Phocoena sinus (vaquita): 116745128
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Entry
116745128 CDS
T07759
Symbol
RAI1
Name
(RefSeq) retinoic acid-induced protein 1
KO
K19749
retinoic acid-induced protein 1
Organism
psiu
Phocoena sinus (vaquita)
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
psiu03000
]
116745128 (RAI1)
Transcription factors [BR:
psiu03000
]
Eukaryotic type
Zinc finger
Other zinc fingers
116745128 (RAI1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-HC5HC2H
zf-HC5HC2H_2
Motif
Other DBs
NCBI-GeneID:
116745128
NCBI-ProteinID:
XP_032471466
Ensembl:
ENSPSNG00000011221
UniProt:
A0A8C9BYF9
LinkDB
All DBs
Position
20:752952..858551
Genome browser
AA seq
1884 aa
AA seq
DB search
MQSFRERCGFHGKQQTYQQTSQETSRLENYRQQPSQAGLSCDRQRLLTKDYYGPQPFPSY
EGGAGTPATAARTSKGLSSPQAPQGRPSFPGYAVQDGSPYPGRYSGEEGLQAWGAPQPPP
PQPQPLPGAVGKYDESLMKKTAAPPARQYPEQGAQLPFRTHTLHVPQQPPQPLAYPKLQR
QKPQNDLASPLPFPPGSHFPQQSQSFPVSSTYSSTGQGGGQGAHSYKSCTAPSTQPHDRP
LTANAGLAPGQRVPSLHAYQPGRLSYEPQKQQQQQALQSRHHAQETLHYQNLTKYQHYGQ
QGPGYCQPDAAVRTPEQYYQTFSPGSSHSPARSVGRSPSYSSTPSPLMPNLESFPYNPQP
LGPGAFPAGLADHSHFLPLLNPSPTDAAGSVDAQAANCKALQKDKLPESLLSDLSLHSLT
ALTSQVENISSTVQQLLLSKAALPQKKGAKSLAARTPEQHKSQHCSPEGSGYSAEPAGTP
LSEPLSSTPQSTHAEPPEADYLSGSEDPLERSFLYCSQARGSPARVHGSSKAKPESVSTC
SVTSPDDMSTKSDDSFQSLHGSLPLDSFSKLVAGERDCPRLLLSALAQEDLASEILGLQE
AISEKADKVWAEAPGLAKDTGKPPFSLENHSACLDPVAKGAWPRPGEQDALPEALQLEKG
GGTKDFGPGLFEDPSVGFATPDPKKTTGPLSFGAKPTLGAAASDPATAAFDCFPDTTAAS
SADGANPFAWPEENLGDACPRWGLHPGELAKGLEQGGKAADSVSQEDAREASACLGFQEE
QPSGEKAVVPRDSQQEEGGGVKEEAGGLLQCPEVGKADRWLEDSRHCCSATDFGDLPLLP
PAGRKGDLEAEEYSSLCELLGSPEQRPGLQDPLSPKAPLLCGKEEVEEVLDPKAGWGSPC
ALSGESVILLGPTVGTESKVQSWFESSLSHMKPGEEGPEGALAPGDSTALAPEASLTQKP
NKPAVPEAPIAKKEPVPRGKSLRSRRVHRGLPEAEDSPCRAPALPKDLLLPESCTGPPQG
QMEGAGAPGRGTSEGLPRMCTRSFTALSEPRTPGPPGLPTTPAPPDKLGGKQRAAFKSGK
RVGKPSPKAASSPSNPAALPVASDSSPMGSKTKETDSPDAPGKDQRSMILRSRTRTQEAF
HCKRRRASESRLPNCRAAKKLLANNHLPATFKVAGSPQEGRAGQRARVPKPGAGGKLSDR
PLHTLKRKSAFMAPVPTKKRNLVLRSGSTSTSGDTKEEGAEGPPTLFKRMTSPKKAKPAK
GGNSEPTAKPPPPETPDASLKLASRASIQGAMKTKVLPPRKGRGLKLEAIVQKITSPSLK
KFACRAPGAPPGNPLSPSLPEKDRGLKSAGGSPRRAEEGLLNVSTGQKFPAALGADPLCR
NPTNRSLKGKLVNNKKLSSTDGFKTEAFTSPEALLPGGTALAPKKRSRKGRAGALGLPKG
SLEKRPHLGPALLLTASSTQGGSEDSSGGGGKKPKTEELGLASQPPEGRPCQPQVRAQKQ
PGHANYSSYSKRKRLTRGRAKNAATSPCKGRAKRRRQQQVLPLDPAEPEIRLKYISSCKR
LRADSRTPAFSPFVRVEKRDAFTTVCTVVNSPGDEPKPHRKPSSSSSSCSFSLDAAGASL
ATLPGGSILQPRPSLPLSSTMHLGPVVSKALSTSCLVCCLCQNPANFKDLGDLCGPYYPG
HCLPKKKPKLKEKVRPESTCEEASLPLERTLKGLECPAAAAAATATTTGKPPRPDGPADP
AKQGSLRTSARGLSRRLQSCYCCDGRGEGGEETAPADRSRKHECSKEPLAEPGGDAQEHW
VHEACAVWTGGVYLVAGKLFGLQEAMKVAMDMTCSSCQEAGATIGCCHKGCIHTYHYPCA
SDAGCIFIEENFSLKCPKHKRLPL
NT seq
5655 nt
NT seq
+upstream
nt +downstream
nt
atgcagtcttttcgagaaaggtgtggtttccatggcaaacagcagacctaccagcagacc
tcacaggagacatctcgcctggagaattaccggcagcagccgagtcaggctgggctgagc
