Phocoena sinus (vaquita): 116748923
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Entry
116748923 CDS
T07759
Symbol
UPF2
Name
(RefSeq) LOW QUALITY PROTEIN: regulator of nonsense transcripts 2
KO
K14327
regulator of nonsense transcripts 2
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu03013
Nucleocytoplasmic transport
psiu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
116748923 (UPF2)
03015 mRNA surveillance pathway
116748923 (UPF2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psiu03019
]
116748923 (UPF2)
Messenger RNA biogenesis [BR:
psiu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
116748923 (UPF2)
mRNA cycle factors
P-body specific factors
116748923 (UPF2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
116748923
NCBI-ProteinID:
XP_032478483
Ensembl:
ENSPSNG00000018347
LinkDB
All DBs
Position
2:20142248..20233668
Genome browser
AA seq
1268 aa
AA seq
DB search
MPAERKKPASMEEKESLLNSKEKDCSERRPVSSREKPKEEIKLTAKKEVIKVPEDKKKKL
EEDKRKKEDKERKKKEEEKVKAEEELKKKEEEEKKKHEEERKKQEEQAKRQQEEEAAQLK
EKEESLQLHQEAWERHQLRKELRSRNQNAPDNRPEENFFSRLDSSLKKNTAFVKKLKTIT
EQQRDSLSHDFNGLNLSKYIAEAVASIVEAKLKISDVNCAVHLCSLFHQRYADFAPSLLQ
VWKKHFEARKEEKTPNITKLRTDLRFIAELTIVGIFTDKEGLSVIYEQLKNIINADRESH
THVSVVISFCRHCGDDIAGLVPRKVKSAAEKFNLSFPPSEIISPEKQQPFQNLLKEYFTS
LTKHLKRDHRELQNTERQNRRILHSKGELSEDRHKQYEEFAMSYQKLLANSQSLADLLDE
NMPDLPQDKPTPEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYENLIDLKAFVPAIL
FKDNEKSCQSKESNKDDYKEAKEPKDNKEVSSPDDLELELENLEINDDTLELEGGDEAED
LTKKLLDEQEQEDEEASTGSHLKLIVDAFLQQLPNCVNRDLIDKAAMDFCMNMNTKANRK
KLVRALFIVPRQRLDLLPFYARLVATLHPCMSDVAEDLCSMLRGDFRFHVRKKDQINIET
KNKTVRFIGELTKFKMFTKNDTLHCLKMLLSDFSHHHIEMACTLLETCGRFLFRSPESHL
RTSVLLEQMMRKKQAMHLDARYVTMVENAYYYCNPPPAEKTVKKKRPPLQEYVRKLLYKD
LSKVTTEKVLRQMRKLPWQDQEVKDYVICCMINIWNVKYNSIHCVANLLAGLVLYQEDVG
IHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLYSFTSFGVN
PDGSPSSLDPPEHSFQDXTSVHYLDTCGQYFDRGSSKRKLDCFLVYFQRYVWWKKSLEVW
TKDHPFPIDIDYMISDTLELLRPKIKLCNSLEESIRQVHDLEQEFLIKLGLVNDKDSKDS
MTEGENLEEDEEEEEGGAETEEQSGNESEVNEPEEEEGSDNDDDEGEEEEEENTDYLTDS
NKENETDEENTEVMIKGGGLKHVPCVEDEDFIQALDKMMLENLQQRSGESVKVHQLDVAI
PLHLKSQLRKGPPLGGGEGETESADTMPFVMLTRKGNKQQFKILNVPMSSQLAANHWNQQ
QAEQEERMRMKKLTLDINERQEQEDYQEMLQSLAQRPAPANTNRERRPRYQHPKGAPNAD
LIFKTGGR
NT seq
3807 nt
NT seq
+upstream
nt +downstream
nt
atgccagctgagcgtaaaaagccagcaagtatggaagaaaaagaatctttactaaacagc
aaggaaaaagactgcagtgaaaggcggccagtgagcagcagggagaaaccaaaagaggag
atcaagcttaccgccaagaaggaggttattaaggtccctgaagataagaagaagaaactg
gaagaagataagagaaaaaaagaagacaaggaacgcaagaaaaaagaagaagaaaaggtg
aaggcagaggaagaattaaagaaaaaagaggaagaagaaaaaaagaagcatgaagaagag
agaaagaagcaagaagagcaggcaaaacgtcagcaggaagaagaggctgcccagttgaaa
gagaaagaggaatcccttcagcttcatcaggaggcttgggaacgacatcagttaaggaag
gaacttcgcagcagaaaccaaaatgctccagacaaccgaccagaggaaaatttctttagc
cgactagattcaagtttgaagaaaaataccgcttttgtcaagaaactaaaaactattacg
gaacaacagagagactccttgtcccatgattttaatggcctaaatttaagcaagtacatt
gcagaggctgtagcttctattgtggaagcaaagctaaaaatatctgacgtgaattgtgct
gtgcacttatgctctctctttcaccagcgttacgccgactttgccccgtcacttcttcag
gtttggaaaaaacattttgaagcaaggaaagaagagaaaacacctaacattaccaagtta
