KEGG   Phocoena sinus (vaquita): 116745817
Entry
116745817         CDS       T07759                                 
Symbol
PER1
Name
(RefSeq) period circadian protein homolog 1 isoform X1
  KO
K21944  period circadian protein 1
Organism
psiu  Phocoena sinus (vaquita)
Pathway
psiu04710  Circadian rhythm
psiu04713  Circadian entrainment
Brite
KEGG Orthology (KO) [BR:psiu00001]
 09150 Organismal Systems
  09159 Environmental adaptation
   04710 Circadian rhythm
    116745817 (PER1)
   04713 Circadian entrainment
    116745817 (PER1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:psiu03400]
    116745817 (PER1)
DNA repair and recombination proteins [BR:psiu03400]
 Eukaryotic type
  Check point factors
   Other check point factors
    116745817 (PER1)
SSDB
Motif
Pfam: Period_C Per3-like_PAS-A bHLH_PER PAS_3 PAS_11 PAS
Other DBs
NCBI-GeneID: 116745817
NCBI-ProteinID: XP_032472761
Ensembl: ENSPSNG00000022172
LinkDB
Position
20:8392790..8407807
AA seq 1267 aa
MSGPLEGADGGGDPRPGESFCPGGAPSPGPPQHRPCPGPSVADDTDANSNGSSGNESNGP
ESRGASQRSSHSSSSGNGKDSALLDTTESSKSTNSQSPSPPSSSIAYSLLSASSEQDNPS
TSGCSSEQSARARTQKELMTALRELKLRLPPERRGKGRSGTLATLQYALACVKQVQANQE
YYQQWSLEEGEPCAMDMSTYTLEELEHITSEYTLRNQDTFSVAVSFLTGRIVYISEQAGV
LLRCKQDVFRGARFSELLAPQDVGVFYGSTAPSRLPTWGTGASAGSGLKDFTQEKSVFCR
IRGGPDRDPGPRYQPFRLTPYVTKIRVADGAPAQPCCLLLAERVHSGYEAPRIPPDKRIF
TTRHTPSCLFQDVDERAAPLLGYLPQDLLGAPVLLFLHPEDRPLMLAIHKKILQLAGQPF
DHSPIRFCARNGEYVTMDTSWAGFVHPWSRKVAFVLGRHKVRTAPLNEDVFTPPVPSPAL
SLDPDIQELSEQIHRLLLQPVHSPSPTGFCGVGQVTSPGPLLSPGSSSASNGGDAEGPGP
PAPVTFQQICKDVHLVKHQGQQLFIESRARPLPQPHVPATGTFKAKTLPCQSADPELEVA
PALTQAPLALAPEEAERKEASSCSYQQINCLDSILRYLESCNLPSTTKRKCTSSSSCTAS
SASDEDRQRAGAVSVGAEKDPSAVLSGEGAAPLKEPVVGGGALSPLALANKAESVVSVTS
QCSFSSTIVHVGDKKPPESDIIMMEDLPGLPPGPAPSPAPSPTVAPDPATGAYRPVGLTK
AVLSLHTQKEEQAFLSRFRDLGRLRGLDGSSTAPSGPGCRHGPAAPGRRHHCRSKAKRSR
QHQNPQAEAPCHVSHPSPVPSSAPWPPPAATPPFPAVVQPCPLPAFSPRGGPQPLPPVPT
SVSPAAFPAPLVTPVVALVLPNYLFPAPPTYPCGAPQAPASHSPSPSLPLPPPSPPRRPD
SLLFNSRCSSPLQLNLLQLEESPRVEGSSAARPPPSEETADPAARPVEITESSNQDALSG
SSDLLELLLQEDSRSGTGSAASGSLGSGSGSGSHEGSSTSASITRSSQSSHTSKYFGSVD
SSEAEAGAARARAEPGDQVIKYVLQDPIWLLMANADQHVMMTYQVPSRDMASVLKQDRER
LRAMQKQQPRFSEDQRRELGAVHSWVRKGQLPRALDVMACVDCGSSTQDPGHPDDPLFSE
MDGLGLEPMEEGGGEAGGGGGEGEGGDEAQAQAGATVSSSQDLAMEEEGQGGSSSSPALP
AAENGTS
NT seq 3804 nt   +upstreamnt  +downstreamnt
atgagcggccccctcgaaggggctgatgggggaggggaccccaggccgggggaatccttt
tgtcctggaggggctccatcccctgggcctccacagcatcgaccttgtcctggccccagc
gtggctgacgacacggatgccaacagcaatggctccagcggcaatgagtccaatggaccg
gagtccaggggtgcatctcagcggagctcacatagctcctcctcaggcaatggcaaggac
tcggcccttctggacaccactgaaagcagcaagagcacaaactctcagagcccatcccca
cccagcagttccattgcctacagcctcctgagtgccagctcagagcaggacaacccgtct
accagtggctgcagcagtgaacagtcagctcgggcaaggacccagaaagaactcatgacg
gcgctgcgggagctcaagcttcggctgccaccagagcgcaggggcaagggccgctctggg
accctggccacgctgcagtacgcactggcctgtgtcaagcaggtgcaagccaaccaggaa
tactaccagcagtggagcctggaggagggcgagccttgtgccatggacatgtccacctac
actctggaggaactggagcacatcacatctgagtacacgcttcgcaaccaggatactttc
tccgtggctgtctccttcctgacaggccgcatcgtctacatttctgagcaggcaggtgtc
ctgctgcgctgcaagcaggatgtgttccgcggtgcccgcttctcagagctcctggctccc
