Phocoena sinus (vaquita): 116749059
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Entry
116749059 CDS
T07759
Symbol
VPS39
Name
(RefSeq) vam6/Vps39-like protein isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu04140
Autophagy - animal
psiu04142
Lysosome biogenesis
psiu04148
Efferocytosis
psiu05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome biogenesis
116749059 (VPS39)
04140 Autophagy - animal
116749059 (VPS39)
04148 Efferocytosis
116749059 (VPS39)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
116749059 (VPS39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
psiu04131
]
116749059 (VPS39)
Membrane trafficking [BR:
psiu04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
116749059 (VPS39)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps39_1
CNH
TPR_Vps41
Clathrin
zf-Vps39_C
Beta-prop_RIG_2nd
VPS18_solenoid_2nd
LIF1_N
Beta-prop_WDR36-Utp21_1st
DUF4145
Lgl_C
EcoR124_C
Motif
Other DBs
NCBI-GeneID:
116749059
NCBI-ProteinID:
XP_032478890
Ensembl:
ENSPSNG00000001495
LinkDB
All DBs
Position
2:92079506..92126435
Genome browser
AA seq
931 aa
AA seq
DB search
MHDAFEPVPILEKLPLQIDCLAAWEEWLLVGTKQGHLLLYRIRKDVGCNRFEVTLEKSNK
NFSKKIQQIHVVSQFKILVSLLENNIYVHDLLTFQQITTVSKAKGASLFTCDLQHTETGE
EVLRMCVAVKKKLQLYFWKDREFHELQGDFSVPDVPKSMAWCENAICVGFKRDYYLIRVD
GKGSNKELFPTGKQLEPLVAPLADGKVAVGQDDLTVVLNEEGICTQKCALNWTDIPVAME
HQPPYIIAVLPRYVEIRTFEPRLLVQSIELQRPRFITSGGSNIIYVASNHFVWRLIPVPM
ATQIQQLLQDKQFELALQLAEMKDDSDSEKQQQIHHIKNLYAFNLFCQKRFDESMQVFAK
LGTDPTHVMGLYPDLLPTDYRKQLQYPNPLPVLSGAELEKAHLALIDYLTQKRSQLVKKL
NDSDHQSSTSPLMEGTPTIKSKKKLLQIIDTTLLKCYLHTNVALVAPLLRLENNHCHIEE
SEHVLKKAHKYSELIILYEKKGLHEKALQVLVDQSKKANSPLKGHERTVQYLQHLGTENL
HLIFSYSVWVLRDFPEDGLKIFTEDLPEVESLPRDRVLGFLVENFKGLAIPYLEHVIHVW
EETGSRFHNCLIQLYCEKVQGLMKEYLLSFPAGKAPVPAGEEEGDLGEYRRKLLKFLEIS
SYYDPGRLICDFPFDGLLEERALLLGRMGKHEQALFIYVHILKDTRMAEEYCHKHYDQNK
DGNKDVYLSLLRMYLSPPSVHCLGPIKLELLEPQANLQAALQVLELHHGKLDTTKAINLL
PANTQINDIRIFLEKVLEENAQRKRFNQVLKNLLHAEFLRVQEERILHQQVKCIITEEKV
CMVCKKKIGNRQFRRILYLLGQEETGKGTILSLHSNHPNEETVSSVCNPGVVYSKFSIKI
HAGLHRSPQLGCLKSWSTRAPLAAKAKWPVL
NT seq
2796 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacgcctttgaaccggtgccgatcctagaaaagctgcctctgcagatcgactgt
ctggctgcctgggaggaatggctgcttgttggaacgaaacaaggtcatcttcttctctat
aggattcggaaggatgttggttgcaacaggtttgaagtgacattagagaaatccaataag
aacttctccaaaaagattcagcagatccatgtggtttcccagtttaagattctggtcagc
ttgttagaaaataatatttatgtccatgacctattgacatttcaacaaatcactacagtt
tccaaggcaaagggagcatcactgttcacatgtgacctccagcacacagagactggggag