agaactgatttgcgtttcattgcagaattgacaatagttgggattttcactgacaaggaa
ggtctttccgtaatctatgaacagctaaaaaatattattaatgctgatcgggaatcccat
acccatgtttctgtggtgattagtttttgtcgacattgtggagatgatattgctggactt
gtaccaaggaaagtaaagagtgctgcagagaagtttaatttgagttttcctcctagtgag
ataattagtccagagaaacagcaacctttccagaatcttttaaaagaatactttacgtct
ttgaccaaacacctgaaaagggaccacagggagctacagaatactgagagacaaaacagg
cgtattctacattctaaaggagagctgagcgaagatagacataaacagtatgaggaattt
gctatgtcttatcagaagctgctggcaaattctcaatccttagcagaccttttggatgaa
aatatgccagatcttcctcaagacaaaccaacaccagaagagcatgggcctggaattgat
atatttacacctggtaaacctggagaatatgacttggaaggtggtatatgggaggatgaa
gatgctcggaatttttatgagaacctcattgatttgaaagcttttgttccagccatcttg
tttaaagataatgaaaaaagttgtcagagtaaagagtccaacaaggatgattacaaagag
gcaaaggaacctaaggataataaagaggtatcaagtcctgacgatttggagcttgagttg
gagaacctagagattaatgatgacactttggagctagagggtggagatgaagctgaagat
cttacaaagaaacttcttgatgagcaagaacaagaggatgaagaagccagcactggatct
catctcaagctcatagtagatgcttttctccagcaattgcccaactgtgtcaaccgtgat
ctgatagacaaggcagcaatggatttttgcatgaacatgaacacaaaagcaaataggaag
aagctggtccgggcgctctttatagttcccagacaaaggttggatttgctaccattttat
gcaagattggttgctacattgcatccctgcatgtctgatgtagcagaggatctttgttcc
atgctgaggggggatttcagatttcatgtacgaaaaaaggaccagatcaatattgaaaca
aagaacaaaactgttcgttttattggagaactcactaagtttaagatgttcacaaaaaat
gatacactgcattgtttgaagatgcttctatcagacttttcccatcaccatattgaaatg
gcatgtaccctactagaaacatgtggaagatttcttttcagatctccagaatctcacctg
aggaccagtgtgcttttggaacaaatgatgagaaagaaacaagcgatgcatctcgatgca
agatatgtcacaatggtggagaatgcatattactactgcaacccacctccagctgaaaaa
acagtgaaaaagaaacgtcctcctctccaggaatatgtccggaaacttttgtacaaggat
ctctccaaggttaccactgagaaggttttgagacagatgcgaaagttgccttggcaggac
caagaagtgaaagactatgtgatttgttgtatgataaacatctggaatgtgaaatataac
agcattcattgtgtagccaacctcttagcaggactagtgctctaccaggaggatgttgga
atccatgttgtggatggagttttagaagatattcgattaggaatggaggttaatcaacct
aaatttaatcagagacgtatcagcagtgccaagttcttaggggaactttataattaccga
atggtggaatccgctgttatttttagaactctttattcttttacttcatttggtgttaac
cctgatggctctccaagttcactggaccctcccgagcactcttttcaggattagactagt
gtgcactatttggatacctgtggccagtactttgacagaggttctagtaaacgaaaactc
gattgcttccttgtgtattttcagcgttatgtttggtggaagaaaagtttggaggtttgg
acaaaagaccatccatttcctattgacatagattacatgatcagtgacacactagaactg
ctaagaccaaagatcaaactctgtaattctctggaagaatccatcaggcaggtacacgac
ttggaacaagaattcttaataaaactaggcctagtaaatgacaaagactcaaaagattct
atgacagaaggagaaaatcttgaagaggatgaagaagaagaagaaggaggagctgaaaca
gaggaacaatctggaaatgaaagtgaagtgaatgagccagaggaagaggagggttctgat
aatgatgacgatgaaggggaggaagaagaggaagagaatacagattacctcacggattca
aataaggagaatgaaactgatgaagaaaatactgaggtaatgattaaaggaggtggactc
aaacatgtaccttgtgtagaagatgaggacttcattcaagctctggataaaatgatgcta
gaaaatcttcagcaacgaagtggcgaatctgttaaagtgcaccaacttgatgttgccatt
cccttgcatctcaaaagccagctgaggaaagggcccccactcggtggtggggagggagag
acagagtctgcagatacgatgccatttgtcatgttaaccagaaaaggcaataaacagcag
tttaagatccttaatgtacccatgtcttcccaacttgctgcaaatcattggaaccagcaa
caggcagaacaggaagagaggatgagaatgaaaaagctcacactagatatcaatgaacgg
caagaacaagaagattatcaagaaatgctgcagtctcttgcccagcgcccggctccagca
aacaccaatcgggagcggcggcctcgttaccaacatccaaagggagcgcctaatgcagat
ctaatctttaagactggtgggaggtag
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