Phocoena sinus (vaquita): 116747492
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Entry
116747492 CDS
T07759
Symbol
HDAC6
Name
(RefSeq) histone deacetylase 6 isoform X1
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu04613
Neutrophil extracellular trap formation
psiu05014
Amyotrophic lateral sclerosis
psiu05034
Alcoholism
psiu05203
Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09150 Organismal Systems
09151 Immune system
04613 Neutrophil extracellular trap formation
116747492 (HDAC6)
09160 Human Diseases
09161 Cancer: overview
05203 Viral carcinogenesis
116747492 (HDAC6)
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
116747492 (HDAC6)
09165 Substance dependence
05034 Alcoholism
116747492 (HDAC6)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
psiu01009
]
116747492 (HDAC6)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psiu03019
]
116747492 (HDAC6)
04131 Membrane trafficking [BR:
psiu04131
]
116747492 (HDAC6)
03036 Chromosome and associated proteins [BR:
psiu03036
]
116747492 (HDAC6)
Enzymes [BR:
psiu01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
116747492 (HDAC6)
Protein phosphatases and associated proteins [BR:
psiu01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
116747492 (HDAC6)
Messenger RNA biogenesis [BR:
psiu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
116747492 (HDAC6)
Membrane trafficking [BR:
psiu04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
116747492 (HDAC6)
Chromosome and associated proteins [BR:
psiu03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
116747492 (HDAC6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
zf-UBP_var
LysX_preATP_grasp
Motif
Other DBs
NCBI-GeneID:
116747492
NCBI-ProteinID:
XP_032475631
Ensembl:
ENSPSNG00000021767
UniProt:
A0A8C9ED07
LinkDB
All DBs
Position
X:43362924..43382653
Genome browser
AA seq
1148 aa
AA seq
DB search
MTSTGQDSTTTRQRRSRHNPHPPAHDSSVTSVRPQTSKRGVKKGAVLRSSPNLAEVKKKG
RMKKLSQAAEQDLVVGLQGLDLNREARTLSGTGLVFDEQLNEFHCLWDDSFPEGPERLHA
IKEHLIQEGLLDRCVSFQARFAEKEELMLVHSLEYIDLMETTQYMNEGELRVLADTYDSV
YLHPNSYTCACLASGSVLRLVDAVLRAEIRNGMAIIRPPGHHAQHSLMDGYCMFNHVAVA
ARYAQQKHDIQRVLIVDWDVHHGQGTQFTFDQDPSVLYFSIHRYEQGRFWPHLTASNWST
TGFGEGQGYTINVPWNQVGMRDADYIAAFLHVLLPVSLEFQPQLVLVAAGFDALQGDPKG
EMAATPAGFAQLTHLLMGLAGGKLILSLEGGYNLHSLAEGVSASLHTLLGDPCPVLEFPG
APCPSAQASISCALEALEPFWEVFVRSAETLEEEDTVEGDDVEKEAEGPWQPPEFPILTW
PVLQARTGLVYDPQMMDHYNLWDNHHPETPQRIKRIMHHLEELGLAGRCLALPARPATDA
ELLACHSAEHVDRLRATEKMKTRELHREGANYDSIYICPSTFTCAQLAAGAACRLVEAVL
AGEVLNGIAVVRPPGHHAERDAACGFCFFNSVAVAARHAQAVSGHALRILIVDWDVHHGN
GTQHIFEEDPSVLYISLHRYDHGTFFPMGDEGASSQIGQAAGTGFTVNVAWNGPRLGDAD
YLVAWHRLVLPIAYEFNPELVLVSAGFDAARGDPLGSCQVSPEGYAHLTHLLMGLANGRI
ILILEGGYNLTSISESMAACTHSLLGDPPPLLTLLRPPLSGALASISETIQVHRRYWCSL
RVTKVKDKEGPSSSKLITKKAPQAANPLSAKGMTMPEGNILEAGTGKVTSATSVKESTPG
QTTSETAVMEFTQDQSSETAMGGAAALNQATSEAATGDATLDQTTSEEAVGGAELIQSPP
ASCTDNQTPPASPMQGATTQISPSKLTGNLSTLELDKAQEPPEEEELLGEAAGGQDMNES
VLMHVTGDHADTDQAMFYAVTPLPWCPHLVAVCPVPEAGLDVTQPCQDCGALQENWVCLS
CYQVYCSRYINAHMLQHHEGSGHPLVLSYADLSTWCYHCQAYVHHKALVAVKNIAHQNKF
GENMLHSH
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgacctccaccggccaggattccaccacaaccagacagcgaaggagtaggcacaatccc
catccccccgcccacgactccagcgtcacctcggtgaggccccagacctcgaagcgaggt
gttaaaaagggtgccgtactccgctccagccccaatctagcggaggtaaagaagaaaggc
agaatgaagaagcttagtcaagcagccgagcaagacctagtcgtggggctgcaagggctg
