Phocoena sinus (vaquita): 116745358
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Entry
116745358 CDS
T07759
Symbol
DDX5
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu03040
Spliceosome
psiu05202
Transcriptional misregulation in cancer
psiu05205
Proteoglycans in cancer
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116745358 (DDX5)
09160 Human Diseases
09161 Cancer: overview
05202 Transcriptional misregulation in cancer
116745358 (DDX5)
05205 Proteoglycans in cancer
116745358 (DDX5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
psiu03041
]
116745358 (DDX5)
03009 Ribosome biogenesis [BR:
psiu03009
]
116745358 (DDX5)
Enzymes [BR:
psiu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
116745358 (DDX5)
Spliceosome [BR:
psiu03041
]
Complex A
U1 snRNP components
U1 related factors
116745358 (DDX5)
Complex B
116745358 (DDX5)
Ribosome biogenesis [BR:
psiu03009
]
Eukaryotic type
Pre-60S particles
Helicases
116745358 (DDX5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
P68HR
ResIII
Helicase_C_2
Cas3-like_C_2
ERCC3_RAD25_C
BNIP2
Motif
Other DBs
NCBI-GeneID:
116745358
NCBI-ProteinID:
XP_032471919
Ensembl:
ENSPSNG00000019077
UniProt:
A0A8C9E818
LinkDB
All DBs
Position
20:complement(44781893..44788872)
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AA seq
614 aa
AA seq
DB search
MSGYSSDRDRGRDRGFGAPRFGGSRAGPLSGKKFGNPGEKLVKKKWNLDELPKFEKNFYQ
EHPDLARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAI
QAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELA
QQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLR
RTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHI
NIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRK
MRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPN
SSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKLLQLVEDRGS
GRSRGRGGMKDDRRDRYSAGKRGGFNTFRDRENYDRGYSSLLKRDFGAKTQNGVYSAANY
TNGSFGSNFVSAGIQTSFRTGNPTGTYQNGYDSTQQYGSNVANMHNGMNQQAYAYPATAA
APMIGYPMPTGYSQ
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggttattcgagtgaccgagaccgcggccgggatcgagggtttggtgcccctcga
tttggaggaagtagggcagggcccttatctggaaagaagtttggaaaccctggggagaaa
ctggttaaaaagaagtggaatcttgatgagctgcccaaatttgagaagaatttttatcag
gagcaccctgatttggctaggcgtacagcacaagaggtagagacgtacagaagaagcaag
gaaattacagtcagaggtcacaactgtccaaagccagtcctgaatttttatgaagcaaac
ttccctgcaaacgtcatggatgtgattgcaaggcagaactttactgaacccacagctatt
caagctcagggatggccagttgctctaagtggattggatatggttggggtagcacaaact
ggatctgggaagacgttgtcttatttgctgcctgccattgtccacatcaatcatcagcca
tttctagagagaggtgatgggcctatttgcttggtgctggcaccaactcgggaactggcc
caacaagtacagcaagtagctgctgaatactgtagagcatgtcgcttgaagtccacttgt
atttatggtggtgctcccaagggaccacagatacgtgatttggagagaggtgtggaaatc
tgtattgcaacacctggaagactgattgactttttagaatgtgggaaaaccaatttaaga
agaaccacttaccttgtccttgatgaagcagatagaatgcttgatatgggattcgaaccc
caaataaggaagattgtggatcagataagacctgataggcaaaccctaatgtggagtgct
acttggccaaaagaagtaagacagcttgctgaagatttcttgaaagactatattcacata
aacattggtgcactagaactgagtgcaaatcacaacattcttcagattgtggatgtgtgt
catgatgtagaaaaggatgaaaagcttattcgtttaatggaagagatcatgagtgagaag
gagaataaaaccattgtttttgttgaaaccaaaagaagatgtgatgaactcactagaaaa
atgaggagagatgggtggcctgccatgggtatccatggtgacaagagtcaacaggaacgt
gactgggttctaaatgaattcaaacatggaaaggctcctattctgattgctacagatgtg
gcctccagagggctagatgtggaagatgtgaaatttgtcatcaattatgactaccctaac
tcctcagaggattatattcatcgaattggaagaactgctcgcagtaccaaaacaggcaca
gcatacactttctttacacctaataacataaagcaagtgagcgaccttatctctgtgctt
cgtgaagctaatcaagcaattaatcccaaattgcttcagttggtcgaagacagaggttca
ggtcgttccaggggtagaggaggcatgaaggatgaccgtcgggacagatactctgcgggc
aaaaggggtggatttaatacatttagagacagggaaaattatgaccgaggttattctagt
ctgcttaagagagattttggggcaaaaactcaaaatggtgtttacagtgctgcaaattac
accaatgggagctttggaagtaattttgtgtctgctggtatacagaccagttttaggact
ggtaatccaacagggacttaccagaatggttatgatagcactcagcaatatggaagtaat
gttgcaaatatgcacaatggtatgaaccaacaggcatatgcatatcctgctactgcagct
gcgcctatgattggttatccaatgccaacaggatattctcaataa
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