Phocoena sinus (vaquita): 116748794
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Entry
116748794 CDS
T07759
Symbol
RORA
Name
(RefSeq) nuclear receptor ROR-alpha isoform X1
KO
K08532
RAR-related orphan receptor alpha
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu04659
Th17 cell differentiation
psiu04710
Circadian rhythm
psiu05017
Spinocerebellar ataxia
psiu05321
Inflammatory bowel disease
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09150 Organismal Systems
09151 Immune system
04659 Th17 cell differentiation
116748794 (RORA)
09159 Environmental adaptation
04710 Circadian rhythm
116748794 (RORA)
09160 Human Diseases
09163 Immune disease
05321 Inflammatory bowel disease
116748794 (RORA)
09164 Neurodegenerative disease
05017 Spinocerebellar ataxia
116748794 (RORA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
psiu03000
]
116748794 (RORA)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
psiu03310
]
116748794 (RORA)
Transcription factors [BR:
psiu03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
116748794 (RORA)
Nuclear receptors [BR:
psiu03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
116748794 (RORA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
116748794
NCBI-ProteinID:
XP_032478097
Ensembl:
ENSPSNG00000001296
UniProt:
A0A8C9B3L9
LinkDB
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Position
2:74262832..74442760
Genome browser
AA seq
468 aa
AA seq
DB search
MMYFVIAAMKAQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKNC
LIDRTSRNRCQHCRLQKCLAVGMSRDAVKFGRMSKKQRDSLYAEVQKHRMQQQQRDHQQQ
PGEAEPLTPTYSISANGLTELHDDLSSYIDGHTPEGSKADSAVSSFYLDIQPSPDQSGLD
INGIKPEPICDYTPASGFFPYCSFTNGETSPTVSMAELEHLAQNISKSHLETCQYLREEL
QQITWQTFLQEEIENYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVL
LKAGSLEVVFIRMCRAFDSQNNTVYFDGKYASPDVFKSLGCEDFISFVFEFGKSLCSMHL
TEDEIALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHREDGILTKLICKVS
TLRALCGRHTEKLMAFKAIYPDIVRLHFPPLYKELFTSEFEPAMQIDG
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atgatgtattttgtgatcgcagcgatgaaagctcaaattgaaattattccatgcaagatc
tgtggagacaaatcatcaggaatccattatggtgtcattacatgtgaaggctgcaagggc
tttttcaggagaagtcagcaaagcaatgccacctactcctgtcctcgtcagaagaactgt
ttgattgatcgaaccagtaggaaccgctgccaacactgtcgattacagaaatgccttgcc
gtggggatgtctcgagatgctgtaaaatttggccgcatgtcgaaaaaacaacgagacagc
ttgtacgcagaagtacagaaacaccggatgcagcagcagcagcgagaccaccaacagcag
cctggagaggccgagccgctgactcccacctacagcatctcggccaatgggcttacggag
cttcacgacgacctcagcagctacattgacgggcacacccccgagggcagcaaggcagac
tctgccgtcagcagcttctacctggacatacagccttccccggaccagtcaggtcttgat
atcaacggaatcaaaccagaaccaatatgtgactacacaccagcatcaggcttctttccc
tactgctctttcaccaatggagagacgtccccaactgtgtccatggcagaactagaacac
cttgcacagaatatatctaaatcacatctggaaacttgccaatacttgagagaagagctc
cagcagataacgtggcagacctttctgcaggaggagattgagaattaccaaaacaagcag
cgggaggtaatgtggcagttgtgtgccatcaaaattacagaagctatacagtatgtggtg
gagtttgccaaacgcattgatggatttatggaactgtgtcaaaacgatcaaattgtgctt
ctcaaagcaggttctctggaggtggtatttatcagaatgtgccgtgcctttgactctcag
aacaataccgtgtactttgatgggaaatatgctagccccgacgtcttcaaatccttaggt
tgtgaagactttattagctttgtatttgaatttggaaagagtttatgttctatgcacctg
actgaagatgaaattgcattgttttctgcatttgtcctgatgtcagcagatcgctcatgg
ctgcaggaaaaggtcaaaattgaaaagctgcaacagaaaattcagctagctcttcaacac
gtcctacagaagaatcaccgagaagatggaatactaacaaagttaatatgcaaggtgtct
acattaagagccttatgtggacgacatacagaaaagctaatggcgtttaaagcaatatac
ccagacattgtgcgacttcattttcctccattatacaaggaattgttcacttcagaattt
gagccagcaatgcagattgatgggtaa
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