGNDFEMSKHPGLLLILGKLILLHHKHPERKQAPLTYEKEEEQDQG
VSCNKVEWWWDCLEMLRENTLVTLANISGQLDLSPYPESICLPVLDGLLHWAVCPSAEAQ
DPFSTLGPNAVLSPQRLVLETLSKLSIQDNNVDLILATPPFSRLEKLYSTMVRFLSDRKN
PVCREMAVVLLANLAQGDSLAARAIAVQKGSIGNLLGFLEDSLAATQFQQSQASLLHMQN
PPFEPTSVDMMRRAARALLALAKVDENHSEFTLYESRLLDISVSPLMNSLVSQVICDVLF
LIGQS
NT seq
6858 nt
NT seq
+upstream
nt +downstream
nt
atggccgcgcaggtcgcccccgccgccgccagcagcctgggcaacccgccgccgccgccc
tcggagctgaagaaagcggagcagcagcagcgggaggaggcggggggcgaggcggcggcg
gtagcggccgagcgcggggaaatgaaggcagccgccgggcaggaaagcgagggccccgcc
gtggggccgccgcagccactgggaaaagagctgcaggacggggctgagagcaatgggggt
ggcggcggcggcggagccggcggcggtggcgggcccggcgcggagccggacctgaagaac
tcgaacgggaacgcgggccctaggcccgccctgaacaataacctcacggagccgcccggc
ggcggtggtggcggcagcagcgacggggtgggggcgcctcctcactcagccgcggccgcc
ttgccgcccccagcctacggcttcgggcaaccctacggccggagcccgtctgccgtcgcc
gccgcggcggccgccgtcttccaccaacaacatggcggacaacaaagccctggcctggca
gcgctgcagagcggcggcggcggcgggggcctggagccctacgcggggccccagcagaac
tcgcacgaccacggcttccccaaccaccagtacaactcctactaccccaaccgcagcgcc
taccccccgcccccccaggcctacgcgctgagctccccgagaggtggcactccggggtcc
ggcgcggcggcggccgccggctccaagccgcctccctcctccagcgcctccgcctcctcg
tcgtcttcgtccttcgctcagcagcgcttcggggccatggggggaggcggccccacagcg
gccggagggggaaccccccagcccaccgccacccccaccctcaaccaactgctcacgtcg
cccagctcggcccggggctaccagggctaccccgggggcgactacggcggcgggccccag
gacgggggcgctggcaagggcccggcggacatggcctcgcagtgctggggggctgctgct
gcggcggcggcggcggcggcggccgcctcgggaggagcccaacaaaggagccaccacgcg
cccatgagccccgggagcagcggcggcgggggtcagccgctcgcccggaccccgcagcca
tccagtccaatggatcagatgggcaagatgagacctcagccatatggcgggactaaccca
tactcgcaacaacagggacctccatcaggaccgcagcaaggacatgggtacccagggcag
ccatatgggtcccagaccccgcagcggtacccgatgaccatgcagggccgagcgcagagt
accatgggcagcctctcttatgcacagcagattccaccttatggacagccaggccccagc
gggtatggtcagcagggccaggctccatattacaaccagcaaagccctcacccccagcag
cagcagcagccctactcccagcagccaccatcccagacccctcacgcccagccttcatat
cagcagcagcctcagtctcagccaccgcagctccagtcctctcagcctccgtattcccag
cagccatcccagcccccccatcagcagtccccaaccccgtaccccacccagcagtctacc
acccagcagcacccccagagccagcccccctactcacagccgcaggcacagtctccttac
cagcagccgccacctcagcagccagcatcctcgacgctttcccagcaggctgcgtaccct
cagccccagtctcagcagtcacagcaaactgcctattctcagcagcgcttccctccacca
caggagttatctcaagattcatttgggtctcaggcgtcctcagccccctcaatgacctcc
agtaagggagggcaagaagatatgaacctgagtcttcagtcaagaccttcaagcttgcct
gatctgtctggttcaatagacgatctccccatggggacagaaggagctctgagccctgga
gtgagcacatcagggatttcaagcagccaaggggagcagagtaatccagctcagtctcct
ttttctccccatacctcccctcacctgcctggcatccgaggcccctccccgtccccagtt