tgcgaccggcagcgtctgctgaccaaggactattacggcccgcagcccttccccagctac
gagggcggcgccggcacgcccgccacggcggcgcgcaccagcaaaggcctgtcctctccg
caggccccgcaggggaggccgtccttcccgggctacgctgtccaggacggcagcccctac
cccggccgctactcaggggaggagggcctgcaggcctggggggcgccgcagccaccaccc
ccgcagccgcaacccctgccaggggcggtgggcaaatatgacgagagcctgatgaaaaag
acagcagcgccccccgcccggcagtacccagagcagggcgcccagctgccctttcggact
cacaccctccacgtcccgcagcagcccccgcagcccctggcttaccccaagctccaaagg
cagaagccccagaacgacctcgcctcgcccctgcccttccccccgggcagccacttcccc
cagcagtcccagtccttccccgtctcctccacctactcctccaccggccagggcggcggg
cagggggcccactcctacaagagctgcacggccccgtccacccagccccacgacaggccg
ctgaccgccaacgccggcctggccccaggccagcgggtcccgagccttcacgcctaccag
cctgggcgcctcagctacgagccccagaagcagcagcagcagcaggccctccagagccgc
caccacgcccaggaaaccctccactaccagaacctcaccaagtaccaacactacgggcag
caaggcccaggctactgccagccggacgcggccgtcaggaccccggagcagtactaccag
accttcagccccggctccagccactcgcccgctcgctccgtgggccgctccccttcctac
agctccaccccgtcgccactgatgcccaacctggagagctttccctacaacccgcagccg
ctgggccccggagccttccccgccggtctcgcggaccacagccacttcctgcccctgctc
aacccctccccgacggacgccgccggctccgtggatgcccaggccgccaactgcaaggcc
ctgcagaaggacaagcttcccgagagcctgctgtcagacctgagcctgcacagcctcacg
gcgctgacctcgcaggtggaaaacatctccagcaccgtgcagcagctgctgctctccaag
gcggccctgccccagaagaagggcgccaagagcctggcggcccggaccccggagcagcac
aagagccagcactgcagccccgagggcagcggctactcagccgagccggcaggcacgccg
ctgtcggagccgctgagcagcacgccacagtccacgcacgccgagccgcccgaggccgac
tacctgagtggctccgaggacccgctggagcgcagcttcctctactgcagccaggcccgc
ggcagccccgccagggtccacggcagctccaaggccaagcccgagtccgtgtccacctgc
tccgtgacttcacccgacgacatgtccaccaagtccgatgactccttccagagcctgcac
ggcagcctgccgctcgacagcttctccaagctcgtggctggcgagcgggactgcccgcgc
ctgctgctcagcgccctggcgcaggaggacctggcctccgagatcctggggctgcaggag
gccatcagcgagaaggccgacaaggtctgggccgaggcgcccggcctggccaaggacacc
ggcaagccgcccttctcgctggagaaccacagcgcctgcttggaccccgtggccaagggt
gcgtggccgcggccgggggagcaggacgccctgcccgaggccctgcagctggagaagggc
ggcggcaccaaggacttcggcccggggctgttcgaagatccctccgtgggcttcgccacc
cctgaccccaagaagacaactggtcccctctcctttggtgccaagcccacgctgggggcc
gccgcctcggaccccgccacggcggctttcgactgcttcccagacacgaccgccgccagc
tcagcggacggcgccaaccccttcgcctggcccgaggagaacctgggggatgcctgtccc
cggtggggactgcaccccggcgagctcgccaagggcctggagcagggcgggaaggccgcc
gacagcgtcagccaggaggacgcccgcgaggcttcggcctgcctgggcttccaggaggag
cagccctcgggggagaaggccgtggtgccccgggactcccagcaggaggaggggggcggg
gtgaaggaggaggcgggcgggctgctgcagtgtcccgaggtgggcaaggccgaccggtgg
ctggaggacagccggcactgctgctccgccactgacttcggagacctcccgctgctgccg
cccgccggcaggaagggggacttggaggcggaggagtactcgtctctgtgcgagctcctg
ggcagccccgagcagaggccgggcctgcaggacccgctgtcgcccaaggccccgctgctg
tgtggcaaggaggaggtggaggaggtgctggaccccaaggccggctggggctccccgtgt
gccctgtctggcgagtccgtcatcttgctgggccccaccgtgggcaccgagtccaaggtg
cagagctggttcgagtcctccctctcccacatgaagccgggggaagaggggcccgagggg
gcgctggccccgggggattccaccgccctggccccggaagcctccctgacccagaagccg
aacaagcccgctgtgcccgaggcgcccatcgccaagaaggagcctgtgcctcgtggcaaa