gaggtgttgcggatgtgtgtggctgtgaaaaagaagctgcagctctatttctggaaagac
agggaatttcatgaattgcagggagactttagtgtaccagatgtgcccaagtccatggca
tggtgtgaaaatgctatctgtgtgggtttcaagagagactactacctaataagggtagat
ggaaaggggtccaacaaagagctatttccaacaggaaaacagctggagcccttagttgca
cctctggcagatggaaaggtggctgtgggtcaggatgatctcaccgtggtgctcaatgag
gaggggatctgcacacagaagtgtgccctgaactggacagacatccctgtggccatggag
caccagcctccctacatcattgcagtgttgcctcgatatgtggagatccggacatttgag
ccaaggcttctggtccagagcattgaattgcaaaggccccgtttcattacctcaggagga
tcaaacattatctatgtggccagcaaccattttgtttggagactcattccagtccccatg
gcaacccaaatccaacagcttctccaggacaagcagtttgaattggctctgcagcttgca
gaaatgaaagatgattccgacagtgaaaaacagcaacagatccatcacatcaagaacttg
tatgccttcaacctcttctgccagaagcgttttgatgagtccatgcaggtctttgctaaa
cttggcacagatcctacacatgtgatgggcctgtacccagacctgctacccacagactac
aggaagcagctacagtatcctaacccgctgcctgtgctctctggggctgagttggagaag
gctcacttagctctgattgactacctgacacagaaacgaagccaattggtcaagaagctg
aatgactctgatcaccagtctagcacctccccgctcatggaaggcactcctaccatcaaa
tccaagaagaagctgctgcaaatcattgacaccaccctgctcaagtgctacctccatacg
aacgtggccctggtggcccccttgctgcgcctggagaacaaccactgccacatcgaagag
agcgagcacgtgctgaagaaggctcacaagtacagcgaactgatcatcctgtacgagaag
aaggggctccatgagaaagctctgcaggtgctggtggaccagtccaagaaagcgaattcc
cctctgaaaggccatgagaggacagtgcaatacctgcaacatctgggcacggaaaacctg
catttgattttctcctactcagtgtgggtgctgagagactttccagaggatgggctgaag
atatttactgaggacctcccagaggtggagtctctgccgcgagaccgagtgcttggcttc
ttagtggagaattttaagggtctggcaattccatatctggaacacgtcatccacgtttgg
gaagagacgggctctcggttccacaactgcctgatccagctgtactgtgagaaggtgcaa
ggtctgatgaaggagtatctcctgtccttccctgcaggcaaagctccagtccctgctggt
gaggaagaaggagatctgggagaataccgacggaagctccttaagttcttggaaatttct
agctactatgacccaggccggctcatctgtgattttccttttgatggcctcttagaagag
cgtgctctcctgctgggacgcatggggaaacacgaacaagctctcttcatctatgtccac
atcctgaaggatacgagaatggctgaagagtactgccacaagcattatgaccaaaataaa
gatggcaacaaagatgtgtatctgtccctgctccggatgtacctgtccccacccagcgtt
cactgcctggggccaatcaagctggaactgctggagccacaagccaacctccaagctgcc
ctgcaggtcctcgagctgcaccacggcaaactggataccaccaaggccatcaaccttctg
ccagcgaacactcagattaacgatatacgcatctttctggaaaaggtcttggaagagaat
gcacaaaggaaacggttcaatcaagtgctcaagaaccttctccatgcagagttcctgagg
gtccaggaagagcggattttacaccagcaggtgaagtgcatcatcacagaggagaaggtg
tgcatggtgtgtaagaagaagattgggaacaggcaattccggagaattttatacctgctt
ggacaggaggagacggggaagggcaccatcctgtctttgcattccaatcacccgaatgag
gaaactgtctcaagtgtttgcaaccctggggttgtttattccaagttttctattaagata
catgcaggacttcacaggagccctcagctcggctgcctgaagtcctggagtaccagagct
cctctggctgcaaaggccaaatggcccgtcctctag
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