Phocoena sinus (vaquita): 116745321
Help
Entry
116745321 CDS
T07759
Symbol
PRPF8
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116745321 (PRPF8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
psiu03041
]
116745321 (PRPF8)
Spliceosome [BR:
psiu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
116745321 (PRPF8)
Complex C
U5 SnRNP specific factors
116745321 (PRPF8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
116745321
NCBI-ProteinID:
XP_032471827
Ensembl:
ENSPSNG00000021481
UniProt:
A0A8C9EBY3
LinkDB
All DBs
Position
20:13115538..13153437
Genome browser
AA seq
2335 aa
AA seq
DB search
MAGVFPYRGPGNPVPGPLAPLPDYMSEEKLQEKARKWQQLQAKRYAEKRKFGFVDAQKED
MPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDVPVLY
HITGAISFVNEIPWVIEPVYISQWGSMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYAD
NILDVEPLEAIQLELDPEEDAPVLDWFYDHQPLRDSRKYVNGSTYQRWQFTLPMMSTLYR
LANQLLTDLVDDNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDINLQDEDWNEFNDIN
KIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFDPLINPIS
HRHSVKSQEPLPDDDEEFELPEFVEPFLKDTPLYTDNTANGIALLWAPRPFNLRSGRTRR
ALDIPLVKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLFRSFKATK
FFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRF
GNAFHLCREVLRLTKLVVDSHVQYRLGNVDAFQLADGLQYIFAHVGQLTGMYRYKYKLMR
QIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAAGWRVWLFFMRGITPLLERWLGNLLARQF
EGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLSEAWRCW
KANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNLGRLT
RLYLKAEQERQHNYLKDGPYITAEEAVAVYTTTVHWLESRRFSPIPFPPLSYKHDTKLLI
LALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIEFMD
LYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPLLVYKWCQGIN
NLQDVWETSEGECNVMLESRFEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVINYK
DMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLSFQDIATE
AAHPIRLFCRYIDRIHIFFRFTADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRDARM
RLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFECRILPKC
RTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTFTKIV
NKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK
ELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWESEFI
DSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRT
DFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEG
LFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGI
FMHGKIPTLKISLIQIFRAHLWQKIHESIVMDLCQVFDQELDALEIETVQKETIHPRKSY
KMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDIERYA
RAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGNWFPGSKPLIQQAMAKIMKANPAL
YVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTT
KPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQ
IIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLFNLY
DDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWIKVE
VQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQSQLT
ATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDDIKET
GYTYILPKNVLKKFICISDLRAQIAGYLYGVSPPDNPQVKEIRCIVMVPQWGTHQTVHLP
GQLPQHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHAKIMADNPSWDGEKTIIITCSFTP
GSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPAQSSWN
YNFMGVRHDPNMKYELQLANPKEFYHEVHRPSHFLNFALLQEGEVYSADREDLYA
NT seq
7008 nt
NT seq
+upstream
nt +downstream
nt
atggccggagtatttccttaccgagggccgggtaacccggtgcctggccctctagccccg
ctgccagactacatgtcggaggagaagcttcaggagaaagcccggaaatggcagcagttg
caggccaagcgctatgcggaaaagcggaagtttggatttgtggatgctcaaaaggaagac
atgcctccagaacatgtcaggaagatcattcgagaccatggagacatgaccaacaggaag