caggatgtgggcgtcttctatggttccactgccccatctcgcctgcccacctggggcacg
ggggcctcggcaggttcaggcctcaaggacttcacccaggagaagtctgtcttctgccgt
atcagagggggtcccgaccgagatcccgggcctcggtaccagccattccgcctaacccca
tatgtgaccaagatccgggtcgctgatggggcccctgcacagccgtgctgcctgctgctt
gcagagcgcgttcactctggttatgaagctccccggattccccccgacaagaggatcttc
actacaaggcacacgcccagctgcctcttccaggatgtggatgaaagggccgccccgttg
ctgggctacctcccccaggacctcctgggggccccagtgctccttttcctgcatcccgag
gaccgacccctcatgctggccatccacaagaagatcctgcagctggctggccagcccttt
gaccactcccctatccgcttctgcgcccggaatggggagtacgtcaccatggacaccagc
tgggctggcttcgtgcacccctggagccgcaaggtggcctttgtgttgggccgccacaaa
gtacgcacggcgcccctgaatgaagacgtgttcactcccccagtccccagtcccgctctc
tccctggaccctgatatccaggagctctctgagcagatccaccggctgctgttacagcct
gtgcacagccccagccctaccgggttctgtggagtcggccaggtgacttccccaggccct
ctcctcagccctggctcctccagtgccagcaacgggggtgacgccgagggacctgggcct
cctgcgccggtgaccttccagcagatctgtaaggatgtgcacctggtgaagcatcagggg
cagcagctttttattgagtcccgggcccggcctctgccccagccccatgtccctgctaca
ggcacgttcaaggccaagacacttccctgccaatccgcagacccagagctggaggtggcc
cctgctctgacccaggccccgctagccttggctcctgaggaggctgagcggaaagaagcc
tccagttgctcctaccagcagatcaactgcctggacagcatcctcaggtacctggagagc
tgcaacctccccagcacgaccaagcgcaaatgcacctcctcctcgtcctgcaccgcctct
tcggcctccgacgaggacaggcagcgggcgggagcggtctctgtgggggccgagaaagat
ccatcggcagtgctgtctggggagggggctgcccctctgaaggagccggtggtgggagga
ggcgccctgagcccgctcgccctggccaataaggcggagagtgtggtgtccgtcaccagt
cagtgtagcttcagctccaccatcgtccatgtgggagacaagaagcccccggaatcggac
atcatcatgatggaggacctgcctggcctgcctcccggcccagctcccagcccagccccc
agccccacggtggcccctgacccagccacaggtgcctaccggccagtgggcctgaccaag
gctgtgctgtccctgcacacccagaaggaggagcaggccttcctcagccgtttccgcgac
ctcggcaggctgcgtggacttgacggctcctccacggccccctcgggccccggctgccgc
cacggccccgcagcccccggccgccgccaccactgccgatccaaagccaagcgctcccgc
cagcaccagaaccctcaggccgaagccccctgccacgtctcccacccatcacctgtgcca
tcctctgccccctggcccccaccagcagccacaccgcccttcccggctgtggtccagccc
tgccccctccccgcattctcccccagaggaggcccccagcctctccctcctgtgcccaca
tctgtgtctcctgcggctttccctgccccgctggtgactccagtggtggctttggtgctc
cctaactatcttttccctgccccacccacctacccctgtggggcaccccaggcccccgcc
tcccactccccttctccgtccctgcccctgccgccccccagccctccccgccgccccgac
tctctgctcttcaactcgagatgcagctccccgctccagctaaatctgctgcagcttgag
gagtccccccgtgtcgaggggagtagtgctgcgcgcccccctcccagcgaggagactgcc
gacccagcggccagaccggtggagataactgagtcctccaaccaggacgcgctctcgggc
tccagcgacctgctggagttgctgctgcaggaggactcacgctctggcacgggctctgct
gcctcgggctccttgggctctgggtctggctcaggctcccacgaggggagcagcacctca
gccagcatcacgcgcagcagtcagagcagccacacgagcaagtacttcggcagcgtcgat
tcttccgaggctgaggctggggctgcccgtgccagggctgagcccggggaccaggtcatt
aagtacgtgctccaggatcccatctggctgctcatggccaatgctgaccagcatgtcatg
atgacctatcaggtgccctccagggacatggcctctgtgctgaagcaggaccgggagcgg
ctccgggctatgcagaagcagcagcctcggttctcagaggaccagcggagggaactgggt
gctgtgcactcctgggtccggaagggtcaactgcctcgggcccttgatgtgatggcttgt
gtggattgcggtagcagcacccaagaccctggccaccctgatgacccactcttctcggaa
atggatggactagggctggagcccatggaggagggtggaggcgaggcgggtggcggtggt
ggtgagggcgagggcggtgatgaggcccaggcccaagctggggccacggtctcaagctct
caggacctggccatggaggaggagggacaaggtgggagctcatccagtccagccttacct
gccgcagaaaatggcaccagctag

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