Phocoena sinus (vaquita): 116748497
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Entry
116748497 CDS
T07759
Symbol
PRPF39
Name
(RefSeq) pre-mRNA-processing factor 39 isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
psiu
Phocoena sinus (vaquita)
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
psiu03041
]
116748497 (PRPF39)
Spliceosome [BR:
psiu03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
116748497 (PRPF39)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_14
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_12
TPR_16
ANAPC5
TPR_MalT
ARM_TT21_4th
ARM_TT21
Motif
Other DBs
NCBI-GeneID:
116748497
NCBI-ProteinID:
XP_032477504
Ensembl:
ENSPSNG00000011904
UniProt:
A0A8C9C5X2
LinkDB
All DBs
Position
2:123127855..123165145
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AA seq
667 aa
AA seq
DB search
MQNSHMDEYRNSNNGSTGNSSEVVVDQPTDFSTEIMNVTEMEQSPDGSPNVNTTTEENEI
ANTVDLPVTETEANFPPEYEKFWKTVESNPQDFTGWVYLLQYVEQENHLMAARKAFDKFF
IHYPYCYGYWKKYADLEKRHDNIKQSDEVYRRGLQAIPLSVDLWIHYINFLKETLDPGDP
ETNSTIRGTFEHAVLAAGTDFRSDRLWEMYINWENEQGNLREVTAIYDRILGIPTQLYSH
HFQRFKEHIQNNLPRDLLTGEQFIQLRRELASVNGHSGDDGPPGDDLPSGIEDITDPAKL
ITEIENMRHRIIEIHQEMFNYNEHEVSKRWTFEEGIKRPYFHVKPLEKAQLKNWKEYLEF
EIENGTHERVVVLFERCVISCALYEEFWIKYAKYMENHSIEGVRHVFSRACTIHLPKKPM
VHMLWAAFEEQQGNINEARNILRTFEECVLGLAMVRLRRVSLERRLGNMEEAERLLQEAI
KNAKSNNESSFYAIKLARHLFKIQKNLPKSRKVLLEAIERDKENTKLYLNLLEMEYSGDL
KQNEENILNCFDKAIHGSLPMKMRITFSQRKVEFLEDFGSDVNKLLNAYDEHQTLLKEQD
SLKRKAENGSEEPEEKKAHTEDTTSSSTQMIDGDLQANQAAYNYSAWYQYNYQNPWNYGQ
YYPPPPT
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atgcagaattctcacatggatgagtacagaaattccaataatggcagcacaggcaacagt
tcagaggtagtggtagatcagcctactgatttcagtactgagattatgaatgttacagaa
atggaacagtcacctgatggatctcctaatgtgaacacaactacggaagaaaatgaaata
gcaaatactgtggaccttccagtgacagaaacagaagcaaatttccctccagaatatgaa
aagttttggaaaactgtagaaagtaatcctcaggattttacaggctgggtatatttgctt
cagtatgtagaacaggagaatcacttgatggctgccaggaaagcgtttgacaaatttttc
atacactatccgtattgctatggttattggaaaaagtatgcagacctcgaaaagcggcat
gacaacattaaacaatcagatgaggtgtatcgccgggggcttcaggcaatacctcttagt
gttgacctttggatacattatataaacttcttaaaagaaacattggaccctggtgatcct
gagacaaacagtacaataagaggaacttttgagcatgctgttctagctgcaggaacagat
ttccgatctgacagactctgggaaatgtatataaactgggaaaatgaacagggaaacctg
agagaagttacagctatatacgatcgtattcttggtattccaacacagctgtacagtcat
cattttcagagatttaaagaacatatacagaataacttacctagagatcttctaactggt
gaacagtttattcagctgcgaagggaattagcttctgtaaatgggcatagtggtgatgat
ggtcctcctggtgatgatctaccatcaggaattgaagacataactgatccagcaaagcta
attactgaaatagaaaacatgagacatagaatcattgaaattcatcaagaaatgtttaat
tataatgagcatgaagttagtaaaagatggacatttgaagaaggtattaaaagaccttat
tttcatgtgaaaccattggaaaaggcacaactgaaaaactggaaagaatacttagaattt
gaaattgaaaatgggactcatgaacgagttgtggttctctttgaaagatgtgtcatatca
tgtgccctctatgaggagttttggattaagtatgccaagtatatggaaaatcatagcatt
gaaggagtgaggcatgtcttcagcagagcttgcacaattcatctcccaaagaaacccatg
gtgcatatgctttgggcagcttttgaggaacagcagggtaatattaatgaagccaggaat
atcttgagaacatttgaagaatgtgttctaggattggcaatggttcgtttgagaagagta
agtttagaacgacggcttggaaatatggaagaagctgaacgtttgcttcaggaagctatt
aaaaatgccaaatcaaataatgaatcatcattttatgctatcaaactagcccgacatctt
ttcaaaatacaaaaaaaccttccaaaatcaagaaaggtgcttttggaagctattgaaaga
gacaaagagaacacaaagttatacctcaatttacttgaaatggaatatagtggtgacctc
aaacaaaatgaagaaaatatcctaaattgttttgacaaagctatacatggttcattacct
atgaaaatgagaattacgttttctcagagaaaagtggaatttcttgaagattttggttca
gatgttaataagcttctgaatgcttacgatgaacatcaaacactcctaaaagaacaggat
tctttaaaaaggaaagcagaaaacggatcagaagaaccagaggaaaagaaagcacacaca
gaagatacaacttcatcatctacgcagatgattgatggtgatttacaggcaaatcaagct
gcatataattatagtgcctggtatcaatacaattatcagaatccttggaattatggacag
tattatcctccccctccaacctga
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