Phocoena sinus (vaquita): 116747577
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Entry
116747577 CDS
T07759
Symbol
PTCHD1
Name
(RefSeq) patched domain-containing protein 1 isoform X1
KO
K24682
patched domain-containing protein
Organism
psiu
Phocoena sinus (vaquita)
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
psiu04990
]
116747577 (PTCHD1)
Domain-containing proteins not elsewhere classified [BR:
psiu04990
]
Other domain-containing proteins
Patched domain-containing proteins
116747577 (PTCHD1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Patched
Sterol-sensing
NPC1_MLD
Motif
Other DBs
NCBI-GeneID:
116747577
NCBI-ProteinID:
XP_032475849
Ensembl:
ENSPSNG00000022471
LinkDB
All DBs
Position
X:20002433..20058088
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AA seq
915 aa
AA seq
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MLRQVLHRGLRTCFSRLGHFIASHPVFFASAPVLISILLGASFSRYQVEESVEHLLAPQH
SLAKIERNLVNSLFPVNRSKHRLYSDLQTPGRYGRVIVTSFQKANMLDQHHTDLILKLHA
AVTRIQVPRPGFNYTFAHICILNNDKTCIVDDIVHVLEELKNARATNRTNFAITYPITHL
KDGRAVYNGHQLGGVTVHSKDRVKSAEAVQLTYYLQSINSLNDMVAERWESSFCDTVRLF
QKSNGKVKMYPYTSSSLREDFQKTSHVSERYLVTSLILVATMAILCCSMQDCVRSKPWLG
LLGLVTISLATLTAAGIINLTGGKYNSTFLGVPFVMLGHGLYGTFEMLSSWRKTREDQHV
KERTAAVYADSMLSFSLTTAMYLVTFGIGASPFTNIEAARIFCCNSCIAIFFNYLYVLSF
YGSSLVFTGYIENNYQHSIFCRKVPKPEALQEKPAWYRFLLTARFSEDTTDGEEANTYES
HLLVCFLKRYYCDWITNTYVKPFVVLFYLIYISFALMGYLQVSEGSDLSNIVATATQTIE
YTTAQQKYFSNYSPVIGFYIYESIEYWNTSVQEDVLEYTKGFVRISWFESYLNYLRKLNV
TTGLPKKNFTDMLRNSFLKAPQFSHFQEDIIFSKKYNDEVDVVASRMFLVAKTMETNREE
LYDLLETLRRLSVTSKVKFIVFNPSFVYMDRYASSLGAPLHNSCISALFLLFFSAFLVAD
SLINVWLTLTVVSVEFGVIGFMTLWKVELDCISVLCLIYGINYTIDNCAPLLSTFVLGKD
FTRTKWVKNALEVHGVAILQSYLCYLVGLIPLAAVPSNLTCTLFRKMETCRSEITRTEPV
RSRYRTMIEVSQLLASVLSPFCHFTAKFYVSKLRALNLGAMNELVGGRDSELLKIELYAK
MCIYVPYVHFPKESS
NT seq
2748 nt
NT seq
+upstream
nt +downstream
nt
atgctgcggcaggttctgcacaggggcttgaggacgtgtttctcccggctcggccacttc
attgccagtcaccctgtcttcttcgcctcggcgccggtgctcatctccatcctgctcggc
gccagcttcagccgctaccaggtcgaggagagcgtggagcacctgctggcgccccagcac
agcctcgccaagatcgagcgcaacctcgtcaacagcctcttcccggtcaaccgctccaag
caccggctctactcggacctgcagacccccgggcgctacggccgggtcatcgtcacctcc
ttccagaaagccaacatgctggaccagcatcacaccgacctgatcttaaagttgcatgct
gctgtgaccaggatccaggttccaaggcctggatttaattacacatttgctcacatatgt
atcctgaataacgataagacttgcatcgtggacgacatagtgcatgtcctggaggagcta
aagaatgctcgggccaccaaccggaccaattttgctatcacgtacccgatcactcactta
aaggacgggagggcagtttacaacgggcaccagctcggaggcgtcaccgtgcacagcaag
gaccgagtgaaatccgcagaggccgtccagctcacctactacctgcagtcaatcaacagt
ctcaacgacatggtggcagagaggtgggagtccagcttctgcgacaccgtccgactgttc
cagaaatctaacggcaaagtcaaaatgtacccttacacgtcctcctcactgagggaagat
ttccagaagaccagccacgtatcagaacgctacctggtcaccagcttgatcctggtggcc
accatggccatcctctgctgctccatgcaggactgcgtccgcagcaaaccctggctgggc
ctgctcgggctggtgaccataagcctggccactctcactgcggccgggatcatcaatctt
actggtggcaaatacaattccaccttcctgggagtccctttcgtcatgctaggtcatgga
ttatatgggacttttgaaatgttatcctcctggaggaaaactagagaagaccaacacgtt
aaagagagaactgcagcagtctatgcagactccatgctctccttttctctcaccactgcc
atgtacctggtcacctttggcataggggccagccctttcacgaacattgaggcagccagg
attttctgctgcaattcctgtatcgcaatcttcttcaactacctctatgtactctcgttt
tatggttccagcctggtattcactggctacatagaaaacaattaccagcatagtatcttc
tgtaggaaagtcccaaagcccgaggcattgcaggagaagcccgcatggtacaggtttctc
ctgacggccaggttcagcgaggacacaactgacggcgaggaagcgaacacttacgagagt
cacctattggtatgtttcctcaaacgctattactgtgactggataaccaacacctatgtc
aagccttttgtagttctcttttaccttatttatatttcctttgccttaatgggctatctg
caggtcagtgaagggtcagaccttagtaacatcgtagcaacggcgacacaaaccattgag
tacactactgcccagcaaaagtactttagcaactacagtccggtgattgggttttacata
tacgagtctatagaatactggaacactagtgtccaagaagacgtgctagaatacaccaag
gggtttgtgcgaatatcctggtttgagagctatttaaattaccttcggaaactcaacgtg
accactggcttgcctaagaaaaatttcacagacatgttgagaaattccttcctgaaagcc
ccccaattttcacattttcaagaggatatcatcttctctaaaaagtacaacgatgaggtt
gatgtagtggcctccagaatgtttttggtggccaagaccatggaaacgaacagagaagaa
ctctatgatctcctggagaccctgaggagactttctgtcacctccaaggtgaagttcatc
gtcttcaatccgtccttcgtgtacatggatcgatacgcctcctctctgggagcccccctg
cacaactcctgcatcagtgctttgttcctgctcttcttctcggcattcctggtggcagat
tctctgattaatgtctggctcactctaacggttgtgtccgtggagtttggagttataggt
ttcatgacattatggaaagtagaactggactgcatctctgtgctatgcttaatttacgga
attaactacacaattgacaactgtgctccactattatccacctttgttctgggcaaggat
ttcacaagaacgaagtgggtaaaaaatgccctggaagtgcatggggtagctattttacag
agttacctctgctatcttgttggtctgattcctcttgcagctgtgccttcaaatctgacc
tgtacactgttcaggaaaatggaaacctgcagaagtgaaatcacacgcacagagccagta
agaagcagatacaggactatgattgaagtctcccagctcctagcctcagtcctttctcca
ttctgccactttactgccaaattctatgtgtctaaattacgggctcttaacctgggggcc
atgaatgagttggtgggagggcgggactctgaactccttaaaattgaattatacgcaaaa
atgtgtatatatgttccatatgtgcattttcctaaagagagttcatag
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