Phocoena sinus (vaquita): 116748921
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Entry
116748921 CDS
T07759
Symbol
CSPG4
Name
(RefSeq) chondroitin sulfate proteoglycan 4 isoform X1
KO
K08115
chondroitin sulfate proteoglycan 4
Organism
psiu
Phocoena sinus (vaquita)
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
psiu00535
]
116748921 (CSPG4)
04091 Lectins [BR:
psiu04091
]
116748921 (CSPG4)
Proteoglycans [BR:
psiu00535
]
Cell surface proteoglycans
Others
116748921 (CSPG4)
Lectins [BR:
psiu04091
]
C-Type lectins
Others
116748921 (CSPG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin_3
Laminin_G_2
Laminin_G_1
Cadherin_4
Motif
Other DBs
NCBI-GeneID:
116748921
NCBI-ProteinID:
XP_032478471
Ensembl:
ENSPSNG00000001563
UniProt:
A0A8C9AWM7
LinkDB
All DBs
Position
2:60755646..60791249
Genome browser
AA seq
2315 aa
AA seq
DB search
MRSGPRLLLSAPALTLALTFATLVGPASTASFFGENHLEVPVAMSLTDIDLQLEFSTSQP
EALLLLAAGPADYLLLQLHSGRLQVRFILGQEEVRMQTLAETLLSDSIPHTVGLTVSDSW
ALLSVDGLLNASAQVQQAPLEVPYGLFLGGTGSLGLPYLSRASRPLRGCLHTATLNGRSL
LRPLTPDVPEGCAEEFSAGDDVAMGFSGPHSLAAFPAWGTRDEGTLEFTLTTRSRQAPLA
FQAGDRHGDFIYVDIFEGHLRAVVEKGQGTVLLHNSVPVADGQPHEVSVHMDAHRLEISV
DQYPTRTSNRGVLSYLEPRGSLLLGGLDAEGSRHLQEHRLGLAVNVSLRGCLEDLSINGQ
RWGLREALLTRGMEAGCRLEEEEEDAYGPYEAFSTLAPEAWPAMELPEPCTPEPGLPPIF
ANFTQLLTVRPLVVAEGGTAWLEWRHVQPTLDLSEAELRKSQVLFSVSRGAQHGELELDI
PGAQARKMFTLLDVVNRKARFVHDGSEDTSDQLVLEVSVTARGPVPSCLRRGQTYILPIQ
INPVNDPPRVIFPHGRHMVILEHTQKLLGPEVFQADDPDSACEGLTFQLLGVPAGLPVER
QDQPGEPATEFSCRELDAGSLVYVHRGGPAPDLTFRVSDGLQASPPVTLQVVAVRPAIQV
RHNTGLRLAQGSTAPVLPSNLSVETNAVGQDVSVLFRLTGALQFGELQKQGAGGAEGTEW
RATRAFHQRDVEQGRVRYLSTDPQHRAEDTVEHVALEVQVGQETLSNLSFPVTVQRATVW
LLRLEPLHPQNAQQEAITTAHLEATLEEAGPNPTAFHYEVVQAPRKGNLQLQGMRLSDGQ
SFTQDDLQAGRLTYGATARASEAVEDSFRFRVTAPPHFSPLYTFPIHIGGDPDAPVLTNV
LLSVPEGGEGVLSADHLFVKSLNSASYLYEVMERPRHGRLVWQGAQDGVTMVTSFTNEDL
LHGRLVYQHDDSETTEDDIPFVATRQGEGSGDVAWEEVRGVFRVAIQPVNDHAPVQTISR
VFHVARGGQRLLTTDDMAFSDADSGFADAQLVLTRKDLLFGSIVAVDEPTRPIYRFTQED
LRKRRVLFVHSGADRGWIQLQVSDGQHQATALLEVQASEPYLRVANGSSLVVPQGGQGTI
DTAVLHLDTNLDIRGGDEVHYHVTAGPRWGLLLRAGQPVTTFSQQDLLDGAILYSHNGSL
SPRDTLGFSVEAGPVHTDAALQVTIALEGPLAPLHLVQNKKIYVFQGEAAEIRRDQLEAA
QEAVPPADIVFSVKTPPSSGHLVMLSHRATAAELPSLDPVHSFSQAAVDAGRVLYLHSRP
EAWSDVFSLDVSSGLGAPLEGIHVELEVLPTAIPLEALNFSVPEGGTRTLAPPLLRITGP
YFPTLPGLDLQVLEPPQHGVLKREEGPQDRTLSTFSWREAEQQLILYVHDGSETLADSFV
LVANASEMDRQSRPVTFTITILPVNDQPPILTTNTGLQMWEGATVPIPPEALRGTDSDSG
PEDLVYTLEEPSNGQVVLRTAPGAKVHSFTQAQLDGGLVLFSHRGAPDGGFRFILSDGEH
TSTGHFFRVTAQKQLLLSLEGSRTLTICPGSIQPLSSQSLRASSSTGTDPHHLFYRVVRG
PRLGRLFHTQQGSTGEALENFTQAEVYAGNVLYEHEMPPEPFWEAHDALELQLSSPPAPD
MAATLAVTVSFEATCPQRPSRLWKNKGLWVSEGQRAKITTATLDASNFLASVPAPRRSEH