gatctgaaccgggaggccaggacactgtctggcactggcttggtgttcgatgagcagcta
aatgaattccactgcctctgggatgacagcttccctgaaggccctgagcggctccatgcc
atcaaggagcatctgatccaggagggcctcctggatcgctgtgtgtcctttcaggcccga
tttgccgaaaaggaggagctgatgttggttcacagtctagaatacattgatctgatggag
acgacccagtacatgaatgagggggaactccgtgtcctagcagatacctatgactcagtt
tatctgcatccgaactcatacacctgcgcctgcctggcctcaggctccgtcctcaggcta
gtggatgcagtcctgagggctgagatccggaatggcatggcgatcatcaggcctcctgga
caccatgcccagcacagtctcatggacgggtattgcatgttcaaccacgtggctgtggct
gcccgctatgctcaacagaagcatgacattcagagggtccttatcgtggattgggatgtg
caccacggtcaaggaacacagttcacctttgaccaagaccccagtgtcctctatttctcc
atccaccgctacgagcagggtcggttctggccccaccttacagcctccaactggtccacc
acaggttttggcgaaggccagggatacaccatcaatgtgccttggaaccaggtggggatg
cgagatgccgactacatcgccgctttcctgcacgtcctgctgccagtttcccttgagttc
cagccccagctggtcctggtagctgctggatttgatgccctccaaggggaccccaagggc
gagatggccgccactccggcagggttcgcccagctaacccacctgctcatgggtctggca
ggaggcaagctgatcctctcactggagggtggctacaacctccactccctggctgagggc
gtcagcgcctcgctccacacccttctgggagacccttgccccgtgctggagttccctggc
gccccttgcccgagtgcccaggcgtctatctcctgtgctctggaagcccttgagcccttc
tgggaggtcttcgtgagatcagctgagaccctggaggaggaggacactgtggagggggac
gatgtggagaaggaggcggagggaccatggcagccccctgagttcccaatcctgacgtgg
ccggtgctgcaggctcgcacagggctggtctatgacccacagatgatggatcactacaac
ttgtgggacaaccaccaccccgagacgcctcagcgcatcaaacgtatcatgcatcacctg
gaggagctgggtcttgccgggcgctgtctcgccctgcccgcacgtccagccacggacgct
gagctgctcgcctgccacagtgctgagcacgtggatcgtctgcgggccacggagaagatg
aagacccgggagctgcaccgcgagggcgccaactatgactccatctacatctgccccagc
accttcacctgtgcgcagctggctgctggcgccgcctgccgcctggtggaggctgtgctg
gcgggagaggttttgaatggcattgctgtggtgcgtccccccggtcaccatgcagagcgg
gatgccgcttgcggtttctgcttcttcaactctgtggctgtggctgctcgccatgcccag
gccgtcagtgggcatgcgctgcggatcctgatcgtggactgggacgtccatcatggtaat
ggaactcagcacatatttgaggaggaccccagcgtgctgtacatttctctgcaccgctat
gatcatggcaccttctttcctatgggggacgagggcgccagcagccagataggtcaggct
gcaggcacgggcttcaccgtcaacgtggcctggaatgggccccgcctgggtgacgccgac
tacttggttgcctggcatcgtctggtgcttcccattgcctatgagtttaacccggaactg
gtgctggtctcagctggcttcgatgctgcccggggggacccactgggcagctgccaggtg
tcgcctgagggctatgcccacctcacccacctgctgatgggcctggccaatggccgcatt
atccttatcctagagggtggttataacctgacatccatctcggagtccatggccgcctgc
acccactccctccttggggacccgccacccctgctgaccctgctgcggcccccactgtca
ggggccctggcctcgatctccgagaccatccaagtccatcgcagatactggtgcagtttg
cgggtcacaaaggtcaaagataaagagggaccctccagttctaagttgatcaccaagaag
gcaccccaggcagccaatcctttgtcagccaaggggatgaccatgccagaagggaacatt
ctggaggcaggcacagggaaggtcacctcagcaacatctgtgaaagagtccactccaggc
cagactacgtcagagacagctgtgatggagttcactcaggaccagtcatcagagacagcc
atgggaggagctgctgcgctgaaccaggccacctcagaggcagccacaggggatgccacg
ctggaccagaccacctcggaggaggctgtcgggggagctgagctgatccaaagccctcca
gcctcatgcactgacaatcagactcctccagcgtcacccatgcaaggagccacaacccag
atatcccccagtaaactgactggaaatctcagcaccttggaactagacaaggcacaggaa
cccccagaagaggaggagctactaggagaggcagctggaggtcaggacatgaatgagtca
gtactgatgcatgtcactggagaccatgctgacactgaccaagccatgttttacgctgta
acaccactgccctggtgtccccatttggtggcagtatgccctgtacctgaagcaggcctg
gatgtgacccaaccttgtcaggactgtggagccctccaggagaactgggtgtgtctgtct
tgctatcaggtctactgcagtcgttacatcaatgcccatatgctccaacaccatgaagga
tcgggacacccgctggtactcagctacgccgacctgtctacctggtgttaccactgtcag
gcctacgttcaccacaaggctctcgtagctgtgaagaacatcgcccaccagaacaagttt
ggggagaacatgcttcactcacactaa
DBGET
integrated database retrieval system
