Phocoena sinus (vaquita): 116744387
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Entry
116744387 CDS
T07759
Symbol
EDC4
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116744387 (EDC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psiu03019
]
116744387 (EDC4)
Messenger RNA biogenesis [BR:
psiu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
116744387 (EDC4)
mRNA degradation factors
5'-3' decay
Decapping complex
116744387 (EDC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
Beta-prop_EDC4L
DUF445
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_TEP1_2nd
Beta-prop_HPS5
WDR55
Motif
Other DBs
NCBI-GeneID:
116744387
NCBI-ProteinID:
XP_032469932
Ensembl:
ENSPSNG00000021129
LinkDB
All DBs
Position
19:40641371..40652574
Genome browser
AA seq
1403 aa
AA seq
DB search
MASSCASIDIEDATQHLRDILKLDRPAGGPSAESQRPSNAYNGDLNGLLVPDPLCSGDGT
STNKPGLRAMPPINLQEKQVICLLGDDSSTCIGILAKEVEIVASSDSSISSKARGSNKVK
IQPVAKYDWEQKYYYGNLIAVSNSFLAYAIRAANNGSAMVRVISVSTSERTLLKGFTGSV
ADLAFAHLNSPQLACLDEAGNLFVWRLALVNGKIQEEILVHIRQPEGTPLNHFRRIIWCP
FIPEESEDCCEEGSPTVALLHEDRAEVWDLDMLRSNHSTWPVDVSQIKQGFIVVKGHSTC
LSEGALSPDGTVLATASHDGFVKFWQIYIEGQDEPRCLHEWKPHDGRPLSCLLFCDNHKK
QDPEVPFWRFLITGADQNRELKMWCTVSWTCLQTIRFSPDIFSSVSVPPSLKVCLDLSAE
YLILSDVQRKVLYVMELLQNQEEGRACFSSISEFLLTHPVLSFGIQVVSRCRLRHTEVLP
AEEENDSLGADGTHGAGAMESAAGVLIKLFCVHTKALQDVQIRFQPQLNPDVVVPLPTHP
AHEDFVAAFPTAFGESRPELASEGLGSATHGSQSDLRRIVELPAPADFLSLSSETKPKLM
TPDAFMTPSTSLQQIAASPSSSSSSSSSSSLTTVSAMSSTSAVDPSLPSRPPEELTLSPK
LQLDGGLTMSSSSSLQASPRSLLPGLLPSPADKLPPKGPGQVPTAASTLSLELQEVEPLG
LPQASPSRTRSPDVISSASTALSQDIPEIASEALSRGFGSSAPEGLEPDSMASAASALHL
LSPRPRPGPELGPQLSLDGGPGDGDRHSTPSLLEAALTQEATAPDSQVWPTAPDITRETC
SSLAESPRNGLQEKHKSLAFHRPPYHLLQQHDSQDASAEQSDHDDEVASLASAAGGFGTK
VPTPRLPAKDWKTKGSPRASPKLKRKGKKDDGDSSVGSRLTEHQVAEAPEDWPALIWQQQ
RELAQLRHSQEELLQRLCTQLEGLQSTVMGHVERALESRHEQEQRRLERALAEGQQRGGQ
LQEQLTQQLSQALSSAVAGRLERSIRDEIKKTVPPCVSRSLEPVAGQLSNSVATKLTAVE
GSMKENISKLLKSKNLTDAIARAAADTLQGPMQAAYREAFQSVVLPAFEKSCQAMFQQIN
DSFRLGTQEYLQQLESHMKSRKAREQEAREPMLAQLRGLVSTLQGATEQMAATVSSSVRA
EVQHQLHVAVGSLQEAILAQVQRIVKGEVSVALKEQQAAVTSSIMQAMRSAAGTPVPATH
LDCQAQQAHILQLLQQGHLNQAFQQALTAADLNLVLYVCETVDPGQVFGQPPCPLSQPVL
LSLIQQLASDLGTRTDLKLSYLEEAVMHLDHSDPITRDHMGSVMAQVRQKLFQFLQAEPH
NSLGKAARRLSLMLHGLMTPSLP
NT seq
4212 nt
NT seq
+upstream
nt +downstream
nt
atggcctcctcctgcgcgagcatcgacatcgaggacgccacgcagcacctgcgggacatc
ctcaagctggaccggcccgcggggggtcccagtgcagagagccagcgaccatctaatgcc
tacaatggagatctcaatgggctcttggtcccagaccccctctgctcaggtgatggtact
tcaacaaacaagcctggtctccgagccatgcctcctattaacctgcaggaaaagcaggtc
atctgcctcttaggagacgacagttccacctgcatcgggattttggccaaggaggtggag
attgtggccagcagtgactctagcatctcgagcaaggcacgggggagcaacaaggtgaaa
atccagcccgtcgccaagtatgactgggagcagaaatactactatggcaacctgattgct
gtgtccaactctttcttggcctatgctattcgggctgccaacaacggctcagcgatggta
cgggtgatcagtgtcagcacttcagagaggaccctgctcaaaggcttcacaggcagtgtg
gctgatctggcctttgcacacctcaattccccacagctggcctgcctggatgaggcaggc
aacctgtttgtgtggcgcttggccctggttaatggcaaaattcaagaagagatcttggtc
catatccgacagccagagggcactccactgaatcacttccgcaggatcatctggtgcccc
ttcatccccgaagagagtgaggactgctgtgaggagggcagcccaacggtggccctgttg
catgaggaccgggctgaggtgtgggacctggacatgctccgctccaaccacagcacctgg
cccgtggatgtcagccagatcaagcagggcttcatcgtggtaaaaggccacagcacatgc
ctaagtgaaggggccctctcacctgatgggactgtcctggctaccgcaagtcatgatggc
ttcgtcaagttctggcagatttacattgaggggcaggatgagccaaggtgtttgcacgag
