Phocoena sinus (vaquita): 116748867 Help Entry 116748867         CDS       T07759                                  Symbol SPG11 Name (RefSeq) spatacsin isoform X1   KO K19026   spatacsin Organism psiu  Phocoena sinus (vaquita) Pathway psiu05014   Amyotrophic lateral sclerosis psiu05022   Pathways of neurodegeneration - multiple diseases Brite KEGG Orthology (KO) [BR:psiu00001]  09160 Human Diseases   09164 Neurodegenerative disease    05014 Amyotrophic lateral sclerosis     116748867 (SPG11)    05022 Pathways of neurodegeneration - multiple diseases     116748867 (SPG11)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03400 DNA repair and recombination proteins [BR:psiu03400]     116748867 (SPG11) DNA repair and recombination proteins [BR:psiu03400]  Eukaryotic type   DSBR (double strand breaks repair)    HR (homologous recombination)     Other HR factors      116748867 (SPG11) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Spatacsin_C Motif Other DBs NCBI-GeneID:  116748867 NCBI-ProteinID:  XP_032478282 Ensembl:  ENSPSNG00000002856 LinkDB All DBs Position 2:89916773..89993749 Genome browser AA seq 2445 aa AA seqDB search MAADKGAGSAEAVERVLPVLLVPVPAEATGRLGSRAQLHREQEVLGSLTAAGSLHVLPLA PGGRGGGGCRLEGPFRQFVWEDSHNSGTPTDKPRLLALSEDNALLICEFNLEDGRCDATI SYSYTEETLQKLIEDQIISISLLSLRILSFHSNTSLLFINEYIILHIIFPERDAEIRVLS CFTLSLPAQAVDRIIDTQLCRGILFVLSRLGWIYIFDTVDGRHVAHVDLALPQEDMYNEQ QQEPAKSSSFTSLKVSQDLDVVVIVSSSNTAIALNLNLYFRQYPGHLLCERTLEDIPIEG PKGIDEDDPVNSDYNMKLTKFSFQVDRSWKAQLSSLNETIKNSKLEGTCCAPWFQDILHL EPPESGNHSTSVPNWAFTPQDVMCSQYSFPQKGPAKTSDSGRSWKRIHISEQEEPLELTC MSVTGFTALFTWAVERTGCTIVLWDLETQSMQCVSLGKKCIPVDSGGDQQLCLVLTEDGL SLILFGLTQEEFLNRLMIHGSASTVDSLCHLNGWGRCSIPIHALEAGIENRQLDTVDFFL KSKENLLSPSSKSSVPDQFDHFPSHLYLKHVEELTPALDLLCSAIRENDSETQSKHFSEQ LLNLTLSFLNKQIKELFIHNEELDEHLQKGVNILTSYINELRTFMIKFPWKLTDAIDEYD VNENVPKVKESNIWEKLSTEEVIANAILNNKIPEAQTFFRINSHSAQRLEELIRIGLDLV FDNLKKNNIKEASELLKNMGFNVKDQLLKICFYTTDKNIRDFLVEILKEKNYFSEKEKRT IDFVHQVEKFYSGHFQENMQIQSFPRYWIKEQDFFKHKSVLDSFLKYDHKDTDKLNKQDH RIVLTWAQWWNQLTQESILLPRISPEEYKSYSPEALWRYLTARHDWFSITLWIGEFQTRN SYASLQQNKWPPLTVDVVDQNTRCNNYMRNEILDTLARNGIFLTSELEDFELFLKRLNRI GGVMQDTLPVQNYRSKDGWDFHCHFILYCLEHSLQYLLYVFLDYYKLSPPNCPFLEKKEL HEAHPWFEFLVQCRQVSSNLTDPKLIFQASLANAQILIPSNQASVSSMLLEGHTLLALAT TMYAPGGVSQVVQNEENENCVKKVDPQLLKMALTPYPKLKTALFPQYTAPSVLPPDITLY HLIQSLLPFDPSRLFGWQSANTLTIGDAASQLPHFSSPDLVNKYAIVERLNFAYYLHHGR PSFAFGTFLVQELTKSKTPKQLIQQVGNEAYVLGLSSFHIPSIGAACVCFLELLGLDSLK LRVDMKVANIILSYTCRNEDAQYNLIRESLAEKLSKLAMGEKSTIEELLVLLEEGIWDSI QQQEIKRLSSESSSQWALVVQFCRLHNLKLSTSYLRECAKANDWLQFIIHSQLHNYHPEE VKSLLQYFSPVLQDHLRLAFENLPSVSNSRMDSDQVCNKSPQELQRNKVEMTDFFEILLQ CSEVPNSWCWLLAEAVKQQAPILSVLASCVQDASAIPCLCVWIITSVEHSVAAEAMGHIQ DSMEGHTWDLEDLSVIWRTLLTRQKSKTLIRGFQLFFKESPLLFMMEMYELCMFFKNYEE AEAKLLEFQKSLETLETAATRVHAIIPAPWLKEHVYFLLKLMLQQCRTQYELGKLLQLFV