Phocoena sinus (vaquita): 116747952
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Entry
116747952 CDS
T07759
Symbol
POLA1
Name
(RefSeq) DNA polymerase alpha catalytic subunit isoform X1
KO
K02320
DNA polymerase alpha subunit A [EC:
2.7.7.7
]
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu03030
DNA replication
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
116747952 (POLA1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psiu03032
]
116747952 (POLA1)
Enzymes [BR:
psiu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
116747952 (POLA1)
DNA replication proteins [BR:
psiu03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase alpha / primase complex
116747952 (POLA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B
zf-DNA_Pol
DNA_pol_B_exo1
DUF1744
DNA_pol_B_2
MTR4_beta-barrel
Motif
Other DBs
NCBI-GeneID:
116747952
NCBI-ProteinID:
XP_032476538
Ensembl:
ENSPSNG00000014536
UniProt:
A0A8C9C6Y1
LinkDB
All DBs
Position
X:21207168..21490457
Genome browser
AA seq
1336 aa
AA seq
DB search
MVTKPNNIKSMFIASAGRKTADKAVDLSKDDLLGDILQDLNTETPQITPPPVIIPKKKGS
SGASLNPFSMHTPKAAPSGKTTCPVSRKEPSLTPAPLKCAGFAGEPVLALRTVDQEESGA
MDFEDGDFDEPMETEEVDVEPVGAKTSDQEREPAEGTKHEADPGKGTVSYSASFLPDVSC
WDIDQEDDSSFSALEVQVDSSHLPLVKGADEEQVFQFYWLDAYEDPYSQPGVVFLFGKVW
IEFAQTHVSCCVMVKNIERTLYFLPRETKIDLNTGKESGTPVTMKDVYDEFDEKIAAKYK
IMKFKSKAVEKNYAFEIPDVPEKSEYLEVRYSAEMPQLPQDLKGETFSHVFGTNTSSLEL
FLMNRKIKGPCWLEVKNPQLLNQPISWCKVEAMALKPDLVNVIKDVGPPPLVVMSLSMKT
MQNAKTHENEIIAVAALVHHSFALDKAPPRPPFHSHFCVVSKPKDCIFPYDFKEGIKEKN
VKVEVAATERTLLGFFLAKIHKIDPDIIVGHNIYGFELEVLLQRINVCKVPYWSKIGRLK
RSNMPKLGGRSGFGERNATCGRMICDVEISAKELIRCKSYHLSELVQQILKTERVVIPME
NIRNMYSDSSYLLYLLEHTWKDARFILQIMCELNVLPLALQITNIAGNIMSRTLMGGRSE
RNEFLLLHAFYENNYIVPDKQLFRKPQQKPGDEDEDIDGDTNKYKKGRKKAAYSGGLVLD
PKVGFYDKFILLLDFNSLYPSIIQEFNICFTTVQRVASEAQKVTEDGEQEQIPELPDPSL
EMGILPREIRKLVERRRQVKQLMKQQDLNPDLVLQYDIRQKALKLTANSMYGCLGFSYSR
FYAKPLAALVTYKGREILMHTKEMVQKMNLEVIYGDTDSIMINTNSTNLEEVFKLGNKVK
SEVNKLYKLLEIDIDGIFKSLLLLKKKKYAALVVEPTVDGNYVTKQEVKGLDIVRRDWCD
LAKDTGNFVIGQILSDQSRDTIVENIQKRLIEIGENVLNGSVPVSQFEINKALTKDPQDY
PDKKSLPHVHVALWINSQGGRKVKAGDTVSYVICQDGSNLTGSQRAYAPEQLQKQDNLSI
DTQYYLAQQIHPVVARICEPIDGIDAVLIATWLGLDATQFRVHHYHKDEENDALLGGPAQ
LTDEEKYRDCERFKCPCPICGTENIYDSVFDGSGTDMEPSLYRCSNIDCKASPLTFMVQL
SNKLIMDIRRCIKKYYEGWLICEEPTCRNRTRHLPLQFSRNGPLCQVCMKATLRPEYSDK
SLYTQLCFYRYIFDAECALEKLTTDHEKDKLKKQFFTPKVLQDYRKLKNTAEQFLSQSGY
SEVNLSKLFADCAVRS
NT seq
4011 nt
NT seq
+upstream
nt +downstream
nt
atggtgacaaaaccgaacaatatcaagtcaatgttcattgccagtgctggaaggaaaacc
gcagacaaagctgttgacttgtccaaggatgatctgctaggtgatattctacaggatttg
aacactgagacacctcaaataactccaccacctgtaataataccgaagaagaaaggatcc
agtggagcttccctgaatcctttctctatgcacacccccaaggcagctccttcaggaaaa
accacttgcccggtctcaaggaaggagccttcgttaacccctgcccctcttaaatgtgct
ggatttgctggagagccggtgctggcattgcgtacagttgaccaggaggagtcaggggca
atggattttgaagatggcgactttgatgagcccatggaaacggaggaggtggatgtggag
cctgtgggtgccaagacctccgaccaagagagggagccagcagaggggacaaaacatgag
gcagatcctgggaaagggaccgtatcttactcagcaagttttctcccagatgtctcttgt
tgggacattgatcaggaagatgacagcagtttctcagccctggaagttcaagtggattcc
agtcacctcccactggtaaaaggggcagatgaggaacaagtatttcagttttattggctg
gatgcttatgaagatccgtacagccaaccaggtgtggtgtttctatttggcaaagtttgg
atcgaattcgcccaaacccatgtgagctgttgtgtcatggtgaaaaacattgagcgaacg
ctctacttccttccccgtgaaacgaaaattgatctaaatacagggaaagaaagtggaact
