Phocoena sinus (vaquita): 116749108
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Entry
116749108 CDS
T07759
Symbol
SCFD1
Name
(RefSeq) sec1 family domain-containing protein 1
KO
K19998
sec1 family domain-containing protein 1
Organism
psiu
Phocoena sinus (vaquita)
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
psiu04131
]
116749108 (SCFD1)
Membrane trafficking [BR:
psiu04131
]
SNARE
SNARE associated proteins
Syntaxin-binding proteins
116749108 (SCFD1)
Endoplasmic reticulum (ER) - Golgi transport
Others
Others
116749108 (SCFD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec1
cwf21
Motif
Other DBs
NCBI-GeneID:
116749108
NCBI-ProteinID:
XP_032478994
Ensembl:
ENSPSNG00000016119
UniProt:
A0A8C9E6W8
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All DBs
Position
2:109824711..109967454
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AA seq
652 aa
AA seq
DB search
MIGLRSPAGQCMVGAKMAAAAAASIRERQTVALKRMLNFNVPHIKNSTGEPVWKVLIYDR
FGQDIISPLLSVKELRDMGITLHLLLHSDRDPIPDVPAVYFVMPTEENIDRMCQDLRNQL
YESYYLNFISAISRSKLEDIANAALAASAVTQVAKVFDQYLNFITLEDDMFVLCNQNKEL
VSYRAINRPDITDTEMETVMDTIVDSLFCFFVTLGAVPIIRCSRGTAAEMVAVKLDKKLR
ENLRDARNSLFTGDTLGAGQFSFQRPLLVLVDRNIDLATPLHHTWTYQALVHDVLDFHLN
RVNLEESSGVENSPAGARPKRKNKKSYDLTPVDKFWQKHKGSPFPEVAESVQQELESYRA
QEDEVKRLKSIMGLEGEDEGAISMLSDNTAKLTSAVSSLPELLEKKRLIDLHTNVATAVL
EHIKARKLDVYFEYEEKIMSKTTLDKSLLDIISDPDAGTPEDKMRLFLIYYISAQQAPSE
ADLEQYKKALTDAGCNLNPLQYIKQWKAFAKMASAPTSYGNTTTKPMGLLSRVMNTGSQF
VMEGVKNLVLKQQNLPVTRILDNLMEMKSNPETDDYRYFDPKMLRGNDSSVPRNKNPFQE
AIVFVVGGGNYIEYQNLIDYIKGKQGKHILYGCSELFNATQFIKQLSQLGQK
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atgatagggctccgctctccagccgggcagtgtatggtgggagccaagatggcggcggcc
gcagcagccagtattcgagagagacaaacagtggctttgaaacgtatgttgaattttaat
gtgcctcatattaaaaacagcactggagaaccagtatggaaggtgctcatttatgataga
tttggccaagatatcatctctcctctgctatctgtgaaggagctgagagacatgggaatc
actttgcatctgcttttgcactctgatcgagatcctattccagatgttcctgcagtgtac
tttgtaatgccaactgaagaaaatattgacagaatgtgtcaggatcttcgaaatcaactc
tatgaatcatattatttaaattttatttctgctatttcaagaagtaaactggaagatatt
gcaaatgcagcattagcagctagtgcagtaacacaagtagccaaggtttttgatcagtat
ctcaattttattactttggaagatgatatgtttgtattatgtaatcaaaataaggagctt
gtttcatatcgtgccattaatagaccagatatcacagacacagaaatggaaactgttatg
gacactattgttgacagcctcttttgcttttttgttacactgggtgctgtccctataatc
agatgttcaagaggaacagcagcagaaatggtagcagtgaaactagataagaaacttcgg
gaaaatctgagagatgcaagaaacagtctttttacaggtgacacacttggagctggccag
ttcagcttccaaaggcctttattagtccttgttgacagaaacatagatttggcaactcct
ttacaccatacttggacatatcaagccttggtgcatgatgtactggatttccacttgaac
agagttaatttggaagagtcttcaggagtggagaattccccagctggtgctagaccaaag
agaaaaaacaagaagtcttatgatttaactccagttgataaattttggcagaaacataaa
ggaagtccattcccagaagttgcagaatcagttcagcaagaactagagtcttacagagca
caggaagatgaggttaaacgacttaaaagcattatgggactagaaggggaagatgaagga
gccataagtatgctgtctgacaatactgctaagttaacatcagccgttagttctttgcca
gaactccttgaaaaaaaaagacttattgatctccatacaaatgttgccactgctgtttta
gaacatataaaggcaagaaaattggatgtatattttgaatatgaagaaaaaataatgagc
aaaactactctggataaatcgcttctagatataatatcagaccctgatgcaggaactcca
gaagataaaatgaggctgtttcttatctattacataagtgcacagcaagcaccttctgag
gctgatttggagcaatacaaaaaagctttaactgatgctggatgcaaccttaatccctta
caatatatcaaacagtggaaggcttttgccaagatggcttcagctcctaccagctatggc
aacactaccactaaaccaatgggtctcttatcacgagtcatgaatacaggatcacaattt
gtgatggaaggagtgaagaacctggtattgaaacagcaaaatctacctgttactcgtatt
ttagacaatctcatggagatgaagtcaaaccctgaaactgatgactatagatattttgat
cccaaaatgctgcggggcaatgacagctcagttccaaggaacaaaaatccatttcaagag
gcaattgtttttgtggtgggaggaggcaactacattgaatatcaaaatcttattgactac
ataaaggggaaacaaggcaagcacatcttatatggctgcagtgaactttttaatgctaca
cagttcataaaacagctgtcacaacttggacaaaaataa
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