agcttacggagccggcgggtgcaccgggggctgcccgaggccgaggattccccgtgcagg
gccccggcgctgcccaaagacctgctgctccctgaatcgtgcacggggcccccccaggga
cagatggaaggggcgggggccccaggccgggggacctcggaagggctccccaggatgtgc
acccgctccttcacggccctgagtgagccccgcacacccggacccccgggcctgcccacc
acccctgcccccccagacaagctggggggtaagcagcgagccgccttcaagtcgggcaag
cgggtggggaagccctcccccaaggccgcttccagccccagcaacccggccgccctgccc
gtggcctccgacagcagccccatgggctccaagaccaaggagacggactcgccggatgca
ccaggcaaagaccagcgctccatgatcctccggtcccgcaccaggacgcaggaggccttc
cactgcaagcggcgacgggcctcggagagccggctccccaactgccgcgccgccaagaag
ctcctcgccaacaaccacctgcccgccacgttcaaggtcgccggtagcccccaggagggc
agggcgggccaacgggcaagggtccccaagcctggtgcaggcggcaagctctccgatcgg
cccctgcacaccctcaagaggaagtcggccttcatggcacctgtccccaccaagaagcgc
aacctggtcttacgcagcggcagcaccagcaccagcggggacacgaaggaggagggggcc
gagggccctcccaccctcttcaagaggatgacgtctcccaagaaggccaagcccgccaag
ggcggcaacagtgagcccacggcaaagccgccgcccccggagacccctgacgccagcctg
aagctggcctcacgggcatccatccagggggccatgaagaccaaggtgctgcccccccgg
aaaggccggggcctgaagctggaggccatcgtgcagaagatcacctcgcccagcctgaaa
aagttcgcgtgcagagcaccaggggcccctcccgggaatcctctgagcccatccctcccc
gagaaggaccgcgggctcaagagcgcagggggcagcccgcggagggcagaagaaggtctc
ttaaacgtgagcactgggcagaagttcccagcagccttgggggccgatccgttatgcaga
aatccgaccaacagatccttaaaaggcaaactcgtgaacaataagaaactgtcctcgact
gacggtttcaaaactgaggccttcacatccccagaggccctactgcccgggggcactgcc
ctggcacctaagaagagaagccggaaaggcagggctggagccctcggactccccaaaggc
tccctggagaagagacctcatctcggcccagctctgctcctgacggccagcagcacgcag
gggggcagcgaggacagctctggcggaggaggcaagaagccaaagacggaggagctgggg
ctggcctcccagccccctgagggccggccctgccagccccaggtgagggcacagaagcag
cctggccacgccaactacagcagctattccaagcggaagcgcctgacgcggggccgggcc
aagaacgccgccacctcaccctgtaaggggcgtgccaagcggcggcgacagcagcaggtg
ctgcccctggatcccgcggagcctgaaatccgcctcaaatacatttcctcctgcaagcga
ctgcgagcagacagccgcacccccgccttctcgcccttcgtgcgggtggagaagcgggat
gcgttcaccaccgtatgtactgtagtcaactcccccggagacgagcccaagccccacagg
aagccttcctcctcttcatcctcttgctccttctccttggacgcggccggggcctcccta
gccacgctccctggaggctccatcctgcagcctcggccctcactacccctctcctccacc
atgcatctggggcccgtggtctccaaggccctgagtacctcttgccttgtttgctgcctc
tgccaaaacccagccaacttcaaggacctcggggacctctgtgggccctactaccccgga
cactgcctccccaaaaagaagccaaaactcaaggagaaggtgcggccagagagcacctgc
gaggaggcctctctgcctcttgagaggacactcaaaggcctcgagtgcccagctgccgcc
gccgccgccaccgccaccaccaccgggaagccccccaggcctgatggcccagccgatcca
gccaagcagggctccctgcgcaccagcgcccggggcctgtcccggcggctgcagagttgc
tactgctgtgacggtcggggggaaggtggtgaagagacggccccagctgacaggagccgc
aagcacgagtgcagcaaggagccgctggcagagcctggcggggacgcacaggagcactgg
gtgcacgaggcctgcgccgtgtggacgggcggggtctacctggtggccgggaagctcttt
gggctgcaggaggccatgaaggtggccatggacatgacttgttccagctgccaagaagcc
ggggccactatcgggtgctgccacaaaggatgcatccacacctaccattacccatgtgcc
agcgatgcgggttgcatattcatcgaagagaacttttctttgaaatgccccaaacataag
aggctgccattgtaa
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