GREHLFSDGKTIFTGPDVKKLCVLSQILKDTSIAINHVIITSYSLENFQHECRSILEKLE TDGYFALARRVAELAELPVDNLIIEEITQEMQTLKHIDQWSLKQARIDFWKKCHENFKKN SISSKAASSFFSAQALTACECPAEEGPSSIEERHLLLTLAGHWLAQEDLVPLEELEELEK QIWLCRITQHTLRGRQEEIAPGCSQQISTSGELSFESLASEFSFSKLAALNTSKYLEFNG LPSKDTCENKLNWKEQESLNFLIGRLLDDGCVHEASRVCRYFHFYNQDVALVLHCRALAS GEASVDDLHPDIHALLQSAELLEEEERPGVPLRKVQSTSSLDSQSFVILPPSDEVVTTLE TLTSKCLHGKNYCRQVLCLYALAKELGCSYTDVAAQDGEAILRVILASQQPDRCKRAQAF ISTQGLEPDTVAELVAEEVTRELLTPSEGTGHKQTFTPTEESQTFLQLTALCQDRTLVGM KLLDKISSVPHGDLSCTTELLILAHHCFTLTCHMEGIIRVLQAARLLTDNHLAPSEEYGL VVRLLTGIGRYNEMTYIFDLLHKKHYFEVLMRKKLDPSGTLKTALLDYIKGCRPGDSEKH NMIALCFSMCREIGENHEAAACIQLKLIESQPWEDSLKDGQQLKQLLLKALTLMLDAAES YAKDSCVRQALHCHRLTKLITLQIHFLNTGQNTMLINLGRHRLMDCIVALPRFYQASIVA EAYDFVPDWAEILYQQVILKGDFNYLEEFKQQRLLRSSIFEEISIKCKHHQPTDLVVKNL KKLLTYCEDVYLYYKLAYEHKFYDVVNVLLKDPQTGCCLKDMLAG NT seq 7338 nt NT seq  +upstreamnt  +downstreamnt atggctgcagacaagggggctggaagcgctgaagccgtggagcgggttctacccgtgttg ttggtgccggtccccgccgaggcaacagggcgtctgggatcccgggcgcagttgcacagg gagcaggaggttctggggagcctgacggctgcgggcagccttcacgtgcttcccttggcg cccggcggccggggcgggggcggctgccgcctggaaggcccttttcggcagtttgtatgg gaggactctcataacagtgggacaccaacagacaagcccagactgcttgctcttagtgaa gataatgcactgctcatctgtgaatttaatttggaagatggaagatgtgatgcaaccatt tcatatagctatactgaggagacattgcaaaagctcattgaagatcaaattatcagtatt tccttattatctttgagaattctgtcatttcacagtaacacatcattattgttcatcaat gaatatatcatcctgcacattatatttcctgaaagagatgctgagattagggtactcagc tgtttcacattatccttgcctgcacaggcagtggacaggattattgacacacagctctgc agaggaattctttttgttttgagtcgtttaggctggatctacatttttgacactgtggat ggtagacatgtagctcatgtggatttggcacttcctcaagaagatatgtataatgagcag caacaagagccagccaagagttcttcctttacttcattgaaagtgtctcaagacctagat gttgtagtgattgtcagctcctccaacactgcaattgctcttaacttaaatttgtatttc aggcaatacccaggacacctactatgtgaaagaacactagaagacattcctattgaaggc cctaaggggatagatgaagatgatcctgttaattctgactacaacatgaaactgaccaag ttttccttccaagttgatcggtcttggaaagcccagctgtcatcactgaatgaaacaata aagaactccaagctggaaggtacctgttgtgctccgtggttccaggatattttgcatttg gagccccctgaatctggtaaccacagtaccagtgtgccaaactgggccttcactccacag gatgtaatgtgcagccagtatagttttccacagaaaggtcctgccaagaccagtgattca ggaagatcatggaaaagaatacacatcagtgaacaggaggaaccccttgagcttacatgt atgtctgtgacaggcttcactgcgctgtttacttgggcagttgaaaggacgggctgtacc attgtcctgtgggatttggagacccagagcatgcagtgtgtttcgctgggcaagaagtgt attcctgtagacagtggtggagaccagcaactgtgccttgttttgacagaagatggactg tctctgattttgtttggtttgactcaagaggaatttttaaataggctaatgatccatgga agtgccagcactgtggactctctttgccatctcaatggttgggggaggtgctccatcccc atacatgcgctagaggcaggaatagaaaatcgtcagctggacacagtagatttctttttg aagagcaaggaaaatcttttgagtccatcctcaaaatcttctgtacctgatcagtttgat cactttccatcccatttatatttaaaacatgtggaagagctgacaccagcattggattta ctttgctcagcaattagagaaaatgattctgaaacccagagcaaacacttttcggaacag ttgcttaatcttacactgtctttccttaacaaacaaataaaggagctttttattcacaat