Phocoena sinus (vaquita): 116744507
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Entry
116744507 CDS
T07759
Name
(RefSeq) LOW QUALITY PROTEIN: AFG3-like protein 1
KO
K08956
AFG3 family protein [EC:3.4.24.-]
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu05017
Spinocerebellar ataxia
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09160 Human Diseases
09164 Neurodegenerative disease
05017 Spinocerebellar ataxia
116744507
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
psiu01002
]
116744507
09182 Protein families: genetic information processing
03110 Chaperones and folding catalysts [BR:
psiu03110
]
116744507
Peptidases and inhibitors [BR:
psiu01002
]
Metallo peptidases
Family M41: FtsH endopeptidase family
116744507
Chaperones and folding catalysts [BR:
psiu03110
]
Other chaperones and cochaperones
AAA proteases
116744507
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_M41
AAA
AAA_lid_3
AAA_22
AAA_5
TIP49
AAA_16
AAA_33
AAA_2
RuvB_N
Mg_chelatase
AAA_28
IstB_IS21
Motif
Other DBs
NCBI-GeneID:
116744507
NCBI-ProteinID:
XP_032470229
LinkDB
All DBs
Position
19:59431631..59457273
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AA seq
686 aa
AA seq
DB search
MRQAPGGRLGVWRPMTYSPLNWMLQWLVAAAGSRAVAVPLTVLQGCGGGPRSGRTAGAGV
RALGTAQQVDRLEVVNKQFVRVITAPGTSSEKFVWFNIGSVHTFERNLETAHWELGIELA
EQTAVVYTTESDGSFLRRLVPTFLLIGSLLYVARRGPMGAGRGRRGGGLFTVGETTAKIV
KNNVGVRFADVAGCEEAKLEIMEFVNFLKNPKQYQDLGAKIPKGAMLTGPPGTGKTLLAK
ATAGEASVPFITVNGSEFLEMLVGVGPARTLRGLLFHVRDVYAMARRNAPCVLFIEEIDA
MGRNCGRGHFGGQSAQENXLNQLLVELDGFSSTTSVMVLAGTNRPDILDLALTRPGPFDR
QIYIGPPDIKGRSSIFRVHLRPLKLDESLSEDPLARKLAALTPGFTGADISNVCNEAALI
ATRHLSPFVQEKRLEQAVERVVGGLEKKMQVLQPSEKMTVAYREAGHAVVGWFLEHADAL
LKVSIIPRGKGLGYAQCLPREQYLYTREQLFDHMCAMLGGRVAEQLFLQITTGAQDDLRK
VTQSAYAQIVQFEMSEKLGQVSFDLPRPGEVLVEKPYSEAAAQLIDQEAWRLVSSAHAHA
HTLDLLTRSRERVDEVGRRLLGKEVLECADMVELLGPRPFAEKTAYEELVEGTGGLEDTS
LPQGLKGWXLGLEEGGTECPLQESPA
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atgcgtcaggcacccggaggtcggctgggggtgtggcgccctatgacctattcgccgctg
aactggatgttgcagtggctggtggcggcggccggcagcagggcggtggccgtgccgctc
accgtgctgcagggatgtggcggtggcccacgaagcggcaggacggctggggcaggcgtg
agggccctcggaaccgcccagcaggtggaccggctggaagtcgtgaacaaacagtttgtg
cgtgttattactgcccctgggacatcgtctgagaagtttgtgtggttcaacatcggcagc
gtgcacaccttcgagcgcaacctggagaccgcccactgggagctgggcatcgagctcgcg
gagcagacggccgtggtctacaccaccgagagcgatgggtctttcttgcgaaggctggtg
cccacctttctcctgatcggaagcctcctctatgtcgcgaggaggggcccgatgggggct
gggcgtggcaggagaggagggggcctctttaccgttggcgagaccacagccaagatcgtg
aagaacaacgtcggcgtgcgctttgcagacgtggctggttgcgaagaagccaagttggag
atcatggagtttgtgaatttcctgaagaatcccaagcagtatcaggacctcggggccaaa
attccaaagggagccatgctcaccggtcctcctggtaccggcaaaacgcttctcgccaag
gcaactgcaggggaggccagtgtgcccttcatcaccgtgaacgggtccgagttcctggaa
atgttagtcggcgtcggtccagctcggaccctgcgtggactcctgtttcacgtccgtgac
gtgtatgcaatggcccgaagaaatgctccctgtgtcttgttcattgaggagattgacgcg
atgggcaggaattgcggccgtgggcactttgggggccagagtgcgcaggagaacnccctg
aaccagctgctcgtggagctagacgggttcagctctaccacgagcgtcatggtgctggcg
ggcaccaaccgccccgacatccttgacctggccctgacgcggcccggcccgtttgaccgt
cagatttacattggcccccctgacatcaaaggcaggtcgtccatcttcagggtccacctg
cgtccactcaagttggacgagagcctcagtgaggaccccctggcgaggaagcttgcggcc
ctcactccaggcttcacaggtgctgatatttctaatgtttgcaacgaagcggccctgatc
gccacccgccacctgagtccttttgtccaggagaagcgcttggagcaggcggttgagagg
gtcgtcggaggtctcgagaagaagatgcaggtcctacagcccagcgagaagatgacggta
gcctaccgtgaggctggccacgcggtggtgggctggttcctggagcatgcagacgccctg
ctcaaggtgtccatcatcccccggggcaaggggctcgggtacgcccagtgcctgcccagg
gagcagtacctgtacacgcgggagcagctcttcgaccacatgtgcgccatgctgggtggc
cgggtggccgagcagctgttcttgcagatcaccacgggggcccaggacgacctgaggaag
gtcacccagagtgcctacgcccagattgtgcagttcgagatgagcgagaagctgggccag
gtgtcctttgacctcccccggcctggcgaggtgctggtggagaagccgtacagcgaggcc
gcggcccagctcatcgaccaggaggcttggcggctggtcagctctgcgcacgcgcacgcg
cacaccctggacctgttgacgcgctcccgggagcgggtggacgaggtgggcaggcggctg
ctggggaaggaggtgctggagtgtgccgacatggtggagctgcttgggccccgacccttt
gcggagaagaccgcctacgaggagctcgtggagggcaccggtggcctggaggacacgtcc
cttccccaggggctgaagggctggntgctggggctggaggagggcggcacggagtgcccc
ctgcaggagagcccagcctag
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