tttcgccatgacaaaagggtgtacttgggtgccctaaagtacatgccccatgcagtcctc
aaactcctggagaacatgcctatgccttgggagcagattcgggatgtgcctgtgctgtac
cacatcactggagccatttcctttgtcaatgagattccctgggttattgaacctgtctac
atctcccagtgggggtcaatgtggattatgatgcgtcgagaaaaaagagacaggaggcat
ttcaagaggatgcgtttccccccttttgatgatgaggagccgcctttggactatgctgac
aacatcctagatgttgaaccactggaggcaattcagctagagctggaccctgaggaagat
gccccggtgttggactggttctatgaccaccagccattgagggacagccggaagtacgtg
aatggttccacttaccagcgctggcagttcacactgcctatgatgtccactctctaccgc
ctggccaatcagctcctgacagacttggtagatgacaattacttctatctgtttgatctg
aaggccttttttacctccaaggcactcaatatggccattcctggaggccccaaatttgag
cctcttgtcagagacatcaacctacaggatgaagactggaatgaattcaatgatattaac
aagatcattatccggcagcccatccgcactgagtacaagattgcttttccttacttgtac
aacaaccttccgcaccatgtccacctcacctggtaccacactcctaatgttgtgttcatc
aaaactgaggatcctgatttgccagctttctactttgatcctttgatcaacccaatttcc
cataggcactctgtcaagagtcaggaaccattgccagatgacgacgaggagtttgagctt
ccagagtttgtggagcccttcttgaaagacacacccctctatacagacaatacagccaat
ggcattgccctgctttgggccccacggcccttcaacctacgctctggtcgcacccgccgg
gccttagacattccccttgtcaagaactggtatcgggagcattgtcctgctgggcagcct
gtgaaagtgagggtctcctaccagaagctgcttaagtactatgtgctgaatgccctgaag
caccggccccctaaagcgcagaagaagaggtatctgttccgttccttcaaagccaccaaa
ttctttcagtctacaaagctggactgggtggaggtggggctacaggtttgccgccagggc
tacaacatgctcaaccttctcattcaccgtaaaaatctcaactatctgcacctggactac
aacttcaacctcaagcctgtcaagacgctcaccaccaaggaacgaaagaaatctcgtttt
gggaatgctttccatctgtgtcgagaggttctgcgcttaactaagctggtggtggacagt
catgtgcagtatcggttgggcaatgtggatgccttccagctggcagatgggttgcagtat
atctttgcccacgtggggcagctgacgggcatgtaccggtacaaatataagctgatgcgg
cagattcgcatgtgcaaggacctgaagcatctcatctattaccgcttcaacacgggccct
gtagggaagggccctggctgtggtttctgggctgctggctggcgagtctggctgtttttc
atgcgtggcatcacccctttgctggagcgatggctgggtaacctcctggcccggcagttt
gaaggccgacactcaaagggggtggcaaagaccgtaacaaagcagcgagtggagtcacat
tttgaccttgagcttcgggcagctgtgatgcatgacattctggacatgatgcctgagggg
atcaaacagaacaaggcccggacaatcctgcaacacctcagtgaagcctggcgctgctgg
aaggccaatattccctggaaggtccctggtttgccaacacctatagagaacatgatcctt
cgatacgtgaaggccaaggctgactggtggaccaacactgcgcactacaaccgagaacgg
atccgccgtggggccactgtagacaagactgtttgcaaaaagaacctgggacgcctcact
cggctctacctgaaggcagaacaagagcggcagcacaactacctaaaggacgggccttac
atcacagcagaagaagcggtggcggtgtataccaccactgtgcattggctggaaagccgt
aggttctcacccatcccattccccccactctcctacaagcatgacaccaagttgctcatc
ttggccttggagcggctcaaggaagcttacagtgtgaagtctcggttaaaccagtcgcag
agggaggagctaggtctgatcgagcaagcctatgacaacccccacgaggcattgtcccgc
atcaagcgtcacctcctcacacagagagcctttaaagaagtgggcattgagttcatggat
ctctatagccacctggtgccagtgtatgatgtggagccactggagaagataactgatgcc
tacctggaccagtacctgtggtatgaagctgacaagcgccgccttttcccaccctggatc
aagcctgctgacacagaaccacctcctctgcttgtttacaagtggtgccaaggcatcaac
aacctgcaggacgtgtgggagacaagtgagggcgagtgcaacgtcatgctggagtcccgg
tttgagaagatgtatgagaagatagatttgaccctgcttaatcggctgctgcgcctcatc
gtggaccacaacatagccgactacatgacagccaagaacaacgtcgtcatcaactacaag
gacatgaaccatacgaattcatatgggatcattagaggcctgcagtttgcctcattcatc
gtacagtactatggcttggttatggatttgcttgtgttgggattgcaccgggccagtgag
atggctggtccccctcagatgccaaatgattttctcagtttccaagacatagccactgag
gctgcccaccccatccgtcttttctgcagatacatcgatcgcatccatatttttttcagg
ttcacagcagatgaggctcgggacctgatccagcgttacctgacagagcaccctgacccc
aacaatgaaaacatcgttggctataataacaagaaatgctggccccgagacgcccgcatg
cgcctcatgaagcatgatgtcaacttgggtcgggcagtgttctgggacatcaagaaccgt
ctgccacgctcagtgactacagttcagtgggagaacagcttcgtgtccgtgtacagtaag
gacaaccccaacctgctgttcaacatgtgtggttttgagtgccgcatcctgcctaaatgc
cgcaccagctatgaggagttcacccacaaggatggggtctggaacctacagaatgaggtt
