Phocoena sinus (vaquita): 116748816
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Entry
116748816 CDS
T07759
Symbol
MYO5C
Name
(RefSeq) unconventional myosin-Vc isoform X1
KO
K10357
myosin V
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu04814
Motor proteins
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09140 Cellular Processes
09142 Cell motility
04814 Motor proteins
116748816 (MYO5C)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psiu03019
]
116748816 (MYO5C)
04131 Membrane trafficking [BR:
psiu04131
]
116748816 (MYO5C)
03029 Mitochondrial biogenesis [BR:
psiu03029
]
116748816 (MYO5C)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
psiu04812
]
116748816 (MYO5C)
Messenger RNA biogenesis [BR:
psiu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Cargo complex
116748816 (MYO5C)
mRNA cycle factors
P-body specific factors
116748816 (MYO5C)
Membrane trafficking [BR:
psiu04131
]
Others
Actin-binding proteins
Myosins
116748816 (MYO5C)
Mitochondrial biogenesis [BR:
psiu03029
]
Mitochondrial quality control factors
Mitochondrial dynamics
Retention of mitochondria
116748816 (MYO5C)
Cytoskeleton proteins [BR:
psiu04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Myosins
116748816 (MYO5C)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Myosin_head
DIL
IQ
Myosin_N
AAA_16
Rnk_N
AAA_22
NPHP3_N
Motif
Other DBs
NCBI-GeneID:
116748816
NCBI-ProteinID:
XP_032478125
Ensembl:
ENSPSNG00000003533
UniProt:
A0A8C9BE04
LinkDB
All DBs
Position
2:82166571..82283919
Genome browser
AA seq
1742 aa
AA seq
DB search
MAVAELYTQYNRVWIPDPEEVWKSAEIAKDYRVGAKVLRLLLEDGTELDYSVDPESLPPL
RNPDVLVGENDLTALSYLHEPAVLHNLRIRFAESKLIYTYSGIILVAMNPYKQLPIYGDA
IIHAYSGQNMGDMDPHIFAVAEEAYKQMARNNKNQSIIVSGESGAGKTVSARYAMRYFAT
VSKSSTNARVEDKVLASNPITEAVGNAKTTRNDNSSRFGKYTEISFDERNQIIGANMRTY
LLEKSRVVFQSENERNYHIFYQLCASAQQSEFKHLKLGSAEEFNYTRMGGSTIIEGVNDR
ANMIETQKTFTLLGFKEEFQMDVFKILAAILHLGNVQIIAVGNERSAVSEDGSHLEVFCE
LLGLESVRVAQWLCNRKIITNSETVVKPMTRSQAINARDALAKKIYAQLFDFIVERINQA
LQFSGKQHTFIGVLDIYGFETFDANSFEQFCINYANEKLQQQFNLHVFKLEQEEYMKEDI
PWTLIDFYDNQPVIDLIEAKMGILELLDEECLLPHGTDENWLQKLYNNFVNKNSLFEKPR
MSNTSFIIQHFADKVEYKCEGFLEKNRDTVYDMLVEILRASKFHLCANFFQENPVPSSPF
GSAITVKSAKPVVKPNNKHFRSTVGSKFRSSLYLLMETLNATMPHYVRCIKPNDEKLPFE
FDSKRIVQQLRACGVLETIRISAQSYPSRWTYIEFYSRFGILMTKQELSFSDKKEVCKVI
LHRLIQDSNQYQFGKTKIFFRAGQVAYLEKLRLDKLRQGCVVIQKHIRGWLQRKKFLRER
RAALIIQQYFRGQQTVRKAVTATALKEAWAAIIIQKYCRAYLVRSLYQLIRVATITIQAY
TRGFLARRRYRKMLEEHKAVILQKYARAWLARRRFQNIRRFVLNVQLTYRVQRLQKKLED
QNRENHGLVEKLTSLAALQAGDMEKIQKLESELDRAATHRQNYEEKGKRYKASVEEKLAK
LQKRNSELEIEKEQIQLKLQEKTDELKEKMDNLTKQLFDDVQKEERQRILLEKSFELKTQ
DYEKQIRFLKEEMKALKDEKVQLQHQLEGERVASDGLRGEVARLSKQAKTISEFEKEIEL
LQTQKIEVEKHVQSQKREMREKVSEITKQLLESYDTEDVRSRLSLEDLEHLNEDGELWFA
YEGLKKATRILESHLQSQKDCYEKEIEALNFKVEHLSQEINHLQKLFREENDINESIRHE
VTRLTSENMMIPDFKQQIAELEKQKQDLEIRLNEQAENMKGQLEELSKQLNHNQEEEGTQ
RKTIGAPNEMHTKEKEKLMDKIQEMQEASEHLRKQFETESEVKSSFRQEASRLTVEHGDL