DVLFQVTQFPQRGQLLVSEEPLHIGRPHFLQSELAAGQLVYTHGGGGTQQDGFHFRAHLQ
GPAGASVAGPQTSEAFAITVRDVNERPPQPQTSIPLRLTRGSRSPVSRAQLSVVDPDSAP
GEIEYKVQRAPHNGFLSLAGASPGPVTCFTQADVDAGRLAFVANGSSVVGIFQLSVSDGA
SPPLPMSLAVDVLPSAIEVQLRAPLEVPQALGRASLSRQQLWVVSDREEADAAYRLTQGP
RHGHLLVRGQPATAFSQFQVDQGEVVFAFTSFSSSHDQFSILALARGANASATVNVTVRA
LLHVWTGGPWPQGATLRLDPTVLDAGELANRTGSVPRFRLLAGPRHGRLVRVPRTRTEPR
GGQLVEQFTQQDLEDGRLGLEVGRPEGSSPGPAGDSLTLELWARGVPPAVASLGFATEPY
NAARPYRVALLSLPARTEAGEPGNSTPTGEPGLAASSPTPTVARGHFLGFLEANMFSIIV
PVCLVLLLLALIVPLLFYLRKRNKMGKHNVQVLTAKPRNGLAGDTETFRKVEPGQAIPLT
AVPGQGAPPGGQPDPELLQFCRTSNPALKNGQYWV
NT seq
6948 nt
NT seq
+upstream
nt +downstream
nt
atgcgctccggcccgcggctcctgctctcagcccccgccctgaccctggctctgaccttc
gctacgttggtgggaccagcatccacagcctccttcttcggagagaaccacctggaggtt
cctgtggccatgtctctgactgacatagacctacagctggagttttctacgtcccagccc
gaagccctgcttctcctggcggcaggcccggctgactacctcctcctgcagctccactct
ggacgcctgcaggtcagatttatcctgggccaggaggaggtgaggatgcagaccctggca
gagacactgctgagcgactccattccccacactgtggggctgaccgtgtcagacagctgg
gccttgttgtcagtcgatgggctcctgaatgcctccgcccaagtccagcaggcccccctg
gaggtcccctatgggctcttcctggggggcaccgggagccttggcctgccctacctgagc
agagccagccgacccctgcggggttgcctccacacagccaccctcaatggccgcagcctc
cttcggccactgaccccagacgtgcctgagggctgtgctgaggagttctctgccggtgat
gacgtggccatgggcttctctgggccccactcactggctgccttccctgcctggggcact
cgggatgaaggcaccctggagtttacactcaccacacggagccggcaggcgcccctggcc
ttccaggcaggggaccggcacggggacttcatctacgtggacatatttgagggccacctg
cgggctgtggtggagaagggccagggcactgtattgctccacaacagcgtgcctgtggcc
gatgggcagccccacgaggtcagtgtccacatggatgctcacaggctggaaatctccgtg
gaccagtaccccacacgtacttccaaccgtggggtccttagctacctagagccacgaggc
agtctcctccttggagggctggatgcagagggctctcgtcatctccaggaacaccgcctg
ggcctggctgtcaacgtctccctgaggggctgcctggaggatctcagcatcaacggtcag
agatgggggctccgggaagccttgctgactcgcggcatggaggctggctgcaggctggag
gaggaggaggaggatgcctacggcccatacgaagctttctccaccctggcacccgaggct
tggccggccatggagctgcctgagccctgcacccctgaaccggggctgcctccgatcttt
gccaatttcacccagctgctgaccgtccgccccctggtggtggccgagggcggcacagcc
tggctggagtggcggcacgtgcagcccacgctggatctgagcgaggccgagctgcgcaaa
tcccaggtgctgttcagcgtgagccgtggggcccaacacggcgagctggagctggacatc
ccgggtgcccaggcacggaaaatgttcaccctcctggacgtggtgaaccgcaaggcccgc
ttcgtccacgatggctccgaggacacctccgaccagctcgtgcttgaggtgtcggtgacg
gctcgggggcccgtgccctcctgccttcggaggggccaaacgtacatcctgcccattcag
ataaaccccgtcaacgacccgccccgcgtcatcttcccgcacggcaggcacatggtgatc
ctggaacacactcagaagctgctggggccggaggtcttccaggccgatgacccagactcc
gcctgcgagggcctcaccttccagctcctcggtgtccccgccggcctccccgtggagcgc
caagaccagcctggggagccagcgaccgagttctcctgccgggagctggatgcgggcagc
ctggtgtacgtccaccgcggcgggcctgccccggacctgacgttccgggtcagcgacggg