ggctctcctgccagtgttgctcagtctcgctcaggaccactctcgcctgctgcagtgcca
ggcaaccagatgccacctcggccacccagtggccagtcggacagcatcatgcatccttct
atgaaccaatcaagcattgcccaagatcgaggttacatgcagaggaatccccagatgccc
cagtacagttccccccagcccgggtcggccttatctccacgtcagccttctggaggacag
atgcacacaggcatgggctcctaccagcagaactccatggggagctatggtccccaggga
agtcagtacggcccacagggaggctaccccaggcagccaaactataatgccttgcccaat
gctaactaccccagtgcaggcatggctggaagcatgaaccctatgggtgctggaggtcag
atgcatgggcagcctggcatcccaccttatggcacactccctccagggagaatgagtcat
gcctccatgggcaaccggccttatggccctaacatggccaatatgccacctcaggttggg
tcagggatgtgtcccccaccagggggcatgaaccggaaaactcaagaaactgctgtcgcc
atgcacgttgctgccaactctatccagaacaggccaccaggctaccccaatatgaatcaa
gggggcataatgggaactggacctccctatggacaagggattaatagtatggctggcatg
atcaaccctcagggacccccatatccgatgggtggaaccatggctaacaattcagcaggg
atggcagccagcccagagatgatgggtcttggggatgtcaagttaactccagccaccaaa
atgaacaacaaggcagatgggacacccaagacggaatctaaatccaagaaatccagttct
tctactacaaccaatgagaagatcaccaagttgtatgagctgggtggtgagcctgagagg
aagatgtgggtggaccgttatctggccttcacggaggagaaggccatgggcatgacaaat
ctgcctgctgtgggtaggaaacctctggacctgtaccgcctctatgtgtctgtgaaggaa
attggtggattgactcaggtcaacaagaacaaaaaatggcgggaacttgcgaccaacctc
aatgtcggcacctcaagcagtgctgccagctccttgaaaaagcagtacatccaatgtctc
tatgcctttgagtgcaagatcgaacggggagaagaccctcccccagacatctttgcagct
gctgattccaagaagtcccagcccaagatccagcctccctctcctgcgggatcagggtca
atgcaggggccacagacacctcagtcaaccagcagttccatggcagaagggggagacctg
aagccaccaactccagcatccacaccacacagccagatcccccccttgccaggcatgagc
aggagcaattcggtcgggatccaggacgcctttcctgacggaagtgaccccacattccaa
aagcggaattccatgactccaaaccctgggtaccagcccagtatgaatacctctgacatg
atggggcgcatgtcctacgagccaaataaggatccttatggcagcatgaggaaagctccg
gggagtgatcccttcatgtcctcaggtcagggccctaacggcgggatgggggacccctac
agtcgagctgccggccctgggctgggaaatgtggcgatgggaccgcgacagcactatccc
tatggaggtccttatgacagagtgaggacggagcccggaataggacccgagggaaacatg
ggcactgcagccccacagccgaatctcatgccttccaacccagactcggggatgtattct
cctagccgttaccccgcacagccgcagccgcagccgcagccgcagcagcaacgacatgat
tcctatggcaatcagttctccgctcaaggcaccccttccagcagccccttccccagccag
cagaccacgatgtatcagcagcagcagcagaattacaagcggccgatggatggcacatac
ggccctcctgccaagaggcacgaaggggagatgtacagtgtgccatacagcacggggcag
gggcagccccagcagcagcagttgcccccagcccagccccagcctgccagccagcaacaa
gctgctcagccttcccctcagcaagatgtgtacaaccagtacggcaatgcctatcctgcc
actgctgctactgagcgccgaccggcaggcggcccccagaaccagtttccattccagttt
ggccgagaccgtgtctcagcaccccctggctccagtgcccaacagaacatgccaccgcag
atgatgggcggccccatacaggcatcggctgaggttgctcagcaaggcaccatgtggcag
