Phocoena sinus (vaquita): 116744048
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Entry
116744048 CDS
T07759
Symbol
SYMPK
Name
(RefSeq) LOW QUALITY PROTEIN: symplekin
KO
K06100
symplekin
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu03015
mRNA surveillance pathway
psiu04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
116744048 (SYMPK)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
116744048 (SYMPK)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psiu03021
]
116744048 (SYMPK)
03019 Messenger RNA biogenesis [BR:
psiu03019
]
116744048 (SYMPK)
Transcription machinery [BR:
psiu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
116744048 (SYMPK)
Messenger RNA biogenesis [BR:
psiu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
116744048 (SYMPK)
U7-dependent histone pre-mRNA processing factors
116744048 (SYMPK)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
PDS5
Cnd1
Motif
Other DBs
NCBI-GeneID:
116744048
NCBI-ProteinID:
XP_032469224
Ensembl:
ENSPSNG00000006567
LinkDB
All DBs
Position
19:9123458..9159466
Genome browser
AA seq
1275 aa
AA seq
DB search
MAGSSGDSVTRRSVASQFFTQEEGPGIDGMTTSERVVDLLNQAALITNDSKITVLKQVQE
LIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLLKLIANLNMLLRD
ENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIR
THAIKFVEGLIVTLSPRMADSEVPRRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLL
KFMVHPAISSINLTTALGSLANIARQRPMFMSEVIQAYETLHANLPPTLAKSQVSSVRKN
LKLHLLSVLKHPASLEFQAQITTLLVDLGTPQAEIARNMPSGKDARKRPRDDSDSTLKKM
KLEPNLGEDDEDKDLEPGPSATSKASAQISGQSDTDITAEFLQPLLTPDNVANLVLISMV
YLPEAMPASFQAIYTPVESAGTEAQIKHLARLMATQMTAAGLGPGVEQTKQCKEEPKEEK
VVKPESVLIKRRLSAQGQAISVVGSLSSMSTLEEEAPQAKRRPEPIIPVTQPRLAGAGGR
KKIFRLSDVLKPLTDAQVEAMKLGAVKRILRAEKAVACSGAAQVRIKILASWXRQFDSGL
KAEVLSFILEDVRARLDLAFAWLYQEYNTYLAAGATGTLDXYEDCLIRLLSGLQEKPDQK
DGIFTKVVLEAPLITESALEVIRKYCEDESRTYLGMSTLRDLIFKRPSRQFQYLHVLLDL
SSHEKDKVRSQALLFIKRMYEKEQLREYVEKFALNYLQLLVHPNPPSVLFGADKDTEVAA
PWTEETVKQCLYLYLALLPQNHKLIHELAAVYTEAIADIKRTVLRVIEQPIRGWAXTRLS
SLLLVENCPNGAETLVTRCLHSLRTKSHPPPELVKRVRDLYHKRLPDVRFLIPVLNGLEK
KEVIQALPKLIKLNPIVVKEVFNRLLGTQHGEGNSALSPLNPGELLIALHNIDSSKCDMK
SIIKATNLCFAERNVYTSEVLAVVMQQLMEQSPLPMLLMRTVIQSLTMYPRLGGFVMNIL
SRLIMKQVWKYPKVWEGFIKCCQRTKPQSFQVILQLPPQQLGAVFDKCPELREPLLAHVR
SFTPHQQAHIPNSIMTILEASGKQEPETKEAPAGPLEEDDLEPLALAPPPAPRPPQDLIG
LRLAQEKALKRQLEEEQKLKPGGVGAPSSSSSSLSSSSARPGPPQPEEAIDFREEGPECE
TPAIFISMDDDSGLTEAALLDSSLEGPLPKEAAAGGLISKEERSPQTLTLAGEDTVKTPS
PTAEEAGEPETKGNS
NT seq
3828 nt
NT seq
+upstream
nt +downstream
nt
atggcaggcagcagtggggacagcgtcactcgccggagcgtggcatcacagtttttcaca
caagaggaggggccgggcattgatggcatgaccacatcagagagagtggtggatctcctc
aaccaggcagcactgatcaccaatgattcaaagatcacagtgctcaaacaggtccaggag
ctgatcatcaacaaagatcccacactactggacaacttcctggatgagatcatcgctttc
caagcagacaagtccattgaagtgcgcaagtttgtcatcggcttcatcgaggaggcatgc
aagcgagacattgagttactgctgaaactgatcgcgaatctcaacatgctcttgagagat
gagaatgtgaatgtggtgaagaaggccatcctcaccatgacccagctctacaaggtggcc
ctgcagtggatggtgaagtcacgggtgatcagcgagctccaggaagcctgctgggatatg
gtgtctgccatggctggggacatcatcctgctgttggactctgacaatgacggcatccgt
acccacgccatcaagtttgtggagggcctcattgtcaccctgtcgccccgcatggccgac
tcggaggtgccccgacgccaggagcacgacatcagcctggaccgcatccctcgtgaccat
ccctatatccaatacaatgtgctgtgggaagaaggcaaggcagccttagagcagttgctc