ctgcaagccagccccccggtcacgctgcaggtggtggccgtccggccggccattcaggtc
cgccacaacacggggctgcgcctggcccagggctccactgcacctgtcttgccctccaac
ctgtcggttgagacaaatgctgtggggcaggatgtgagcgtgctcttccgactcaccggg
gccctgcagtttggggagctgcagaagcagggggcgggcggggcggagggcaccgagtgg
cgggccacacgggccttccaccagcgggacgtggagcagggccgcgtgaggtacctgagc
accgacccgcagcaccgggctgaggacaccgtggagcacgtggccctggaggtgcaggtg
ggccaggagaccctgagcaatctgtccttcccagtgacggtccagagagccacggtgtgg
ctgctgcggctggagcctctgcacccccagaacgcccagcaggaggccatcaccacggcc
cacctggaagccaccctggaggaggcaggcccgaaccccaccgccttccactatgaggtg
gttcaggcccccaggaagggtaatcttcagctacagggcatgcggctgtcggacggtcag
agcttcacccaggatgacctgcaggctggccggttgacttatggggccacagcacgtgcc
tcagaggcagtcgaggactccttccgtttccgggtcacagccccgccacacttctcccca
ctctacaccttccccatccacatcggtggtgatccagacgcccctgtcctcaccaacgtc
ctcctctcggtgcctgagggtggcgagggcgtcctctctgctgatcacctctttgtcaag
agtctcaacagtgccagctacctctatgaggtcatggagcggccccgccacggcaggttg
gtgtggcagggggcacaggacggtgtcaccatggtgacatccttcaccaatgaggacctg
ctgcacggccggctggtctaccagcatgacgactctgagaccacggaagatgacatcccc
tttgtggctacccgccagggcgagggcagtggtgacgtggcctgggaggaggtacggggt
gtcttccgggtggccatccagcccgtgaatgaccacgcccctgtgcagaccatcagccgc
gtcttccacgtggcccgcggtgggcagcggctgctgaccaccgatgacatggccttcagt
gatgctgactccggctttgccgatgctcagctggtgctgacccgcaaggacctcctcttc
ggcagcatcgtggctgtagatgagcccactcggcccatctaccgcttcacccaggaggac
ctcaggaagaggcgggtcctgttcgtgcactcgggagccgaccgcggctggatccagctg
caggtgtccgatgggcagcaccaggccacagcgctgctcgaagttcaggcctcagagccc
tacctccgtgtggccaacggctccagcctcgtggtccctcaaggaggccagggcaccatc
gacacagctgtgctccacctggacaccaacctagatatccgtggtggggatgaggtccac
taccatgtcacagctggcccacgctgggggctgctgctccgggctggccagccagtcaca
accttctcccagcaggacctgctggatggggccattctctacagccacaacggcagcctc
agcccccgtgataccctgggcttctctgtggaggcagggcctgtgcacacagatgccgcc
ctacaagtgaccattgccctagaggggccactggccccattgcacctggtccagaacaag
aagatctatgtcttccagggggaggcggctgagatcagaagagaccagctggaggcagcc
caggaggcagtgccaccggcagacattgtgttctcagtgaagaccccaccgagctctggc
cacctggtgatgttgtcccaccgcgccacggcagccgagctgcccagcctggaccctgtg
cacagcttctctcaggcggcggtggacgcgggcagggtcctgtacctgcactcccgccct
gaggcctggagtgatgtcttctccctggatgtgtcctcaggcctgggtgcgcccctcgag
ggcatccacgtggagctggaggtgctgcccactgccatcccactggaggcgctgaacttc
agtgtccccgagggcggcacccgcacgctggcccctccactgctccgcatcactgggccc
tacttccccacgctgccgggccttgacctgcaggtgctggagccaccccagcatggggtc
ctgaagagagaggaaggacctcaagacaggaccctcagcaccttctcctggagagaggcg
gaacagcagctgattctctatgtgcatgacgggagcgagacgctggcagacagtttcgtc
ctagtggctaatgcctcagagatggaccgccagagccgtcccgtgaccttcactatcacc
atcctgcctgtcaacgaccaaccccccatcctcaccacaaacacaggcctgcagatgtgg
gagggggccactgtgcccatccctccggaggcccttaggggcacagacagcgactcaggc