gggcgtaatgacatgacctacagttacgccaacaggcagagcacgggctctgccccgcaa
ggtgctgcctatcatggcgtgaaccgaacagatgaaatgctgcacacggatcagagagcc
aaccatgaaggcccatggccttcccatggcacacgccagcccccatatggtccttctgcc
cccgtgccccccatgacaaggccccctccatccaactaccagcccccaccgagcatgcag
aatcacattcctcaggtatccagccctgctcccctgccccggccaatggagaaccgcacc
tctcctagcaagtctccgttcctgcactccgggatgaagatgcagaaggcgggtcccccg
gtacctgcctcacacatagcagctgcccctgtgcagccccctatgattcggcgggacatc
accttcccacctggctctgtcgaagccacacagcctgtgttgaagcagaggaggcggctc
acgatgaaagacatcggaaccccggaggcatggcgggtaatgatgtccctcaagtctggg
ctgctggcagagagcacgtgggcattagacaccattaacatcctgctgtatgatgacaac
agcatcatgactttcaacctcagtcagctcccagggttgctagagctccttgtggaatat
ttccgacgttgcctgattgagatctttggcattttaaaggagtatgaggtgggtgaccca
ggacagagaacactactggaccctgggagattcagcaaagcgtctagtccagctcctatg
gagggggtggaggaggaagaccttctaggtcccaaactagaggaggaagaagaggaggac
gtaattgaaaatgatgaggagatggcctttgcgggcaaggacaaagccgcctcagagaat
agtgaggagaaactgattagtaagtttgacaggcttccagtaaagatcgtgcaaaagaat
gacccgttcgtggtggactgctcagataagcttgggcgcgtgcaggagttcgacagtggc
ttgctgcactggcggattggtgggggggacaccactgagcatatccagacccactttgag
agcaaaacagagctgctgccttcccggcctcatgtaccctgcccaccagtcactcggaag
tatgtcacagcagtagagggtacaccagggacaacagagcaggagggccccccgactgat
ggccctccagaaaaacggatcacagccactatggatgacatgttgtccacccggtctagc
acactgaccgaggagggagctaagagtgtagaggccaccaaggaaagcagcaagtttcca
tttggcatcagcccagcacagagccatcggaacatcaagatcctagaggatgaaccccac
agtaaagatgagaccccactgtgtacccttctggactggcaggattcccttgccaaacgc
tgcgtctgtgtctccaataccatccgaagtctgtcatttgtgccaggcaacgactttgag
atgtccaagcacccggggctgctgctgatcctgggcaagctgatccttctgcaccacaag
cacccggaacggaagcaggcgccactgacttacgagaaggaggaggagcaggaccaaggg
gtgagctgcaacaaagtggagtggtggtgggactgcttggagatgcttcgggaaaacacc
ttggtcacgctcgccaacatttcggggcagttggacctctccccataccccgagagcatt
tgcctgcctgtcctggatggactcctacactgggcagtctgcccttcagctgaagcccag
gaccccttctccaccctgggccccaacgccgtcctctccccacagagactggtcttggaa
accctcagcaaactcagcatccaggacaacaatgtggacctgatcctggccacacccccc
ttcagccgcctggagaagttgtacagcaccatggtgcgcttcctcagtgaccggaagaac
ccggtgtgccgggagatggctgtggtactgctagccaacctggcgcagggtgacagcctg
gcggcccgtgccattgcagtgcagaaaggcagcatcggcaacctcctgggcttcctggag
gatagccttgctgccacacagttccagcagagccaggccagcctgctccacatgcagaac
ccgccctttgagccaactagtgtggacatgatgcgacgggctgcccgtgcgctgctggcc
ctggccaaggtggacgagaaccactcggagttcacgctgtatgagtcacggctgttggac
atctcggtatcaccgttgatgaactcattggtttcacaagtcatttgcgatgtactgttt
ttgattggccagtcatga
DBGET
integrated database retrieval system