ccagttacaatgaaggatgtttatgatgaatttgatgagaaaatagcagcaaaatataag
attatgaaattcaagtccaaggcagtggaaaagaactatgcttttgagatacctgatgtt
ccagagaaatcggagtacttggaggttagatactcggctgaaatgccacagcttcctcag
gatttgaaaggagaaactttttctcatgtatttgggaccaacacatccagcttggaactg
ttcttgatgaacagaaagatcaaaggaccttgttggctcgaagtaaaaaatccacagctc
ttgaatcagccaatcagttggtgtaaagttgaggcaatggccttgaaaccggacctggtg
aacgtaattaaggatgttggtcctcctccacttgttgtcatgtctttgagcatgaagaca
atgcagaatgcaaagacacatgaaaacgagattattgctgtggcagcattggtgcatcac
agctttgcactagataaagcacccccacggcctccctttcactcacacttctgtgttgtg
tctaaaccaaaggattgtatttttccatatgattttaaagaaggcattaaggaaaagaat
gtgaaggttgaggttgctgcaacagaaagaacactgctaggttttttccttgcaaaaatt
cacaaaattgatcctgatatcattgtgggtcataatatttatgggtttgaactggaagtg
ctacttcagagaattaatgtgtgcaaagttccttactggtccaagataggtcggctgaag
cgatccaacatgccaaagcttgggggcaggagtggatttggtgaaagaaatgctacctgt
ggccgaatgatctgtgatgtggaaatttcggcaaaggaattgattcgttgtaaaagctac
catttgtctgaacttgttcagcagattctaaaaactgaaagggttgtaatcccaatggaa
aatatacgaaatatgtacagtgactcttcttatctgttgtacctgttggaacacacctgg
aaagatgccaggttcattttgcagatcatgtgtgagctaaatgttcttccattagcattg
cagatcactaacatcgctgggaacattatgtctaggacgctgatgggtggacgatccgag
cgtaacgagttcttgttgcttcatgcattttatgaaaacaactacattgtgcctgacaag
cagcttttcagaaagcctcagcaaaaaccgggagatgaagatgaagacattgatggagat
accaataaatacaaaaaaggacgtaagaaggcagcttattctggaggcttggtattggac
ccgaaagttggtttttatgataagttcattttgcttctggacttcaacagtttgtatcct
tccatcattcaggaattcaacatttgttttacaacagtgcaaagagttgcttcagaggca
cagaaagttacagaggatggagaacaagaacagatccctgagctgccagatccaagcctg
gaaatgggcattttgcccagagagatccggaaactggtagagcggagaagacaagtcaaa
caactaatgaaacagcaagatttaaatccagaccttgttcttcagtatgatattcgacag
aaggctttgaagctcacggcaaacagtatgtatggctgcctgggattttcctacagcaga
ttttatgccaaaccactggctgctttggtgacatacaaaggaagggagattttgatgcat
acgaaagagatggtacagaagatgaatcttgaagttatttatggagatacagattcaatt
atgatcaacaccaatagcaccaatctggaagaagtgtttaaattgggaaacaaggtgaaa
agtgaagtgaataagttgtataaactacttgaaatagacattgatggcattttcaagtcc
ctgctactgctgaagaaaaagaagtacgctgctctggttgttgagccaacagtggatggg
aattacgtcaccaaacaggaggtgaaaggattagatatagttagaagagattggtgtgat
cttgctaaagacactggaaactttgtcattggccagatactttcggatcaaagccgggac
actatagtggaaaacattcagaagaggttaatagaaattggagaaaatgtgctaaatggc
agtgtcccagtgagccagtttgaaattaacaaggcgttgacaaaggatccccaggattat
cctgataaaaaaagcctacctcatgtacatgttgccctctggataaattctcaaggaggc
agaaaggtgaaagctggagatactgtgtcgtatgtcatctgtcaggatgggtcaaacctc
actgggagtcagagggcctatgcacccgagcagctgcagaagcaggacaatttaagcatt
gacacccagtactacctggcccagcagatccacccagttgtggctcgaatctgtgagcca
atagatggaattgatgctgtcctcattgcaacgtggttaggacttgacgccacccaattt
agagttcatcattatcacaaagatgaagagaatgatgctctccttggtggcccagcacag
ctcacggatgaagagaaatacagggactgtgaaaggttcaaatgtccatgccctatatgt
ggaactgagaatatttatgatagcgtcttcgatggttcgggaaccgatatggagcccagc
ttgtatcgttgcagtaacatcgattgtaaggcttcgcctctgacctttatggtacagctg
agcaacaaattgatcatggacattagacgatgcattaaaaaatactacgaaggctggttg
atttgtgaggagccaacatgtcgaaatcgaactcggcaccttccccttcagttctcccga
aatggacctctttgccaagtctgcatgaaagctacacttcgaccagagtattctgataag
tccctgtacacccagctgtgcttttaccggtacatttttgatgcggagtgtgcactggag
aaacttactaccgatcatgagaaagataagttgaagaagcagttttttactcccaaagtt
cttcaggactatagaaaactcaagaacacagcagagcagttcttgtcccaaagtggctac
tccgaagtgaatctcagcaaactctttgccgattgtgctgtgcggtcctga
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