EEVLDMKDRVIKKLQDQVKTLTKTIEKANDVHLSSGPKEYLGMLEYKREDEAKLIQNLIL
DLKPRGVVVNMIPGLPAHILFMCVRYADSLNDANMLKSLMNSTINGIKQVVKEHLEDFEM
LSFWLSNTCHFLNCLKQYSGEEEFMKNNNLRQNKNCLNNFDLSEYRQILSDVAIRIYHQF
IIIMENNIQPIIVPGMLEYESLQGISSLKPTGFRKRSSSIDDTDAYTMTSILQQLSYFYS
TMCQNGLDPEIVRQAVKQLFFLIGAVTLNSLFLRKDMCSCRKGMQIRCNISYLEEWLKDK
NLQNSLARETLEALSQAAWLLQVKKTTDSDAKEIYERCTSLSAVQIIKILNSYTPIDDFE
KRVTPSFVRKVQALLSSREDSSHLMLDTKYLFQVTFPFTPSPHALEMIQIPSSFKLGFLN
RL
NT seq
5229 nt
NT seq
+upstream
nt +downstream
nt
atggcggtggccgagctgtacacgcagtacaacagggtttggattcctgatcctgaagaa
gtttggaagtctgccgaaatagcaaaggactatagagttggtgccaaagtcctgcgtctc
ctgctggaggatggaacggagctggattattccgttgatccagaatctctgcctccactt
cggaatcctgacgtcctcgtgggtgagaatgacctcacggccctcagctatctccacgag
cccgctgtgctccacaatctcagaatccgctttgcagaatccaaactcatttacacctac
agtggaatcatcctggtggccatgaatccttacaagcagctgccgatatatggagatgcc
atcatccacgcctacagcgggcagaacatgggcgatatggacccgcacatatttgctgtg
gcagaagaggcatacaagcagatggccagaaataataaaaatcagtcaataattgtaagc
ggggagtcgggtgctggaaagacagtatctgctcgctatgccatgaggtacttcgccacc
gtcagcaagtccagcactaatgctcgcgtggaagacaaggttctggcgtcgaaccccata
actgaggctgttggaaatgccaagaccacccgcaatgacaacagcagtcggtttgggaaa
tacacagaaatcagttttgatgagagaaatcaaattataggagccaacatgagaacttac
ctgctggagaaatccagagttgtctttcaatcagaaaatgagcgaaattaccacattttc
tatcagctttgtgcgtctgcacagcagtcggaatttaaacatcttaaattggggagtgca
gaagaatttaattatacgagaatggggggcagtaccatcattgagggcgtgaatgacaga
gccaacatgatagagactcagaagaccttcacactactgggtttcaaggaagagtttcag
atggatgtttttaagatcctggcagccatcctacatctgggcaatgtgcagatcatagca
gtgggcaacgagagatcggcggtcagtgaggacggcagtcacctggaggtgttctgtgag
ctcctgggcctggagagtgtcagagtcgctcagtggctgtgtaatcgcaagatcatcaca
aactccgagacggtggtgaaacccatgaccaggtcccaggccatcaacgccagggacgcg
ctggccaaaaagatctacgctcagctgtttgacttcattgtggagagaattaaccaagcc
ttgcagttttcaggcaagcagcacacttttattggtgttttggacatttatggttttgaa
acctttgatgcgaacagctttgaacagttttgcatcaattatgctaatgaaaagctgcaa
cagcagtttaacctgcatgtctttaaacttgaacaagaagagtatatgaaggaagatatt
ccttggactctgatagatttttatgacaaccaaccagttattgacctgattgaagccaaa
atgggtattttggagttactggatgaagaatgcttgttaccacatgggactgatgaaaac
tggcttcaaaagctgtataataattttgtcaacaagaactctttgtttgaaaaacccaga
atgtcaaacacatcctttatcatccagcactttgctgataaggtagagtataaatgtgaa
ggtttccttgagaagaacagagacaccgtctatgacatgctggttgaaatcctgagagcc
agcaagtttcatctttgtgccaacttttttcaagaaaatccggttccttcttcacctttc
ggttcagcgatcacagttaaatctgcaaagccagtcgtcaagccgaacaacaagcatttc
cggagcaccgtggggagcaagttccgcagctctctgtacttgctcatggagaccctcaat
gccaccatgccccactacgttcgatgcatcaaaccaaatgatgagaaattgccctttgag
tttgactccaaaagaattgttcagcagctgcgagcctgtggcgttttagaaaccattcgc
attagtgcgcagagctacccttctaggtggacgtacatcgagttctacagccgctttggg
atcctcatgaccaagcaggagctttcattcagcgataaaaaggaggtgtgcaaagtgatt
ttacacaggctcatccaggattctaatcagtaccagtttggtaaaaccaaaattttcttc
agagcagggcaagtggcttatttagagaaactccggttggataaactgaggcagggttgt
gttgtgatacaaaagcacatccgtggctggctccagagaaaaaaattcctccgagagaga
cgagcggccctgatcatccagcagtacttccggggtcagcaaaccgtgaggaaagctgtt
