Phocoena sinus (vaquita): 116745760
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Entry
116745760 CDS
T07759
Symbol
RPA1
Name
(RefSeq) LOW QUALITY PROTEIN: replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu03030
DNA replication
psiu03420
Nucleotide excision repair
psiu03430
Mismatch repair
psiu03440
Homologous recombination
psiu03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
116745760 (RPA1)
03420 Nucleotide excision repair
116745760 (RPA1)
03430 Mismatch repair
116745760 (RPA1)
03440 Homologous recombination
116745760 (RPA1)
03460 Fanconi anemia pathway
116745760 (RPA1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
psiu03000
]
116745760 (RPA1)
03032 DNA replication proteins [BR:
psiu03032
]
116745760 (RPA1)
03400 DNA repair and recombination proteins [BR:
psiu03400
]
116745760 (RPA1)
Transcription factors [BR:
psiu03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
116745760 (RPA1)
DNA replication proteins [BR:
psiu03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
116745760 (RPA1)
DNA repair and recombination proteins [BR:
psiu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
116745760 (RPA1)
MMR (mismatch excision repair)
116745760 (RPA1)
DSBR (double strand breaks repair)
HR (homologous recombination)
116745760 (RPA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
DUF8001
Motif
Other DBs
NCBI-GeneID:
116745760
NCBI-ProteinID:
XP_032472681
Ensembl:
ENSPSNG00000020931
LinkDB
All DBs
Position
20:complement(12948027..13004079)
Genome browser
AA seq
617 aa
AA seq
DB search
MVGHLSEGAIAAIMQQGDTTIKPILQVINIRPIATGNNPPRYRLLMSDGLNTLSSFMLAT
QLNRLVEEERLSSNCICQINRFIVNTLKDGRRVVILMELEVLKSAEEVGLKIGNPVPYNE
GHGQQPAVPPPVSAASPPASRPQQQNGSSGVGSTVSKTFGASKTFGKPGGPSLGNSSGGT
QAKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSIELVDESGEIRATAFNE
QVDKFFPLIDVNKVYYFSKGTLKIANKQFRAVKNDYEMTFNNETSVMPCEDGHHLPTVQF
DFTGVGDLENKPKDSLVDIIGICKSYEDVTKITVKSNNREVSKRNIYLMDMSGKVVNATL
WGEDADRFDGSRQPVMAIKGARVSDFGGRSLSVLSSSTVIVNPDIPEAYKLRGWFDSEGQ
ALAGVSISDLKSGGIGGSNTNWKTLYEVKSENLGQGDKPDYFSSVATVVYLRKENCMYQA
CPTQDCNKKXIDQQNGLYRCEKCDSEFPNFKYRMILSANIADFQENQWVTCFQESAEAIL
GQXTAYLGELKEKNEQAFEEVFQNANFRSFTFRIRVKLETYNDESRIKATVMDVKPVDYR
EYGRRLIVSIRRNAAAM
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atggtgggccacctgagcgagggggccattgcggccataatgcaacagggagatacaacc
ataaaacccattctccaagtcattaacatccgtcccattgctacagggaataatccaccc
cgttatcgactgcttatgagcgatggattgaatactctgtcttctttcatgttggcaaca
cagttgaaccgtcttgttgaggaagaacgattgtctagcaactgtatttgccagattaac
cgatttattgtgaacactctgaaagatggaaggagagtggttattttgatggagttagaa
gttttgaaatcagctgaagaagttggattaaagattggcaatccagtgccctataatgaa
ggacatggacagcagccagcagttcctcctccagtctcagcagccagtccaccagccagc
aggccccagcaacagaatgggagctcgggagtgggttctactgtatctaagacttttggt
gcctcaaagacatttggaaaacctggaggtcccagcctagggaacagctccgggggaaca
caggccaaagtggtacccattgccagcctcaccccttaccagtccaagtggactatttgt
gctcgtgttaccaacaaaagtcagatccgtacctggagcaattcccgaggggaagggaaa
cttttctctatagaactagttgatgagagtggcgaaatcagagcgactgctttcaacgag
caagtggacaagttctttcctcttattgatgtgaacaaggtctattacttctctaaaggc
accctgaagattgccaacaaacagttccgagccgtcaaaaacgactatgagatgaccttc
aataatgagacttctgtcatgccctgtgaagatggtcatcatttacccacagtccagttt
gatttcacaggggttggtgacctagagaacaagcctaaagactcacttgtagacataatc
ggaatctgcaagagctatgaagatgtcactaaaatcacagtgaagtctaacaacagagaa
gtctctaagaggaatatctatttgatggacatgtcagggaaagtggtgaatgctactctg
tggggagaagatgctgatagatttgatggttctagacaacccgtgatggcgatcaaagga
gccagagtttctgattttggtggacggagcctctctgtactgtcttcgagtaccgtcatt
gtgaaccctgacatcccagaggcctacaagcttcgtggatggtttgattcggaaggacaa
gccttagctggcgtttccatctctgatctaaagagtggaggaataggagggagcaacacc
aactggaaaactttatatgaggttaaatcagagaacttgggccaaggtgacaagcccgac
tattttagctctgtggcgacagtggtgtatcttcgcaaagagaactgtatgtaccaggcc
tgcccaactcaggactgcaataagaagntgattgatcaacagaatggattgtaccgctgc
gagaagtgtgacagtgaatttcccaatttcaagtaccgcatgatcctgtcagcaaatatt
gctgactttcaagagaatcagtgggtcacatgtttccaggagtctgcagaggccatcctt
ggacaangcactgcttaccttggggagttaaaagagaagaacgagcaagcgtttgaggaa
gttttccagaatgccaacttcagatcttttacattcaggatcagggtcaaattggagacc
tacaatgatgagtctcgaattaaggccactgtgatggacgtgaagcccgtggactacaga
gaatatggcagaaggttgatcgtgagcatcaggagaaacgctgcggcgatgtga
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integrated database retrieval system
