Phocoena sinus (vaquita): 116745607
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Entry
116745607 CDS
T07759
Symbol
CASC3
Name
(RefSeq) protein CASC3 isoform X1
KO
K14323
protein CASC3
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu03013
Nucleocytoplasmic transport
psiu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
116745607 (CASC3)
03015 mRNA surveillance pathway
116745607 (CASC3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psiu03019
]
116745607 (CASC3)
Messenger RNA biogenesis [BR:
psiu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
116745607 (CASC3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Btz
Motif
Other DBs
NCBI-GeneID:
116745607
NCBI-ProteinID:
XP_032472354
Ensembl:
ENSPSNG00000009773
UniProt:
A0A8C9BY80
LinkDB
All DBs
Position
20:38180847..38203179
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AA seq
703 aa
AA seq
DB search
MADRRRQRASQDTEDEESGASGSDSGGSPARGGGSCSGSAGGGGSGSLLSQRGGRAGALH
LRRLESGGAKSAEESECESEDGIEGDAVLSDYESAEDSEGDEGEYSEEENSKVELKSEAN
DAANSSAKDEKGEEKPDTKGTVTGERQSGDGQESTEPVENKVGKNGPKHLDDDEDRKNPA
YIPRKGLFFEHDLRGQTQEEEVRPKGRQRKLWKDEGRWEHDKFREDEQAPKSRQELIALY
GYDIRSAHNPDDIKPRRIRKPRFGSPPQRDPNWIGERPNKSHRHQGPGGTLPPRTFINRN
AVGTGRMSAARNYSRSGGFKEGCAGFRPVEAGGQHAGRSGETVKHETSYRSRRLEQTPVR
DPSPEADAQVLGSPEKEEAAPEIPNPAPDTAPPAPDRPIEKKSYSRARRTRVKAGDAVKV
AEEVPPPPEGLTPAPPVPETTPPPPAKTGNWEAPVDSTTGGLEQDVAQLNITEQNWSPGQ
PSFLQPRELRGMPNHIHMGAGPPPQFNRMEEMGVQGGRAKRYSSQRQRPVPEPPAPPVHI
SIMEGHYYDPLQFQGPIYTHGDSPAPLPPQGMIVQPEMHLPHPGLHPHQTPAPLPNPGLY
PPPVSMAPGQPPPQQLLAPTYFSAPGVMNFGNPSYPYAPGALPPPPPPHLYPNTQAPSQV
YGGVTYYNPAQQQVQPKPSPPRRTPQPVTIKPPPPEVVSRGSS
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atggcggaccggcggcggcagcgcgcttcgcaggacaccgaggacgaagaatctggtgct
tccggctcagacagcggcggttccccggcgcggggcggcgggagctgtagtggtagcgct
ggaggcggcggcagtggctctctcctttcccagcgcggaggccgagccggggcccttcat
ctgcggcggttggagagcgggggcgccaagagcgctgaggagtcggagtgtgagagtgaa
gatggcatcgagggcgatgctgttctctcggattatgaaagtgcagaagactcagaaggt
gatgaaggggagtacagtgaagaggaaaactccaaagtggagctgaaatcagaagccaat
gatgctgctaattcttcagcaaaagacgagaagggggaagaaaagcctgataccaaaggc
actgtgactggagagaggcaaagtggggatggacaggagagcacagagcctgtggagaac
aaagttggtaaaaatggccctaagcatttggatgatgatgaagatcggaagaacccagca
tacataccccggaaagggctcttttttgagcatgatcttcgagggcagactcaggaggag
gaagtcagacccaagggacgtcaacgaaagctgtggaaggatgagggtcgctgggagcat
gacaagtttcgggaagatgaacaggctccaaagtcccgacaggagctcattgctctttat
ggctatgatatccgctcagctcacaatcctgatgacatcaaaccccgaagaattcggaaa
cccaggtttgggagtcctccacaaagagatccaaactggattggggagcggccaaataag
tcccatcgccaccagggtcctgggggcaccttaccaccaaggacatttatcaacaggaat
gctgtaggtactggccgcatgtctgctgccaggaattactctcgatctggaggcttcaag
gaaggttgtgctggttttaggcctgtggaagctggcgggcagcatgctggcaggtctggt
gagactgttaaacacgagaccagttaccggtcacggcgcctggagcagactccagtaagg
gatccatctccagaagcagatgctcaagtgcttggcagtcctgagaaggaagaggcagcc
ccagagataccaaatcctgctcctgacactgcaccaccagctcctgacagacctattgag
aagaaatcctattcccgggcaagaagaaccagggtcaaagctggagatgcagtcaaggtt
gcagaggaggtgccccctccacctgaagggctgaccccagcacctccagtcccagaaact
acgcctcctccgcctgctaagactgggaactgggaggctccagtggattctactacaggt
ggacttgaacaagatgtggcacaactaaatataacagaacagaattggagcccagggcag
ccttcattcctgcaaccacgtgagcttcggggtatgcccaaccacatacacatgggagca
ggacctccacctcagtttaaccggatggaagaaatgggtgtccagggtgggcgagccaaa
cgctattcatctcaacggcaaagacctgtgccggagccgcctgcccctcctgtgcacatc
agtatcatggagggacattactatgatccattgcagttccagggaccaatctatacccat
ggtgacagccctgccccactgcctcctcagggcatgattgtgcagccagaaatgcacctt
ccccacccaggtttacatccccaccagacaccggcacctctgcccaatccaggcctctat
cccccaccagtgtccatggctccaggacagccaccacctcagcagttgcttgctcctacc
tacttttctgctccaggcgtcatgaactttggtaatcccagttacccttatgctccaggg
gcactgcctccccccccaccgcctcatctatatcctaacacacaggccccatcgcaggta
tatggaggagtgacctactataaccccgcccagcagcaggtgcagccaaagccctcccca
ccccggaggactccccagccagtcaccatcaagcccccaccacctgaggttgtaagcagg
ggttccagttaa
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