accgccacagccttaaaagaagcatgggcagccataatcattcagaagtactgtcgtgcg
tatcttgtccgcagtttgtaccaactgattcgtgtggccaccatcaccatccaggcctac
acccgaggattcctggcgaggaggaggtatcgaaagatgctggaggaacacaaggctgtg
atccttcagaagtatgcccgggcgtggctggccagacgcagattccaaaatatccgacga
tttgtgctcaacgttcagcttacttacagagttcagcgtttgcagaaaaagctagaagac
cagaacagagagaaccatgggctggtggaaaagctgaccagcctggctgctcttcaggcc
ggtgacatggagaagattcagaaactggaatcagagctggacagagcagccacccacagg
cagaattatgaggagaaggggaagagatacaaggcttccgtggaagagaaattggcaaag
cttcagaagcgtaattcagaattggaaatagaaaaagaacaaatacagctgaagcttcaa
gagaagactgacgagttgaaagaaaaaatggacaacctcaccaagcagctctttgatgat
gtgcagaaagaagaacgacagagaatacttcttgaaaaaagttttgaactgaaaacgcaa
gactatgagaagcagatccggtttttgaaagaagaaatgaaagctctcaaagatgagaag
gtgcaactgcagcatcagctggagggagagcgggtcgcctctgatggcctgagaggggag
gtggcccggctgagcaagcaggcaaagacaatctctgagtttgaaaaggagatagagcta
cttcagacacagaagatagaagtggaaaaacatgtgcagtcccagaaacgggaaatgaga
gaaaaggtgtcagaaatcaccaaacaacttcttgagagctacgacactgaagatgtaaga
agcaggctctctctggaagatttggaacatttaaatgaagatggagaactttggtttgct
tatgaaggactaaagaaagcaacacgcattttggagagccatctccagtcccagaaggat
tgctacgaaaaggagattgaagctctgaacttcaaagtggagcatctaagtcaggaaatc
aaccacctgcagaaattatttagagaagagaatgacatcaatgaaagtatccgtcatgaa
gtcaccaggctaacatcggaaaacatgatgatcccagactttaaacagcaaattgcagaa
ctggagaaacagaagcaagatcttgaaatccgcctgaatgaacaagctgaaaacatgaaa
gggcaactggaagagttgtctaaacagttgaatcacaatcaggaagaggaaggaacgcaa
agaaaaaccataggagccccaaatgaaatgcataccaaagagaaagagaagctgatggat
aagattcaagaaatgcaggaggccagcgagcacttgaggaaacaatttgaaactgaaagt
gaagtcaagagtagtttccggcaggaagcatctcgcctcactgtggagcacggggatctt
gaagaagtgttagacatgaaggacagagtgattaaaaagttacaagatcaagtgaagact
ctaaccaagacaattgaaaaagccaatgatgtgcacctgtcctcaggacccaaggagtac
cttggaatgctggaatacaagagagaagatgaggccaagctcatccaaaacctcattctt
gacctgaagccccgcggtgtggtggtgaacatgatccccgggctgccagctcacatcctg
ttcatgtgtgtacgctacgcagactctctgaatgacgccaacatgctcaagtccctcatg
aacagcaccattaatggtatcaagcaggtggttaaggaacatttagaagactttgagatg
ctgtccttttggctttccaatacttgtcatttcctcaattgcttgaagcagtacagtgga
gaagaggaattcatgaagaataacaatctgcgtcagaataagaattgcttgaacaatttt
gacctttcagaatacagacagattcttagtgatgtggctattcgaatatatcatcagttc
attattataatggaaaataacattcaaccaataatagtgccaggcatgctggagtatgag
agtctgcagggcatttccagcctgaagcccacaggcttccggaagcggtcatccagcata
gatgacacggatgcctacacaatgacctccatcttgcagcagctgagctacttttacagt
accatgtgccagaacggcctggaccctgagatcgtgaggcaggcagtgaagcagctcttc
ttcttgattggggcggtcaccctgaacagcctcttcctgcgcaaggacatgtgctcttgc
agaaaagggatgcagataaggtgcaacatcagctacttagaagaatggcttaaagataag
aatttgcagaacagcttggccagggaaaccttggaagctctctctcaggcagcctggttg
cttcaggtcaagaagaccacagacagcgatgccaaggaaatctacgaacgctgtacctcc
ctgtctgctgtgcagatcataaagatccttaactcatacacacctatagatgacttcgag
aaaagagtgactccatcctttgttcgcaaagtacaggccctcctcagtagccgagaggat
tcatcacacctgatgttggataccaagtatctctttcaagtcacatttccttttaccccc
tctccacatgctctggaaatgatccagatccccagcagtttcaaactaggctttctcaat
agattatag
DBGET
integrated database retrieval system