aagttcatggtgcaccccgctatctcctccatcaacctgaccacagccctgggctccctc
gctaatattgcccgccagaggcccatgttcatgtctgaggtgattcaagcctatgaaacc
ctgcacgccaacctgcccccaacgctggccaagtctcaggtgagcagcgtgcgtaagaac
ctcaagttgcacctgttgagtgtgctgaagcacccagcctccttggagttccaggctcag
atcaccaccctgctggtagacctgggcacacctcaggctgagatcgcccgcaacatgccc
agcggcaaggatgcccgcaagcggccccgagacgactcagattccaccctcaagaagatg
aagcttgagcccaacctgggggaagacgacgaggacaaggacttggagccaggcccctca
gcgacctcgaaggcctcagcccagatctcaggccagtcagacacagatatcacagccgag
ttcctacagcctctgctgacacctgacaatgtggccaatctggtcctcatcagcatggtg
tacctgcctgaggccatgcccgcctccttccaagccatctacaccccagtggagtcagca
ggcactgaagcccagatcaagcacctggctcggctcatggccacacagatgacggccgca
ggactggggccaggcgtggagcagaccaaacagtgtaaggaggagcccaaggaggagaaa
gtggtgaagccggagagtgtcctgatcaagcggcgcctgtcagctcagggtcaggccatc
tccgtagtgggctccctgagctccatgtccactctggaggaggaagcgccccaggccaag
aggaggccagagcccatcatccccgtcacgcagccccggctggcaggcgccggtgggcgc
aagaaaatcttccgtctgagtgatgtgctgaagcccctgaccgacgcccaggttgaggcc
atgaagctgggcgctgtgaagcggatcctgcgggctgagaaggccgtggcctgcagcggg
gcagcccaggtgcgcataaagatcctggccagctggtgacgtcagttcgactcgggcctg
aaggccgaggtcctgtccttcatcctggaagacgtgcgggcccgcctggacctggccttt
gcctggctctaccaggagtacaacacctacctagcagctggtgccacaggcaccctagac
nagtatgaggactgcctcatccgcctgctctccggccttcaggagaagccagaccagaag
gatgggatcttcaccaaggttgtactggaggcgccgctgatcactgagagtgccctggag
gtgattcgcaagtactgtgaggatgagagtcgcacctatctgggcatgtccactcttcga
gacctgatcttcaagcgcccgtcccgccagttccagtacctgcatgttctgctagacctc
agctcccatgagaaggacaaggtgcgttcccaggccttgctattcatcaagcgcatgtac
gagaaggaacagctacgagagtatgtggagaagtttgccctcaattacctacagctcttg
gtccaccccaacccgccatctgtgctctttggagccgacaaggacacagaggtggcagcg
ccctggactgaggagacagtaaagcagtgtttgtacctctacctggccctcctgcctcag
aaccacaagctgatccatgagctggcagccgtgtatactgaggccatcgctgacatcaag
aggacagtgctgagggtcatcgaacagccgatccgaggatgggcatgaactcgcctgagc
tcgctcctgctggtggaaaactgtcccaatggggcagagacactggtcacacgttgtctg
cacagcctcaggacaaagtcccaccctcccccagagctggtgaagcgggtccgggatctc
taccacaagcgactgcccgacgtccgcttcctcatccctgtgctcaatgggctggaaaag
aaggaagtgatccaggccctgccaaagctcatcaaactcaaccccatagtggtgaaggag
gtcttcaaccgcctgctgggcacccagcacggtgaagggaactcagccttgtcccccctg
aaccctggagagcttctcatcgcattacacaacatcgactcctcaaagtgtgacatgaag
tccatcatcaaagccaccaacctgtgctttgcggagcggaacgtgtacacgtcggaggtg
ctggccgtggtgatgcagcagttgatggagcagagtcccctgcccatgctgctcatgagg
accgtcatccagtccctgaccatgtacccccgcctggggggcttcgtcatgaacatcctt
tcccgcctcatcatgaaacaggtgtggaagtatcccaaggtgtgggagggcttcatcaaa
tgctgtcaacgcaccaagccccagagcttccaggtcatcctgcagctcccaccccagcag
ctgggtgccgtctttgacaagtgcccggagctccgggagcccctgctggcccacgtccgt
tccttcaccccccaccagcaagcacacatccccaactccatcatgaccatcctggaggcc
agcggcaagcaagagccagagactaaggaagcacctgccgggcccctggaagaggatgac
ttagagcccctggccctggcaccgcccccggccccccgcccccctcaagacctcatcggc
ttgcggctggcccaggagaaggccttaaagcggcagctggaggaggaacagaagctgaag
cctgggggagtgggagccccctcctcgtcctcctcgtcgttgtcctcttcctcggcccgg
ccaggccctccccagccggaggaagccattgatttccgggaggaggggcctgagtgtgag
accccggccatcttcatcagcatggatgatgactcggggctgactgaagctgcactgctg
gactctagtcttgagggacccctacctaaggaagctgcagcgggcggattgatttcaaag
gaagagcggagcccccagaccctcacccttgccggagaagacaccgtgaagactcccagc
cccactgctgaggaagccggggaacccgagaccaaggggaacagctga
DBGET
integrated database retrieval system