gaagagctagatgaacatctacagaaaggagtgaacattttgaccagctacattaatgaa cttcgaaccttcatgataaagtttccttggaagctaacagatgctatagatgaatatgat gtaaatgaaaatgtccccaaagtaaaggagagcaatatatgggagaagctcagcactgag gaagttattgccaatgccattttaaacaacaaaataccagaggcacaaactttcttcagg attaatagtcattctgctcaaagactcgaggagttgattagaataggcctagatttggtc tttgacaatttgaaaaagaataatataaaggaagcctctgagcttttgaagaatatgggc tttaatgtaaaagaccagttgctcaagatatgcttctatacaactgataaaaacatacgg gactttttggttgaaattttaaaagaaaaaaattatttttctgaaaaagaaaaaagaact atagacttcgtgcatcaagttgagaagttttattcaggacatttccaagaaaatatgcag atccagtcttttcccaggtattggataaaggaacaagattttttcaagcacaagtctgtt ttggattcattcctgaaatatgatcataaagatacagataaacttaacaagcaagatcac agaattgtgttaacttgggctcagtggtggaatcaactaacacaagaatccatccttctc cccaggataagtccagaagaatacaaatcatattctcccgaagccctctggagatacctc acagctcgccatgattggttcagcattaccttgtggattggagaatttcagacccggaat agttatgcctcacttcagcagaacaaatggccccctctgaccgttgacgttgttgatcag aatactcgctgcaacaactacatgaggaatgaaattttagatacactggccaggaatgga atttttcttacatctgaactagaagactttgaactctttctcaaaagactgaatcgtatt gggggtgtgatgcaagataccctccctgttcaaaactataggtccaaagatggttgggat ttccattgtcacttcattctctattgtttggaacacagtctgcagtatcttctttatgtc tttcttgactattacaaacttagtcctccaaattgtccctttttggaaaaaaaagaatta catgaagctcacccttggtttgaatttttagttcagtgtcgacaagtttccagtaattta acagatcccaaactgatcttccaggctagccttgcaaatgctcagatactgattcccagc aaccaggccagtgtaagcagtatgctattggaaggacataccctcctggcccttgctacc acaatgtatgcccctgggggcgtcagccaggttgttcagaatgaagaaaatgagaactgt gtgaagaaagtagatccccagctactgaagatggcattaactccttaccccaagcttaaa actgctctcttcccacagtacactgcccctagtgtcctgccaccagatattacactctac cacctgattcagtcattattgccctttgatcctagcagattgtttggctggcagtctgcc aacacactgactataggagatgcagcgagtcagctcccacatttctctagccctgacctg gttaataaatatgctatagtagaacgtctgaattttgcttattatttacatcatggacga ccatcgtttgcgtttggtacttttctggttcaggaattaaccaagagcaagacccccaag cagctaatccagcaagtaggcaatgaagcctatgttttagggctctcctccttccacata ccttcaataggagctgcctgtgtttgtttcttagaactgcttggcctcgacagcctcaag ctcagagttgatatgaaagtggccaatataattttgagctacacgtgtagaaatgaagat gctcagtacaaccttatcagagagtctctagctgaaaaactatctaaactggctatgggt gaaaagtcaaccatagaagaattgcttgttctcttagaggaaggtatatgggacagcatt cagcagcaggaaataaaaaggttatccagtgaatccagcagccagtgggcattagtggta caattctgcaggctccacaatctgaaactgagcacatcttaccttagagagtgtgccaaa gcaaatgattggttacagtttattattcacagccaactccataattaccacccagaggag gtgaaatctcttctccagtatttcagccctgttcttcaagaccacttaagactggctttt gagaacttgccctcagtgtccaactctagaatggacagtgatcaagtctgcaacaagtcc ccgcaggaactgcaaagaaacaaagtagagatgactgatttctttgaaattctgcttcag tgctcagaggtgccaaactcctggtgctggctcctggcagaagcagtgaaacaacaggcc ccaatccttagtgtcctggcctcatgtgtccaggacgccagtgctattccttgcctctgt gtttggatcatcacttccgtggagcacagtgttgcagctgaagcaatgggacacattcag gactcaatggagggccatacctgggaccttgaggacctctcagtcatctggaggacatta ttaacacggcagaagagcaaaactctcatcagaggtttccagcttttctttaaggagtcc