KEGG   Phocoena sinus (vaquita): 116744422
Entry
116744422         CDS       T07759                                 
Symbol
XRCC1
Name
(RefSeq) DNA repair protein XRCC1 isoform X1
  KO
K10803  DNA-repair protein XRCC1
Organism
psiu  Phocoena sinus (vaquita)
Pathway
psiu03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:psiu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    116744422 (XRCC1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:psiu03400]
    116744422 (XRCC1)
DNA repair and recombination proteins [BR:psiu03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Short Patch-BER factors
     116744422 (XRCC1)
SSDB
Motif
Pfam: XRCC1_N BRCT BRCT_2 PTCB-BRCT LIG3_BRCT
Other DBs
NCBI-GeneID: 116744422
NCBI-ProteinID: XP_032470070
Ensembl: ENSPSNG00000012900
LinkDB
Position
19:10753697..10776525
AA seq 628 aa
MPEIRLRHVVSCSSQDSTYCAENLLKADTYRKWRAAKAGEKTISVVLQLEKEEQIHSVHI
GNDGSAFVEVLVGSSAGGAGEQDYEVLLVTSSFMSPSESRSGSNSNRVRIFGPDKLVRAA
AEKRWDRVKIVCSQPYSKDAPYGLSFVRFHSPPDKEEAEASSQKVTKLGQFRVKEEDESA
SSLRPGALFFSRINKTPPVAASDPAGPSYAAATLQASSAASSASPASKTVGSTSKESPRG
KRKLDLSHEEKKTPSKPSTQPSPPTLKRPKLSAPTPTPATAPVPAAARGAAPGKPRGEGA
EPRAPRAGPQELGKILHGVVVVLSGFQNPFRSELRDKALELGAKYRPDWTPDSTHLICAF
ANTPKYSQVLGLGGRIVRKEWVLDCHRMRRRLPSRRYLMAGPDSSSEDEGGSHGGSSGDE
APKPPRKRLQTKAKPSQAAGPSSPQRPPTPEETKPPSPGPQEDTDTKGEQSEGQDNGAED
SGDTEDELRRVAEQKEQRPPSGEENGKDPYAGSTDENTDNEGPPESPNLPIPELPDFFQG
KHFFLYGEFPGDERRTLRRYVTAFNGELEDYMSDRVQFVITAQEWDPSFEEALMDNPSLV
FVRPRWIYSCNEKQKLLPHQLYGVVPQA
NT seq 1887 nt   +upstreamnt  +downstreamnt
atgccggagatccgcctccgccatgtggtatcctgcagtagccaggactcgacctactgt
gcagaaaaccttctcaaggcagacacttaccgaaagtggcgcgcagccaaggcaggcgag
aagaccatctctgtggtgctccagttagagaaggaagagcagatacacagcgtgcacatc
gggaacgacggctcggccttcgtggaggtgctggtgggcagctcagccggaggggccggg
gagcaggactacgaggtccttctggtcacttcgtctttcatgtccccttccgagagtcgc
agtggctcaaattccaaccgcgttcgcatttttgggcccgacaagttggtccgggcagca
gcagagaagcgctgggaccgcgtcaaaattgtctgcagccagccctacagcaaggatgcc
ccctatggcctgagttttgtaaggtttcacagccccccagacaaagaggaggccgaggcc
tcatcccagaaagtgaccaagctcggccagttccgcgtgaaggaggaggatgagagcgcc
agctcgctgagacccggggctctcttcttcagccggatcaacaagacccccccagtcgca
gccagtgacccagcaggacccagctatgcagctgctacactgcaggcctccagtgccgcc
tcctctgcctctccggcctccaagacagtaggcagcacctccaaggagtcccccagaggc
aagaggaagctggatttgagccacgaagaaaagaagacccccagcaaaccgtccacccag
ccctcaccacccaccctcaagagacccaaattgtcagctcccacccctaccccagccact
gcccctgtccctgccgcagcacggggggcggcgccagggaagccccgaggagaaggtgct
gagcccagggccccccgcgccggcccgcaggagctggggaagatccttcatggtgtggtg
gtggtactgagcggcttccagaaccccttccgctcggagctccgggacaaggccctggag
ctgggggccaagtatcgtccagactggactccagacagcacccatctcatctgcgccttt
gccaacacccccaagtacagccaggtcctaggcctcggaggccgaatcgtgcggaaagag
tgggtgctggactgtcaccgcatgcggcggcggctgccctctcggaggtacctcatggct
gggcccgactcgagcagcgaggacgaggggggctctcatggcggcagcagtggggatgaa
gcccccaagcctccccgaaagcgcctccagaccaaagccaagccctctcaggcagcagga
cctagctcaccccagagacccccaaccccagaagagaccaaaccaccctcaccagggccc
caggaagatactgacaccaagggggagcagtcagaaggacaggacaatggggcagaagat
tctggggacaccgaggatgagctgagaagggtggccgagcagaaggaacaaaggccgccc
tctggcgaggagaatggcaaggacccgtacgcaggatccacggatgagaacacggacaat
gaaggtcccccggagtctcccaatctgccgattcccgagctcccagactttttccagggc
aaacacttcttcctgtacggggagttcccgggggacgagcggcggacgctcagacgttat
gtcacagccttcaacggggagcttgaggactatatgagcgaccgggtacagtttgtgatc
acggcacaggagtgggaccccagctttgaggaggccttgatggacaacccctccttggtg
ttcgtccgtccccggtggatctacagttgcaacgagaagcagaagttacttccccaccag
ctctatggggtggtgccccaggcatga

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