Phocoena sinus (vaquita): 116746213
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Entry
116746213 CDS
T07759
Symbol
TMC8
Name
(RefSeq) LOW QUALITY PROTEIN: transmembrane channel-like protein 8
KO
K21988
transmembrane channel-like protein
Organism
psiu
Phocoena sinus (vaquita)
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
psiu02000
]
116746213 (TMC8)
03037 Cilium and associated proteins [BR:
psiu03037
]
116746213 (TMC8)
Transporters [BR:
psiu02000
]
Other transporters
Pores ion channels [TC:
1
]
116746213 (TMC8)
Cilium and associated proteins [BR:
psiu03037
]
Other cilia and associated proteins
Stereociliary proteins
116746213 (TMC8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TMC
WHD_DUF4423_like
DUF4658
Motif
Other DBs
NCBI-GeneID:
116746213
NCBI-ProteinID:
XP_032473401
Ensembl:
ENSPSNG00000021800
LinkDB
All DBs
Position
20:complement(49708656..49717234)
Genome browser
AA seq
721 aa
AA seq
DB search
MLRQWSVQASGEPEPEPAGEELWEQEMERLCSSQEPVRVLPYAMVDKRFIRLREPEGVKT
SCWQQWRRRQQTAGRRLGEAARRLXRGCGLWEGALYEIGGLFGTESXSYFTFLRFLLLLN
LLTLLLTTASSCCPLTWLRPPDRGPALNFTLQCPGGHQPQTGVPKFNNLLWNVLTGRAFN
NTYLFYGAYRAGPESSSIYSIRLAYLLSPLACLLLCFCGILRQMVKGLPQKMFLGQDYRS
PLSAKVFSSWDFCIQGQEAATIKKHEISNEFKVELEEGRHLLMVQHQTRAQRACHLLTYL
RVNILIGLLVVGAISAIFWATKYSQDNKEVPGVLFLLLQYLPPGVHRPGQLSGSLLFVFL
VQLENYPPNTEVNLTLIWCVVLKLASLGMFSFSLGQTXLCFGRNKTSCESYGYNACDYQC
WENSVGVELYKLSIFNFLLTVAFTFLVSLPRRLLVERFSGRFWAWLDREEFLLPKNVLDI
VEGQTVTWMGLFYCPLLPLLNSIFVFLTFYIKKYTLLRNSRASPRPFRASSSIFFFQLVL
ILGLLLAAVPLGYVVSSIRSSWDCGLFTNYSAPWQVVPELVALRLPPPSQRILHYLGSHA
FSFPLLILLSLVLTVCVSQSQASARAIRGLRKQLVWQVQEKWHLVDDLSRLISEPGSGDS
LGPESPHSRGSRPRSFCPGFPCPGSPGPRAPRPEPSLEDPAGLCGVRVPVRSCRFPSGSE
L
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atgctgaggcagtggtcggtgcaggcctcaggggagccagaacctgagccggccggcgag
gagctgtgggagcaggagatggagcggctgtgctcctcccaggaacctgtgcgggtgctg
ccctacgccatggtggacaagcgcttcatccggctgcgggagcctgagggggtgaagacc
tcgtgctggcagcagtggcgtcgcaggcagcagactgcaggacggcgcctgggggaggca
gcacggcggctgngccggggctgtggtctctgggagggggctctctacgagatcggaggc
ctcttcggcacggaatcctagtcctacttcaccttccttcgcttcctgctgctgcttaac
ctcctgacccttcttctgaccacagcttcgtcctgctgccccctgacctggctccgcccc
cctgacagaggacctgctctgaacttcaccctccagtgtcctggtggccaccaaccccag
actggtgttcccaagttcaacaatctactttggaatgttttaaccggcagggccttcaac
aacacctatctcttttacggcgcgtaccgagcggggcctgagagcagctcaatatacagc
atccgcctggcctacttactgagcccactggcctgcctgctcctctgcttctgtgggatt
ctacggcagatggtgaaggggctgccacagaagatgttcctgggccaggactacaggtca
cctctcagcgccaaggtcttctcttcctgggacttctgcatccaggggcaggaggcagcc
accatcaagaagcatgagatcagcaacgagttcaaggtggagctggaggaggggcgtcac
ttgctgatggtacagcatcagacccgggctcagagggcctgccacctgctcacctacctg
cgggtcaacatcctcatcgggcttctggtggttggggccatcagtgctatcttctgggcc
accaagtactcgcaggacaacaaggaggtgccaggagtcctgtttctgctgctccagtac
ctgccccctggggtccatcgccctggtcaactttctgggtccctgctgtttgttttcctg
gtgcagctggaaaactaccctcccaacactgaggtcaacctcacccttatctggtgtgtg
gtgctgaagctggccagcctgggaatgttctccttctcgctgggccagactntgctgtgc
tttggcagaaacaagaccagctgtgagtcctacggctacaacgcatgtgactaccagtgc
tgggagaactcggtgggggtggagctgtacaaactcagcatcttcaacttcctcctcacg
gtggccttcaccttccttgtcagcctgcctaggaggctgctggtggagcggttctcgggc
cggttctgggcctggctggaccgggaggagttcctgctgcccaagaacgtgctggacatc
gtggagggacagacggtcacctggatgggcctcttctactgccccctgctgcccctgctt
aacagcatcttcgttttcctcaccttctatatcaagaagtacaccctgctgaggaactcc
agggcatcccctcggccattccgcgcctccagctccatcttcttcttccagctggtgctc
atcctgggcctgcttctggccgctgtgcccctgggctatgtggtcagcagcatccgctcc
tcctgggactgtggcctcttcaccaactactcagccccctggcaggtggtcccagagctg
gtggccctccggctcccaccccctagccagcgcatcctccactacctgggctcccacgcc
ttcagcttccccctcctcatcctgctcagccttgtcctgaccgtgtgcgtctcccagtcc
caggccagcgcgagggccatccgggggctccggaagcaactggtgtggcaagtgcaggag
aagtggcacctggtggatgacctgtcgcggctgatttcggagccgggctccggcgactct
ctggggcctgagtcccctcactcccgaggttcgcgcccgagatccttctgccccggattc
ccgtgcccgggctccccgggacccagggcccccaggccggaaccctcccttgaagatcct
gccgggttgtgcggtgtccgggtccccgtccgtagctgccgcttccccagcggttcggag
ctgtag
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