ccattactattcatgatggagatgtatgaactgtgtatgttcttcaagaattacgaggaa gccgaagctaaacttctggagttccagaagagccttgaaactcttgaaacggctgccaca agggtccacgctatcattcctgccccatggctgaaggagcatgtgtattttcttttgaag cttatgctgcagcagtgtaggacccagtatgagctggggaagcttttacagctgtttgtt ggaagagagcatctcttctctgatggtaagacaatatttacaggtccagatgtgaagaag ctgtgtgtccttagccaaattttgaaggatacatccatagccattaatcatgtaattatt accagctacagccttgagaattttcagcatgaatgtagatcaattttagaaaaactggag acagatggatactttgctttggccagaagggtagcagaactagctgagctacctgtggac aacctgattattgaagagataacacaggaaatgcagaccttaaaacacattgaccagtgg tccctgaaacaagcaagaattgacttctggaaaaaatgtcatgagaattttaagaaaaat tccatttcaagcaaagcagcttcttcctttttctcagcccaggctcttacggcatgtgag tgcccagctgaagagggaccaagcagcattgaggagcgccatctgctcctcactctggca ggacactggcttgcccaggaggacctggtgcctttggaggagctggaggagctagagaag cagatctggctctgccgcatcacccagcacaccctcaggggaaggcaggaggaaatagcc cccggatgttctcaacagatttcaactagtggtgaactttcctttgaaagcttagccagt gagttttcattctctaagttggctgctctgaacacatcaaaatacttagaatttaatggc cttccatccaaagacacttgtgagaacaaactgaattggaaggagcaggagtccctaaac tttttgattgggcgcctattggatgatggctgtgtgcatgaagcaagtagagtgtgccga tattttcatttctataaccaagatgttgccttggtgttgcattgcagagcactggcttca ggggaagctagtgtggatgacctgcacccggacatccatgctctcttacagagtgctgag ctgcttgaggaagaagaacgacctggcgttcctctaaggaaagtccaaagcacttcaagt ttggacagtcagtcatttgtgatactgccccccagtgatgaagtggtgactactctggaa actctgacaagcaaatgcctccatgggaagaattattgccggcaggtcctctgtctctat gcacttgccaaggagttgggctgttcctacacagatgtcgctgcccaggatggtgaggcc attctccgggtaatcttggcctctcagcagcctgaccgatgcaagcgagctcaagccttc atcagcacccagggcctcgagccagacacagtggctgaacttgtggctgaagaggtgacc cgggagctgctgaccccatcagagggaacaggacataagcagacgttcaccccaacagag gaaagccagacgtttcttcagctgactgctctgtgtcaagaccgcaccttggtaggcatg aagttgttggataagatttcctccgttccccatggggacttgtcttgcaccacagagctg ctgatcctggctcatcactgcttcacactgacgtgccacatggagggcatcatccgagtc ctgcaggccgcccggctgctcacagacaaccacttggcccccagtgaagagtatggactg gtggtgcgtctcctcactggcattggaaggtacaatgagatgacatacatatttgatttg ctgcataaaaaacactactttgaagtgctgatgaggaagaaattggacccgagtggtacc ctgaagacggccctactggactacatcaaaggctgccgccctggggacagtgagaagcac aacatgattgccctgtgtttcagcatgtgtcgggagattggggagaaccatgaggcagct gcctgcatccaactgaaattgattgagtctcagccctgggaggacagcctcaaggacggg cagcaactgaagcagctgctgctgaaggccctgactctgatgctggatgcagcagagagt tatgccaaggactcctgcgtgcgacaagccctgcactgtcaccggctcaccaagttgata acactgcagattcactttctgaacaccggccagaacacaatgctcatcaacctggggcgc cacaggctgatggactgtatcgtggccctacctcggttctaccaggcttctattgtggct gaggcctatgactttgttcctgattgggctgaaattctataccaacaagtgattcttaaa ggagactttaattacctggaagaatttaagcagcaaaggttattaagatccagtatattt gaagaaatttcaataaaatgtaaacatcatcagcctactgacttagttgtgaaaaatctg aagaagttactcacatattgtgaagacgtctacttgtattacaagctggcatacgaacac aaattttatgacgttgtaaatgtgcttctgaaggaccctcagacaggttgctgtctaaag gacatgctagcaggttag

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