tggaagcctcacgatgggaggcccctctcctgcctcctgttctgtgacaaccacaagaaa
caggatcctgaggtccccttctggaggttccttattactggtgctgaccagaatcgggag
ctgaagatgtggtgcacggtgtcctggacctgcctgcagaccattcgcttctccccagat
atcttcagctcagtgagtgtgccccccagcctcaaggtttgcctggacctctcagcagaa
tacttgatactcagcgatgtgcaacggaaggtcctctatgtgatggaactgctgcagaac
caggaggagggccgtgcctgcttcagctccatctctgagttcctgctcacccaccctgtg
ctgagcttcggtatccaggttgtgagtcgctgccggctgcggcacactgaggtgctgcca
gccgaagaggagaatgacagcctaggggctgatgggacccacggagctggtgccatggag
tctgcagctggtgtgctcatcaagctcttttgtgtgcacactaaagcattgcaagatgta
cagatccgcttccagccacagctgaaccctgacgtggtggtcccgctccctacacaccct
gcccatgaggactttgtggcagcttttcccacagcatttggagagtctcgaccagaactg
gcttctgagggcctgggatcggccactcacggctcccagtctgacctccgacgcatcgtg
gagctgcctgcacctgccgacttcctcagtctgagcagtgagaccaagcccaagctgatg
acacctgacgccttcatgacacctagcacctccctgcagcagatcgctgcatctcccagt
agcagcagcagcagcagcagcagttcctctcttacgacggtgtctgccatgagcagtact
tcggccgtggacccctccttgcccagcaggccacctgaggagctgaccttgagccccaag
ctacagctggatggcggtctgacaatgagcagcagcagcagcctgcaggcaagcccacgt
agcctcctgcctggcctgctcccaagtccggccgacaaattgcctcccaaagggcctggg
caggtgcctactgctgcctctacactatccctggagctgcaggaagtggagcccctgggg
ctaccccaggcgtcccccagccgcacccgctcccccgatgttatctcctcggcttccact
gctctgtcccaggatatccctgagatcgcatctgaggcgctgtcccgtggctttggctcc
tccgctccggagggcctggagccagacagtatggcctcagctgcttcagcactacacttg
ctgtctccacggccccggccgggacccgagcttggcccccagcttagcctggatggaggc
cctggggatggggatcggcatagtaccccttccctcctggaggcagccttgacccaggag
gccacggcccctgacagtcaggtctggcctacggcaccagacattactcgtgagacctgc
agcagcctggcagagagcccccggaatggcctccaggaaaagcacaagagcctggccttt
caccgaccaccttatcacctgctacagcaacacgacagtcaggacgccagtgccgagcaa
agcgaccatgatgatgaggtggccagcctagcctctgctgcagggggttttggcaccaaa
gttcccactccacgtcttcctgccaaggactggaagaccaaaggatcccctcgggcctca
cccaagctcaagcgaaagggcaaaaaggatgacggggattcgtccgtgggatcccggctc
acagagcaccaggtggcagaggcccctgaggactggccagcactaatttggcaacagcag
agagagctggcacagcttcggcacagccaagaagagctgctacagcgtctgtgcacccaa
cttgaaggcctgcagagcaccgtcatgggccacgtagaacgtgccctagagtcacggcac
gagcaggagcagcggcgactggagcgggcactggccgagggacagcagcgtggtgggcag
ctgcaggagcagctgacgcaacagctgtcccaagcgctatcttcagctgtggctgggcgg
ctggagcgcagcatacgggatgagatcaagaagacggttcctccgtgtgtgtctaggagt
ctggagcccgtggcaggccaattgagcaactcagtggccaccaaactcacagccgtggag
ggtagcatgaaagagaatatctccaagctgctgaagtccaagaacttaacagatgccatt
gcccgagcagccgcagacacgttacaggggccaatgcaggccgcctaccgtgaagccttc
cagagcgtggtactgcccgcctttgagaagagctgccaggccatgttccagcagattaat
gatagcttccgactgggcacgcaggaatacttgcagcagctggagagccacatgaagagc
cgaaaggcacgagaacaggaggcgcgggagcccatgctggcccagctgcggggcctggtc
agcacactgcagggagccacggagcagatggcggctaccgtgtccagcagcgttcgggct
gaggtgcagcaccagctgcacgtggctgtgggcagcctgcaagaggcaattttagcacag
gtgcagcgcattgttaagggtgaggtgagtgtggcactcaaggagcagcaggctgccgtc
acctctagcatcatgcaggccatgcgctcagccgctggcacacctgtccctgccacccac
ctcgactgccaagcccagcaagcccatatcctgcagctgctgcagcagggccacctcaat
caggccttccagcaggccctgacagctgccgacctgaacctggtgctgtacgtgtgtgaa
actgtagacccaggccaggtttttgggcagccaccttgccccctctcccagcctgtactc
ctttcactcatccagcaactggcctctgaccttggcactcgaactgacctcaagctcagc
tacctggaagaggctgtgatgcacctggaccacagtgaccccatcactcgggaccacatg
ggctccgtcatggcccaggtgcgccagaagctcttccagttcctgcaggcggagccacac
aactcacttggcaaagcggcccggcgtctcagcctcatgctgcacggccttatgaccccc
agcctcccttag
DBGET
integrated database retrieval system