cccgaggacctggtctacacccttgaggagcccagcaacggacaggtggtgctgcggaca
gcgccgggcgccaaggtccacagcttcacccaggcccagctcgacggcgggctcgtgctg
ttctcacacagaggagccccggacggaggcttccgcttcatcctatctgatggcgagcat
acttccactggacacttcttccgggtgacggcccagaagcagctgctcctctcactggag
ggcagccggacgctgaccatctgcccagggtccatccagccactcagcagccagagcttg
agagccagttccagcacaggcaccgacccccaccacctgttctaccgtgtggtacggggg
ccccggcttggccggctattccacacccagcagggcagcaccggggaggccctggagaat
ttcactcaggcagaggtatatgctgggaatgttctgtatgagcacgagatgccccccgag
cccttctgggaggcccatgacgccctggagctccagctgtcctcaccacctgcccctgac
atggccgccacccttgctgtgactgtgtcttttgaagctacctgtccccagcgccccagc
cgcctctggaagaacaaaggtctctgggtctcggaaggccagcgggccaaaatcaccaca
gccaccctcgatgcctccaacttcctggccagcgttccggccccccggcgctcggagcac
gatgtgctcttccaggtcacacagttcccccagcggggccagctgttggtgtccgaggag
cccctccacatcgggcggccccacttcctgcagtctgagctggccgcaggacagcttgta
tacacccacggcggcgggggcacccagcaggatggcttccacttccgtgcccacctccag
gggcccgcgggggcctccgtggcgggaccccaaacctcagaggctttcgccatcacagtg
cgggatgtgaatgagcggccgcctcagccgcagacctccatcccgctccggctcacccgg
ggctcccgcagccccgtctcccgggcccagctgagcgtggtggacccagactcggctccg
ggggagatcgagtacaaggtgcagcgggcccctcacaatggcttcctgagcctggcaggg
gccagcccggggcctgtgacctgcttcactcaggccgacgtggatgcagggcggctggcc
tttgtggccaatgggagcagcgtggtgggcatcttccagctgagtgtgtctgacggggcc
agcccgcccctgcccatgtccctggccgtggacgtcttgccctcggccattgaggtgcag
ctgcgggcacccctagaggtgccccaagctttagggcgcgcctccctgagccggcagcag
ctctgggtggtttccgatcgggaggaggcagacgcagcctaccgcctcacccaggggccc
cggcatgggcatctcctggtgcgcgggcagcctgccacagccttcagccagttccaggta
gaccagggcgaagtggtctttgctttcaccagcttctcctcctctcacgaccaattcagc
atcctggcactggccaggggtgccaacgcatccgccacggtgaatgtcacggtgagggct
ctgctgcatgtgtggacaggtgggccgtggccccagggtgccaccctacgcctggacccc
actgtcttagatgcgggcgagctggccaaccgcacaggcagtgtgccgcgtttccggctc
ctggcgggaccccggcacggccgcctggtccgtgtgccccggaccaggacagagcccagg
ggcggccagcttgtggagcagttcacccagcaggaccttgaggacgggaggctggggctg
gaggtgggcaggccggagggtagctctcctggacctgcaggcgacagtctcactctggag
ctgtgggccaggggtgtccctcctgccgtggcctcactgggctttgccacggagccttac
aacgcagcccggccctacagagtggccctgctcagtctgcctgctcggacagaagcaggg
gagccagggaacagcacccccactggcgagccaggcctggcggcctccagccccacgccc
accgtggccagggggcacttcctgggctttctcgaggccaacatgttcagcatcatcgtc
cccgtgtgcctggtcctcctgcttctggcactcatcgtgcctctgctcttctacctccgc
aaacgcaacaagatgggcaagcacaacgtccaggtgctgactgccaagccccgaaacggc
ctggctggcgatacggagaccttccgaaaggtggagccgggccaggccatccccctcaca
gcggtgcctggccagggggccccgccgggggggcagcctgacccagagctgctgcagttc
tgccggacatccaaccctgccctcaagaacggccagtactgggtgtga
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integrated database retrieval system