actaaggagcgaacagctcagtgtttcctgcgtgtggatgatgagtcaatgcagcgcttc
cacaaccgtgtgcgtcaaattctgatggcctctggctccaccaccttcaccaagattgtg
aataagtggaacacagctcttattggccttatgacatactttcgggaggctgtggtgaac
acccaggagctcctggacttgctggtgaagtgtgagaacaagatccagacacgaatcaag
attggtctcaactccaagatgccgagtcgcttcccccctgtcgtgttctacacccctaag
gagttgggtggacttggcatgctctcaatgggccatgtgctcatcccccaatctgacctc
aggtggtccaagcagacagatgtaggtatcacacactttcgttcaggaatgagccatgaa
gaagaccagctgattcccaacttgtatcgctacatacagccctgggagagtgagttcatt
gattctcagcgggtctgggctgagtatgcactcaagagacaagaggccattgcgcagaac
agacgactgaccctagaagatctagaggattcatgggatcgtggcattcctcgaatcaac
accctcttccagaaggaccggcatacactggcttatgataagggttggcgtgtcagaact
gactttaagcagtaccaggttttgaagcagaaccctttttggtggacacaccagcggcat
gatggaaagctctggaacctgaacaactaccgtacagacatgatccaggccctgggtggt
gtggaaggcattctggaacacactctcttcaagggcacttacttccctacctgggagggg
cttttctgggagaaggccagtggttttgaggagtctatgaagtggaagaaactaaccaat
gctcagcgatcaggattgaaccagattcccaatcgtagattcaccctctggtggtcccca
accatcaaccgagccaacgtatacgtaggctttcaggtgcagctggacctgacaggtatc
ttcatgcacggcaagatccccacactgaagatctctctcatccagatcttccgagctcac
ttgtggcagaagatccacgagagcatcgttatggacttgtgtcaggtgtttgatcaggaa
ctggatgcactggaaattgagacagtacaaaaggagacaatccacccccgaaagtcctat
aagatgaactcttcctgtgcagatatcctgctctttgcctcctataagtggaatgtctcc
cggccctcattgctggcagactctaaggatgtgatggacagcaccaccactcagaagtat
tggattgacatccagttgcgctggggggactatgattcccatgacatcgagcgctacgcc
cgggccaagttcttggactacaccacagacaacatgagtatctacccttcgcccacaggt
gtgctcattgccatcgacctggcctataacctgcacagtgcctatggaaactggttccct
ggcagcaagcccctcatacagcaggccatggccaagatcatgaaggcaaaccctgccttg
tatgtgttacgtgaacggatccgtaaagggctgcagctttattcatctgagcccactgag
ccctatctgtcctctcagaactatggtgaactcttttccaaccagattatctggtttgtg
gatgacacgaatgtctacagagtgactatccataagacctttgaagggaacctgaccacc
aagcccatcaatggggccatcttcatcttcaacccacgcacagggcagctgtttctcaag
ataattcacacatctgtgtgggctggacagaagcgtttggggcagttggctaagtggaag
acagctgaggaggtggctgccctgatccgatctctaccagtggaggagcagcccaagcag
atcattgtcaccaggaaaggcatgctcgatccattggaggtgcacttgctggacttcccc
aatattgtgatcaaaggatcagagctccagctccccttccaggcttgtctcaaggtggaa
aagtttggggatctcatccttaaagccactgagccgcagatggttctctttaacctctat
gatgactggctcaagactatctcatcttacacggctttctcccgcctcatcctgattctg
cgtgccctgcatgtgaacaacgaccgggcgaaggtcatcctgaagccagacaagactacg
atcacagaaccacaccacatctggcccactctgactgacgaggagtggatcaaggtggag
gtgcagctcaaggaccttatcttggctgactatggcaagaaaaacaatgtgaatgtggca
tcactgacacaatcagaaattcgagacatcatcctgggtatggagatctctgcaccatca
cagcagcggcagcagatagctgagattgagaagcagaccaaggaacagtcacagctgact
gcaacccagactcgtactgtcaacaagcatggtgacgaaatcatcacctctaccaccagc
aactatgagacccagactttctcatctaagactgaatggagggtcagggccatctctgcc
gccaacctgcacttaaggaccaatcacatctatgtttcatctgatgacatcaaggagact
ggttatacctatattcttcccaagaacgtgcttaagaagtttatctgcatatctgacctt
cgggcccaaattgcagggtacctctatggggtgagcccaccagataacccccaggtgaag
gagatccgctgcatcgtgatggtaccacagtggggcactcaccagactgtgcacctgcct
ggccagctgccccagcatgagtacctcaaggagatggaacccttaggttggatccacact
cagcccaatgagtccccccagctgtcaccccaggatgtcaccacccatgccaagatcatg
gctgacaacccatcttgggatggcgagaagaccattatcatcacctgcagcttcacacca
ggctcctgcaccctgacagcctacaagctgacccccagtggctatgaatggggccgccag
aacacagacaagggcaacaaccccaagggctacctaccctcgcactacgagagggtccag
atgctactgtcagaccgcttccttggcttctttatggtccctgcccagtcctcgtggaac
tacaactttatgggtgttcggcatgatcccaacatgaagtatgagctacagctggcaaac
cccaaagagttctaccacgaggtgcacagaccctcccacttcctcaactttgctctcctg
caggagggcgaggtctactctgcggaccgagaggacctctatgcctag
DBGET
integrated database retrieval system
